Wall clock time and date at job start Mon Mar 30 2020 02:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99831 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.46930 * 179.97438 * 12 11 10 14 14 H 1.08994 * 110.85599 * 51.20825 * 13 12 11 15 15 C 1.54484 * 110.96829 * 175.00198 * 13 12 11 16 16 N 1.46762 * 105.47352 * 143.53523 * 15 13 12 17 17 C 1.34420 * 111.30020 * 342.98498 * 16 15 13 18 18 O 1.21283 * 124.94117 * 180.40936 * 17 16 15 19 19 C 1.51276 * 110.11891 * 0.40310 * 17 16 15 20 20 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 22 22 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 23 23 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 24 24 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 25 25 H 1.00897 * 111.00046 * 56.04666 * 11 10 9 26 26 H 1.08991 * 109.47315 * 299.99753 * 12 11 10 27 27 H 1.08999 * 109.47003 * 60.00043 * 12 11 10 28 28 H 1.09003 * 110.24241 * 262.53932 * 15 13 12 29 29 H 1.08997 * 110.24454 * 24.44766 * 15 13 12 30 30 H 0.96996 * 124.34888 * 163.00021 * 16 15 13 31 31 H 1.08998 * 110.49221 * 257.58221 * 19 17 16 32 32 H 1.08997 * 110.48667 * 134.92903 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 -0.0001 12 6 2.4354 -6.0758 0.0005 13 6 1.6353 -7.3800 0.0005 14 1 0.8888 -7.3773 -0.7937 15 6 2.5711 -8.6027 -0.1246 16 7 1.9693 -9.6441 0.7165 17 6 1.0747 -9.1229 1.5737 18 8 0.4380 -9.7600 2.3858 19 6 0.9778 -7.6259 1.3783 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6241 -2.5566 0.8903 22 1 0.6247 -2.5571 -0.8897 23 1 2.8720 -3.6043 -0.8894 24 1 2.8720 -3.6043 0.8906 25 1 0.8747 -4.9841 -0.7817 26 1 3.0639 -6.0348 -0.8890 27 1 3.0627 -6.0349 0.8910 28 1 2.6195 -8.9362 -1.1612 29 1 3.5684 -8.3530 0.2377 30 1 2.1891 -10.5872 0.6610 31 1 1.5262 -7.1025 2.1615 32 1 -0.0653 -7.3097 1.3650 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398380362.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:48 Heat of formation + Delta-G solvation = -56.385517 kcal Electronic energy + Delta-G solvation = -13589.649560 eV Core-core repulsion = 11163.058480 eV Total energy + Delta-G solvation = -2426.591080 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.39080 -37.17606 -35.68889 -33.45267 -31.69442 -29.00040 -27.79597 -24.87233 -23.02912 -21.24488 -20.65933 -20.46059 -17.53625 -16.82227 -16.30380 -15.45936 -15.00943 -14.48588 -14.12236 -13.72861 -13.53194 -13.37751 -13.17427 -12.41353 -12.28456 -11.82019 -11.46972 -11.21793 -10.95788 -10.85774 -10.23807 -10.13353 -9.92076 -9.76033 -9.32953 -8.60016 -8.33693 -8.01240 -6.36936 -4.06301 2.50031 3.18290 3.43334 3.45427 3.64255 4.13468 4.29575 4.48780 4.55532 4.85513 4.97454 5.22764 5.35161 5.37038 5.41071 5.62477 5.65708 5.90484 6.03694 6.15190 6.22252 6.61322 6.77486 6.80574 7.18743 7.45272 7.60977 7.76696 8.10840 8.21793 8.45131 8.87706 9.66346 11.04237 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.074423 B = 0.004624 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.135539 B = 6053.482698 C = 6254.998609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.016 3.984 3 Si 1.069 2.931 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.605 4.605 8 H 0.047 0.953 9 C 0.012 3.988 10 C 0.073 3.927 11 N -0.692 5.692 12 C 0.068 3.932 13 C -0.098 4.098 14 H 0.090 0.910 15 C 0.105 3.895 16 N -0.736 5.736 17 C 0.517 3.483 18 O -0.541 6.541 19 C -0.140 4.140 20 H 0.270 0.730 21 H 0.017 0.983 22 H 0.004 0.996 23 H 0.018 0.982 24 H 0.060 0.940 25 H 0.336 0.664 26 H 0.031 0.969 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.407 0.593 31 H 0.109 0.891 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.122 -15.702 -2.342 17.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.188 4.188 3 Si 0.898 3.102 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.644 4.644 8 H 0.066 0.934 9 C -0.026 4.026 10 C -0.055 4.055 11 N -0.323 5.323 12 C -0.062 4.062 13 C -0.118 4.118 14 H 0.109 0.891 15 C -0.020 4.020 16 N -0.392 5.392 17 C 0.304 3.696 18 O -0.418 6.418 19 C -0.180 4.180 20 H 0.080 0.920 21 H 0.035 0.965 22 H 0.023 0.977 23 H 0.036 0.964 24 H 0.079 0.921 25 H 0.154 0.846 26 H 0.049 0.951 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.245 0.755 31 H 0.127 0.873 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.483 -14.256 -1.215 15.322 hybrid contribution 0.783 -2.073 -1.065 2.458 sum 6.266 -16.329 -2.281 17.637 Atomic orbital electron populations 1.70775 1.06881 1.30710 1.46399 1.25838 0.96545 1.02693 0.93749 0.83541 0.74882 0.75360 0.76466 1.20738 1.21424 1.21521 1.21988 0.94214 0.92021 1.56128 0.93428 1.19203 0.94680 0.92229 0.96472 1.22010 0.96671 0.87862 0.98946 1.60568 1.19837 1.02095 1.49779 1.21910 0.94243 0.89259 1.00762 1.22186 0.97750 0.93963 0.97866 0.89122 1.22107 0.97014 0.87619 0.95244 1.46253 1.43321 1.10475 1.39115 1.21208 0.77974 0.91119 0.79283 1.90742 1.46750 1.67622 1.36645 1.22330 1.04845 0.92227 0.98618 0.91991 0.96470 0.97729 0.96394 0.92101 0.84636 0.95092 0.90826 0.90279 0.90801 0.75497 0.87328 0.87631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.97 13.65 55.43 0.76 -27.21 16 2 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 3 Si 1.07 25.14 29.90 -169.99 -5.08 20.06 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.60 -17.14 9.11 -34.44 -0.31 -17.45 16 8 H 0.05 1.32 7.74 -52.48 -0.41 0.91 16 9 C 0.01 0.29 4.54 -27.88 -0.13 0.17 16 10 C 0.07 1.46 5.62 -3.83 -0.02 1.44 16 11 N -0.69 -10.95 6.44 -113.78 -0.73 -11.69 16 12 C 0.07 0.80 4.99 -3.82 -0.02 0.78 16 13 C -0.10 -0.94 3.31 -88.98 -0.29 -1.23 16 14 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 15 C 0.11 0.78 7.35 -3.12 -0.02 0.76 16 16 N -0.74 -6.72 6.24 -59.20 -0.37 -7.09 16 17 C 0.52 6.57 8.43 -10.86 -0.09 6.48 16 18 O -0.54 -9.16 18.03 5.55 0.10 -9.06 16 19 C -0.14 -1.60 6.36 -26.74 -0.17 -1.77 16 20 H 0.27 8.25 7.22 -40.82 -0.29 7.95 16 21 H 0.02 0.46 8.01 -51.93 -0.42 0.05 16 22 H 0.00 0.12 8.01 -51.93 -0.42 -0.30 16 23 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 25 H 0.34 5.09 8.73 -39.29 -0.34 4.75 16 26 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.87 7.93 -51.93 -0.41 0.46 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.49 7.89 -51.93 -0.41 0.08 16 30 H 0.41 3.01 8.96 -40.82 -0.37 2.64 16 31 H 0.11 1.27 7.75 -51.93 -0.40 0.87 16 32 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 271.86 15.07 4.10 4.10 Total: -1.00 -33.15 271.86 -7.19 -40.34 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -4.80 Total: 1.03 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -1.16 Total: -10.47 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: -0.35 Total: -45.99 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.10 Total: -9.06 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.08 Total: 20.06 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -33.15 -7.19 -40.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398380362.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.045 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds