Wall clock time and date at job start Mon Mar 30 2020 02:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99831 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.46930 * 179.97438 * 12 11 10 14 14 H 1.08994 * 110.85599 * 51.20825 * 13 12 11 15 15 C 1.54484 * 110.96829 * 175.00198 * 13 12 11 16 16 N 1.46762 * 105.47352 * 143.53523 * 15 13 12 17 17 C 1.34420 * 111.30020 * 342.98498 * 16 15 13 18 18 O 1.21283 * 124.94117 * 180.40936 * 17 16 15 19 19 C 1.51276 * 110.11891 * 0.40310 * 17 16 15 20 20 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 22 22 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 23 23 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 24 24 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 25 25 H 1.00897 * 111.00046 * 56.04666 * 11 10 9 26 26 H 1.08991 * 109.47315 * 299.99753 * 12 11 10 27 27 H 1.08999 * 109.47003 * 60.00043 * 12 11 10 28 28 H 1.09003 * 110.24241 * 262.53932 * 15 13 12 29 29 H 1.08997 * 110.24454 * 24.44766 * 15 13 12 30 30 H 0.96996 * 124.34888 * 163.00021 * 16 15 13 31 31 H 1.08998 * 110.49221 * 257.58221 * 19 17 16 32 32 H 1.08997 * 110.48667 * 134.92903 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 -0.0001 12 6 2.4354 -6.0758 0.0005 13 6 1.6353 -7.3800 0.0005 14 1 0.8888 -7.3773 -0.7937 15 6 2.5711 -8.6027 -0.1246 16 7 1.9693 -9.6441 0.7165 17 6 1.0747 -9.1229 1.5737 18 8 0.4380 -9.7600 2.3858 19 6 0.9778 -7.6259 1.3783 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6241 -2.5566 0.8903 22 1 0.6247 -2.5571 -0.8897 23 1 2.8720 -3.6043 -0.8894 24 1 2.8720 -3.6043 0.8906 25 1 0.8747 -4.9841 -0.7817 26 1 3.0639 -6.0348 -0.8890 27 1 3.0627 -6.0349 0.8910 28 1 2.6195 -8.9362 -1.1612 29 1 3.5684 -8.3530 0.2377 30 1 2.1891 -10.5872 0.6610 31 1 1.5262 -7.1025 2.1615 32 1 -0.0653 -7.3097 1.3650 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398380362.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:47 Heat of formation + Delta-G solvation = -82.612682 kcal Electronic energy + Delta-G solvation = -13590.786855 eV Core-core repulsion = 11163.058480 eV Total energy + Delta-G solvation = -2427.728375 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.30328 -38.30882 -37.02564 -35.31964 -32.95865 -30.53903 -28.80173 -26.39120 -24.61240 -22.80415 -21.58410 -21.50391 -18.89748 -18.43302 -17.26767 -16.75536 -15.99610 -15.83457 -15.63648 -15.20156 -14.94523 -14.47743 -14.24744 -13.96248 -13.67698 -13.09908 -12.98023 -12.63373 -12.23589 -11.99533 -11.96354 -11.89100 -11.62654 -10.95775 -10.70321 -10.52585 -10.12052 -9.29724 -8.67381 -6.38038 1.51133 1.54812 1.63319 1.82485 2.41314 2.58734 3.16990 3.18376 3.40597 3.67434 3.88971 4.11991 4.40399 4.43986 4.55840 4.62746 4.65507 4.76064 4.80079 4.93858 5.01142 5.21150 5.30054 5.47048 5.83104 5.93546 5.97453 6.17740 6.21927 6.48021 6.62713 7.21520 7.44801 8.74005 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.074423 B = 0.004624 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.135539 B = 6053.482698 C = 6254.998609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.039 4.039 3 Si 1.119 2.881 4 H -0.285 1.285 5 H -0.269 1.269 6 H -0.267 1.267 7 C -0.621 4.621 8 H 0.053 0.947 9 C 0.013 3.987 10 C 0.092 3.908 11 N -0.699 5.699 12 C 0.071 3.929 13 C -0.089 4.089 14 H 0.099 0.901 15 C 0.109 3.891 16 N -0.720 5.720 17 C 0.512 3.488 18 O -0.592 6.592 19 C -0.141 4.141 20 H 0.255 0.745 21 H -0.010 1.010 22 H -0.011 1.011 23 H 0.023 0.977 24 H 0.057 0.943 25 H 0.341 0.659 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.418 0.582 31 H 0.104 0.896 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.169 -16.185 -3.401 18.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.237 4.237 3 Si 0.939 3.061 4 H -0.211 1.211 5 H -0.194 1.194 6 H -0.192 1.192 7 C -0.659 4.659 8 H 0.071 0.929 9 C -0.025 4.025 10 C -0.037 4.037 11 N -0.331 5.331 12 C -0.058 4.058 13 C -0.108 4.108 14 H 0.117 0.883 15 C -0.015 4.015 16 N -0.374 5.374 17 C 0.300 3.700 18 O -0.474 6.474 19 C -0.181 4.181 20 H 0.065 0.935 21 H 0.008 0.992 22 H 0.007 0.993 23 H 0.041 0.959 24 H 0.076 0.924 25 H 0.159 0.841 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.128 0.872 29 H 0.109 0.891 30 H 0.258 0.742 31 H 0.122 0.878 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.572 -14.783 -2.312 16.770 hybrid contribution 0.152 -1.979 -0.756 2.124 sum 7.724 -16.762 -3.069 18.710 Atomic orbital electron populations 1.70915 1.08044 1.29911 1.48718 1.27448 0.96578 1.06928 0.92700 0.82922 0.74097 0.70971 0.78068 1.21072 1.19424 1.19205 1.22466 0.94784 0.93430 1.55241 0.92907 1.19123 0.95144 0.93888 0.94320 1.21603 0.95152 0.88004 0.98977 1.60438 1.20571 1.01723 1.50346 1.21968 0.93902 0.88292 1.01684 1.22100 0.98057 0.93911 0.96723 0.88310 1.22266 0.96708 0.85868 0.96654 1.46220 1.41813 1.11526 1.37873 1.21385 0.78065 0.91470 0.79116 1.90713 1.49035 1.68624 1.38990 1.22304 1.04430 0.91543 0.99857 0.93519 0.99204 0.99262 0.95910 0.92411 0.84143 0.93171 0.90715 0.87181 0.89123 0.74246 0.87816 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.57 13.65 21.45 0.29 -58.27 16 2 C -0.04 -2.27 5.46 84.65 0.46 -1.81 16 3 Si 1.12 49.74 29.90 68.60 2.05 51.79 16 4 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 7 C -0.62 -35.18 9.11 25.60 0.23 -34.95 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.01 0.65 4.54 29.85 0.14 0.79 16 10 C 0.09 3.58 5.62 86.30 0.49 4.06 16 11 N -0.70 -21.23 6.44 -513.90 -3.31 -24.54 16 12 C 0.07 1.46 4.99 86.30 0.43 1.89 16 13 C -0.09 -1.46 3.31 -9.73 -0.03 -1.49 16 14 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 15 C 0.11 1.19 7.35 86.83 0.64 1.83 16 16 N -0.72 -11.35 6.24 -459.80 -2.87 -14.22 16 17 C 0.51 12.60 8.43 87.90 0.74 13.35 16 18 O -0.59 -20.35 18.03 -3.04 -0.05 -20.41 16 19 C -0.14 -3.10 6.36 30.59 0.19 -2.91 16 20 H 0.26 16.17 7.22 -92.71 -0.67 15.50 16 21 H -0.01 -0.59 8.01 -2.39 -0.02 -0.61 16 22 H -0.01 -0.59 8.01 -2.38 -0.02 -0.61 16 23 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.34 9.91 8.73 -89.70 -0.78 9.12 16 26 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.07 1.57 7.93 -2.39 -0.02 1.55 16 28 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.09 0.80 7.89 -2.39 -0.02 0.78 16 30 H 0.42 5.10 8.96 -92.71 -0.83 4.27 16 31 H 0.10 2.38 7.75 -2.39 -0.02 2.36 16 32 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -72.85 271.86 -1.00 -73.85 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -0.40 Total: 11.04 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 3.29 Total: -19.23 kcal Atomic # 7 Polarization: -91.15 SS G_CDS: -5.89 Total: -97.04 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.05 Total: -20.41 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 2.05 Total: 51.79 kcal Total: -72.85 -1.00 -73.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398380362.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.761 kcal (2) G-P(sol) polarization free energy of solvation -72.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds