Wall clock time and date at job start Mon Mar 30 2020 02:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00343 * 2 1 4 4 H 1.48501 * 109.46729 * 269.99973 * 3 2 1 5 5 H 1.48492 * 109.46997 * 29.99929 * 3 2 1 6 6 H 1.48501 * 109.47173 * 149.99893 * 3 2 1 7 7 C 1.37879 * 119.99492 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99969 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00341 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47215 * 179.97438 * 9 7 2 11 11 C 1.34786 * 119.99912 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99775 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.99902 * 180.02562 * 11 10 9 14 14 H 1.08996 * 109.47057 * 39.99825 * 13 11 10 15 15 N 1.46896 * 109.47292 * 160.00153 * 13 11 10 16 16 C 1.52999 * 109.47177 * 280.00089 * 13 11 10 17 17 C 1.53787 * 113.61770 * 162.41551 * 16 13 11 18 18 C 1.53780 * 87.08269 * 220.01774 * 17 16 13 19 19 C 1.53781 * 113.61442 * 64.91945 * 16 13 11 20 20 H 0.97002 * 119.99705 * 359.97438 * 1 2 3 21 21 H 1.09006 * 109.47056 * 59.99880 * 9 7 2 22 22 H 1.08998 * 109.47175 * 299.99930 * 9 7 2 23 23 H 0.96993 * 120.00093 * 0.02562 * 10 9 7 24 24 H 1.00901 * 111.00026 * 297.15761 * 15 13 11 25 25 H 1.00900 * 111.00056 * 61.10446 * 15 13 11 26 26 H 1.09006 * 112.85024 * 293.72485 * 16 13 11 27 27 H 1.09006 * 113.60871 * 334.56990 * 17 16 13 28 28 H 1.08998 * 113.60971 * 105.46381 * 17 16 13 29 29 H 1.08994 * 113.61291 * 270.88356 * 18 17 16 30 30 H 1.09003 * 113.68751 * 139.98827 * 18 17 16 31 31 H 1.09006 * 113.61456 * 254.52893 * 19 16 13 32 32 H 1.08995 * 113.61916 * 25.43328 * 19 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6127 0.0005 11 6 1.7535 -4.8835 0.0011 12 8 0.5610 -5.1050 0.0011 13 6 2.7327 -6.0289 0.0016 14 1 3.5671 -5.7933 0.6621 15 7 2.0616 -7.2466 0.4758 16 6 3.2546 -6.2544 -1.4188 17 6 4.5472 -7.0857 -1.4755 18 6 5.0221 -6.1271 -2.5802 19 6 4.0804 -5.0781 -1.9656 20 1 -0.4850 0.8401 0.0004 21 1 0.6245 -2.5571 -0.8897 22 1 0.6239 -2.5567 0.8903 23 1 3.1564 -3.4356 0.0009 24 1 1.7484 -7.1391 1.4289 25 1 1.2949 -7.4964 -0.1307 26 1 2.4808 -6.6006 -2.1041 27 1 5.1422 -7.0304 -0.5638 28 1 4.3939 -8.1082 -1.8207 29 1 4.7325 -6.4395 -3.5835 30 1 6.0771 -5.8630 -2.5070 31 1 3.5504 -4.4797 -2.7067 32 1 4.5478 -4.4739 -1.1881 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398999453.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:36 Heat of formation + Delta-G solvation = -35.442530 kcal Electronic energy + Delta-G solvation = -14212.917134 eV Core-core repulsion = 11787.234210 eV Total energy + Delta-G solvation = -2425.682924 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.77801 -37.88411 -34.38564 -33.40432 -32.33885 -28.03179 -26.49614 -25.44892 -23.56823 -21.92406 -19.65856 -19.42477 -17.29121 -16.08401 -15.77581 -15.44766 -15.17369 -14.51852 -14.16376 -13.69277 -13.21890 -12.98787 -12.35285 -12.00013 -11.94341 -11.77999 -11.44801 -11.00278 -10.91986 -10.49816 -10.37582 -10.28546 -10.18906 -9.64817 -9.42420 -8.76133 -8.38191 -7.91431 -6.19032 -4.26221 3.22251 3.27749 3.28511 3.30861 4.08842 4.34550 4.47797 4.72801 4.79621 4.90422 5.17081 5.20692 5.38029 5.48021 5.58168 5.79760 5.82808 5.90001 5.98757 6.14708 6.31187 6.54279 7.12285 7.28418 7.39959 7.48222 7.53060 7.63670 7.94544 8.59242 8.74196 9.04960 9.40562 10.91185 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.037683 B = 0.007533 C = 0.006551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.855412 B = 3716.308824 C = 4272.991020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.248 3.752 10 N -0.705 5.705 11 C 0.466 3.534 12 O -0.565 6.565 13 C 0.082 3.918 14 H 0.096 0.904 15 N -0.820 5.820 16 C -0.095 4.095 17 C -0.120 4.120 18 C -0.144 4.144 19 C -0.137 4.137 20 H 0.266 0.734 21 H 0.026 0.974 22 H 0.025 0.975 23 H 0.390 0.610 24 H 0.342 0.658 25 H 0.347 0.653 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.526 -10.565 -2.256 14.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.127 3.873 10 N -0.353 5.353 11 C 0.249 3.751 12 O -0.445 6.445 13 C -0.034 4.034 14 H 0.114 0.886 15 N -0.348 5.348 16 C -0.114 4.114 17 C -0.157 4.157 18 C -0.182 4.182 19 C -0.176 4.176 20 H 0.076 0.924 21 H 0.043 0.957 22 H 0.043 0.957 23 H 0.223 0.777 24 H 0.154 0.846 25 H 0.160 0.840 26 H 0.109 0.891 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.198 -10.935 -2.365 14.483 hybrid contribution -0.117 1.783 0.132 1.792 sum 9.081 -9.151 -2.233 13.085 Atomic orbital electron populations 1.69976 1.06140 1.27314 1.48895 1.24958 0.94910 0.99480 0.94665 0.86416 0.79637 0.82631 0.78255 1.20424 1.20977 1.19720 1.21224 0.93236 0.90466 1.53232 0.91914 1.19101 0.88421 0.82217 0.97587 1.46589 1.11024 1.06355 1.71367 1.21805 0.90356 0.85557 0.77385 1.90645 1.17062 1.85036 1.51775 1.21596 0.96153 0.88066 0.97595 0.88636 1.59172 1.35709 1.32235 1.07697 1.22431 0.96807 0.97896 0.94272 1.22811 0.96041 0.98053 0.98807 1.22836 0.99382 0.97469 0.98502 1.22982 0.97626 0.96208 1.00735 0.92438 0.95652 0.95703 0.77708 0.84594 0.84010 0.89095 0.90052 0.91572 0.90438 0.91507 0.90933 0.89828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.85 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 7 C -0.54 -14.75 9.28 -34.44 -0.32 -15.07 16 8 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 9 C 0.25 6.60 5.43 -5.19 -0.03 6.57 16 10 N -0.71 -14.79 5.18 -61.47 -0.32 -15.11 16 11 C 0.47 9.23 6.83 -10.98 -0.07 9.16 16 12 O -0.56 -13.48 16.28 5.55 0.09 -13.39 16 13 C 0.08 1.19 2.90 -68.87 -0.20 0.99 16 14 H 0.10 1.27 8.05 -51.93 -0.42 0.85 16 15 N -0.82 -11.22 8.98 -5.66 -0.05 -11.28 16 16 C -0.09 -1.24 3.34 -89.81 -0.30 -1.54 16 17 C -0.12 -1.28 7.64 -25.92 -0.20 -1.48 16 18 C -0.14 -1.50 8.08 -25.92 -0.21 -1.71 16 19 C -0.14 -1.73 6.67 -25.92 -0.17 -1.90 16 20 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 21 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.39 7.09 7.04 -40.82 -0.29 6.80 16 24 H 0.34 4.58 9.06 -39.29 -0.36 4.22 16 25 H 0.35 4.92 8.61 -39.29 -0.34 4.58 16 26 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.08 0.84 8.03 -51.93 -0.42 0.42 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 1.02 7.15 -51.93 -0.37 0.65 16 LS Contribution 271.04 15.07 4.08 4.08 Total: -1.00 -31.03 271.04 -6.76 -37.79 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -4.68 Total: 10.85 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -1.60 Total: -3.31 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 0.37 Total: -51.85 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.09 Total: -13.39 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.03 -6.76 -37.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398999453.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.350 kcal (2) G-P(sol) polarization free energy of solvation -31.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds