Wall clock time and date at job start Mon Mar 30 2020 02:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46862 * 2 1 4 4 H 1.08993 * 109.47278 * 54.99900 * 3 2 1 5 5 C 1.50704 * 109.46771 * 175.00063 * 3 2 1 6 6 H 1.07998 * 120.00571 * 119.99773 * 5 3 2 7 7 C 1.37887 * 119.99671 * 299.99295 * 5 3 2 8 8 N 1.31514 * 120.00086 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99784 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46793 * 90.00407 * 9 7 5 11 11 H 1.48497 * 109.47311 * 210.00105 * 9 7 5 12 12 H 1.48491 * 109.47214 * 330.00626 * 9 7 5 13 13 O 1.45201 * 109.46934 * 294.99468 * 3 2 1 14 14 C 1.34222 * 117.00137 * 90.00375 * 13 3 2 15 15 O 1.20833 * 119.99852 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00432 * 179.71953 * 14 13 3 17 17 H 1.09005 * 115.54242 * 34.61124 * 16 14 13 18 18 C 1.52997 * 117.50384 * 248.90029 * 16 14 13 19 19 C 1.52994 * 117.50206 * 180.27447 * 16 14 13 20 20 H 1.08997 * 117.49838 * 359.97438 * 19 16 14 21 21 C 1.52997 * 117.50226 * 214.98239 * 19 16 14 22 22 H 1.08997 * 109.47473 * 300.00217 * 1 2 3 23 23 H 1.09001 * 109.46626 * 60.00747 * 1 2 3 24 24 H 1.09002 * 109.47320 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47135 * 239.99460 * 2 1 3 26 26 H 1.09001 * 109.46380 * 119.99745 * 2 1 3 27 27 H 0.96993 * 119.99970 * 179.97438 * 8 7 5 28 28 H 1.08997 * 117.49467 * 359.97438 * 18 16 14 29 29 H 1.08999 * 117.49814 * 145.01596 * 18 16 14 30 30 H 1.08999 * 109.47294 * 60.00088 * 21 19 16 31 31 H 1.08999 * 109.47377 * 180.02562 * 21 19 16 32 32 H 1.09003 * 109.47246 * 300.00150 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4061 0.3367 2.1730 9 14 6.0050 0.8800 1.3813 10 1 6.4427 2.1129 2.0838 11 1 6.4390 -0.3110 2.1548 12 1 6.6131 0.8394 0.0272 13 8 1.6559 2.0916 -1.2408 14 6 0.4728 2.7253 -1.2562 15 8 -0.2189 2.7377 -0.2655 16 6 0.0101 3.4272 -2.5068 17 1 0.2969 2.9529 -3.4454 18 6 -0.0524 4.9556 -2.4772 19 6 -1.3445 4.1367 -2.4588 20 1 -1.9014 4.0953 -1.5227 21 6 -2.1928 4.1267 -3.7320 22 1 -0.3634 0.5138 0.8899 23 1 -0.3632 0.5137 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8932 -0.5138 0.8901 27 1 3.8292 -0.0616 2.9496 28 1 0.2408 5.4534 -1.5529 29 1 0.1935 5.4873 -3.3965 30 1 -2.4166 3.0972 -4.0115 31 1 -3.1233 4.6654 -3.5530 32 1 -1.6427 4.6108 -4.5390 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393253216.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:03 Heat of formation + Delta-G solvation = -98.017534 kcal Electronic energy + Delta-G solvation = -14365.037556 eV Core-core repulsion = 11904.348425 eV Total energy + Delta-G solvation = -2460.689130 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.52043 -38.72406 -37.09985 -35.51293 -33.37850 -29.88989 -29.24424 -26.09469 -24.79130 -22.42652 -21.66012 -20.85429 -19.00616 -18.49527 -17.50181 -17.02745 -16.49475 -15.23452 -15.15092 -14.81019 -14.39988 -13.93107 -13.80851 -13.38100 -13.26846 -13.12931 -12.90233 -12.82825 -12.58388 -12.34226 -12.14510 -11.78659 -11.51088 -11.39625 -11.19590 -11.01387 -10.83751 -10.55038 -8.29448 -6.46852 1.25694 1.40412 1.42539 1.54259 1.99465 2.40573 2.79160 3.00047 3.68268 3.82053 3.86595 4.19068 4.33510 4.36699 4.39019 4.53664 4.71860 4.81050 4.86014 4.95160 5.02422 5.06345 5.18604 5.20380 5.36399 5.42699 5.49481 5.64174 5.95862 6.12009 6.58535 7.00924 7.25674 8.77609 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.047224 B = 0.007754 C = 0.007036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.774679 B = 3610.039548 C = 3978.640859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 C 0.223 3.777 4 H 0.004 0.996 5 C -0.552 4.552 6 H 0.065 0.935 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.983 3.017 10 H -0.272 1.272 11 H -0.274 1.274 12 H -0.263 1.263 13 O -0.363 6.363 14 C 0.471 3.529 15 O -0.548 6.548 16 C -0.185 4.185 17 H 0.150 0.850 18 C -0.133 4.133 19 C -0.116 4.116 20 H 0.096 0.904 21 C -0.116 4.116 22 H 0.034 0.966 23 H 0.036 0.964 24 H 0.063 0.937 25 H 0.046 0.954 26 H 0.087 0.913 27 H 0.271 0.729 28 H 0.085 0.915 29 H 0.144 0.856 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.448 5.635 -10.520 13.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.168 4.168 3 C 0.170 3.830 4 H 0.022 0.978 5 C -0.590 4.590 6 H 0.083 0.917 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.806 3.194 10 H -0.197 1.197 11 H -0.199 1.199 12 H -0.187 1.187 13 O -0.280 6.280 14 C 0.317 3.683 15 O -0.440 6.440 16 C -0.203 4.203 17 H 0.168 0.832 18 C -0.170 4.170 19 C -0.134 4.134 20 H 0.114 0.886 21 C -0.173 4.173 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.105 0.895 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.162 0.838 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.608 5.510 -10.034 13.217 hybrid contribution 0.851 -0.305 0.846 1.238 sum -5.756 5.205 -9.188 12.027 Atomic orbital electron populations 1.21706 0.96262 1.00640 1.00018 1.21869 0.94501 0.98053 1.02369 1.20388 0.94634 0.89352 0.78614 0.97799 1.21340 0.90483 1.40130 1.06997 0.91698 1.25836 1.04436 0.93743 0.94258 1.70013 1.37555 1.37873 1.09878 0.85184 0.77432 0.78092 0.78720 1.19716 1.19867 1.18710 1.86452 1.35935 1.63056 1.42537 1.23397 0.79259 0.75820 0.89838 1.90568 1.56103 1.59877 1.37487 1.22007 1.05751 0.97458 0.95127 0.83210 1.23315 0.99792 0.88659 1.05188 1.22566 0.88685 1.00055 1.02095 0.88582 1.21421 0.99405 1.02882 0.93590 0.94693 0.94518 0.91810 0.93535 0.89469 0.91959 0.89630 0.83839 0.91722 0.90257 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.88 8.57 71.98 0.62 -5.26 16 2 C -0.13 -6.77 5.49 30.59 0.17 -6.60 16 3 C 0.22 12.63 2.25 29.85 0.07 12.70 16 4 H 0.00 0.27 7.16 -2.39 -0.02 0.25 16 5 C -0.55 -32.20 8.90 25.60 0.23 -31.97 16 6 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 7 C 0.02 0.95 5.29 84.66 0.45 1.40 16 8 N -0.92 -53.30 11.29 21.45 0.24 -53.05 16 9 Si 0.98 43.44 29.54 68.60 2.03 45.46 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 12 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 13 O -0.36 -18.35 9.81 -51.34 -0.50 -18.86 16 14 C 0.47 20.69 6.20 71.23 0.44 21.14 16 15 O -0.55 -26.97 13.40 21.94 0.29 -26.67 16 16 C -0.18 -5.62 6.02 -11.54 -0.07 -5.69 16 17 H 0.15 3.86 8.14 -2.38 -0.02 3.84 16 18 C -0.13 -3.17 9.88 30.59 0.30 -2.87 16 19 C -0.12 -2.83 5.92 -10.80 -0.06 -2.89 16 20 H 0.10 2.77 7.67 -2.39 -0.02 2.75 16 21 C -0.12 -1.88 10.19 71.98 0.73 -1.14 16 22 H 0.03 1.68 7.80 -2.39 -0.02 1.66 16 23 H 0.04 1.61 6.06 -2.39 -0.01 1.59 16 24 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.09 4.92 5.95 -2.39 -0.01 4.91 16 27 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 28 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.14 2.33 8.05 -2.39 -0.02 2.31 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 0.98 7.90 -2.39 -0.02 0.96 16 Total: -1.00 -67.64 269.61 6.02 -61.62 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 1.09 Total: 12.70 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: 2.87 Total: -21.20 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.24 Total: -53.05 kcal Atomic # 8 Polarization: -45.32 SS G_CDS: -0.21 Total: -45.53 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -67.64 6.02 -61.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393253216.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.400 kcal (2) G-P(sol) polarization free energy of solvation -67.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds