Wall clock time and date at job start Mon Mar 30 2020 02:51:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86807 * 120.00084 * 2 1
4 4 H 1.48497 * 109.46922 * 180.02562 * 3 2 1
5 5 H 1.48502 * 109.46952 * 300.00651 * 3 2 1
6 6 H 1.48495 * 109.46917 * 60.00338 * 3 2 1
7 7 C 1.37878 * 120.00212 * 180.02562 * 2 1 3
8 8 H 1.07992 * 120.00538 * 179.97438 * 7 2 1
9 9 C 1.50701 * 119.99504 * 359.97438 * 7 2 1
10 10 C 1.53008 * 109.46992 * 180.02562 * 9 7 2
11 11 N 1.46501 * 109.47190 * 179.97438 * 10 9 7
12 12 C 1.34775 * 119.99848 * 179.97438 * 11 10 9
13 13 O 1.21286 * 120.00064 * 0.02562 * 12 11 10
14 14 C 1.50697 * 119.99977 * 180.02562 * 12 11 10
15 15 H 1.08996 * 109.47188 * 40.00225 * 14 12 11
16 16 N 1.46905 * 109.47125 * 160.00003 * 14 12 11
17 17 C 1.53001 * 109.47213 * 279.99847 * 14 12 11
18 18 C 1.52996 * 117.50240 * 248.74774 * 17 14 12
19 19 C 1.53002 * 117.49994 * 180.08490 * 17 14 12
20 20 H 0.96998 * 120.00188 * 359.97438 * 1 2 3
21 21 H 1.08998 * 109.47250 * 60.00439 * 9 7 2
22 22 H 1.09004 * 109.47423 * 299.99870 * 9 7 2
23 23 H 1.09006 * 109.47141 * 59.99782 * 10 9 7
24 24 H 1.08995 * 109.46926 * 300.00206 * 10 9 7
25 25 H 0.96989 * 120.00034 * 0.02562 * 11 10 9
26 26 H 1.00901 * 110.99869 * 296.04907 * 16 14 12
27 27 H 1.00896 * 110.99543 * 60.00030 * 16 14 12
28 28 H 1.09000 * 115.54496 * 34.42042 * 17 14 12
29 29 H 1.09006 * 117.49510 * 359.97438 * 18 17 14
30 30 H 1.09004 * 117.50079 * 145.01747 * 18 17 14
31 31 H 1.08997 * 117.49669 * 214.98314 * 19 17 14
32 32 H 1.09000 * 117.49343 * 359.97438 * 19 17 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.7091 1.3464 -0.0006
5 1 1.8903 2.3965 -1.2124
6 1 1.8905 2.3964 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2510 -2.4991 -0.0005
10 6 2.2452 -3.6621 -0.0005
11 7 1.5127 -4.9308 0.0001
12 6 2.1866 -6.0980 -0.0003
13 8 3.3994 -6.0980 -0.0007
14 6 1.4331 -7.4031 -0.0003
15 1 0.5695 -7.3241 -0.6605
16 7 2.3153 -8.4778 -0.4745
17 6 0.9617 -7.7198 1.4204
18 6 1.6155 -8.9047 2.1341
19 6 0.1738 -9.0143 1.6313
20 1 -0.4850 0.8400 0.0004
21 1 0.6240 -2.5567 -0.8903
22 1 0.6246 -2.5571 0.8897
23 1 2.8719 -3.6044 0.8895
24 1 2.8719 -3.6043 -0.8905
25 1 0.5428 -4.9308 0.0000
26 1 2.5886 -8.3245 -1.4335
27 1 3.1240 -8.5711 0.1216
28 1 0.6846 -6.8575 2.0269
29 1 2.3813 -9.4589 1.5913
30 1 1.7682 -8.8221 3.2102
31 1 -0.6213 -9.0038 2.3767
32 1 -0.0089 -9.6401 0.7577
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000399219496.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:51:38
Heat of formation + Delta-G solvation = -27.883744 kcal
Electronic energy + Delta-G solvation = -13761.829901 eV
Core-core repulsion = 11336.474751 eV
Total energy + Delta-G solvation = -2425.355150 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 212.127 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-39.78330 -37.36728 -34.96259 -32.91912 -32.84744 -29.84768 -26.81397 -24.47256
-22.42599 -21.43880 -20.81483 -19.56917 -17.11390 -16.82336 -16.38584 -15.52817
-14.82874 -14.55159 -14.37261 -14.18874 -13.33745 -13.09623 -12.67303 -12.32452
-11.47126 -11.39077 -11.23312 -11.07067 -10.67219 -10.57887 -10.37988 -10.29015
-9.91584 -9.69839 -9.33863 -8.68375 -8.59118 -8.39796 -6.12210 -4.15253
2.86586 3.26340 3.33887 3.38667 3.57437 3.85301 4.39129 4.42678
4.69354 4.89234 4.93609 5.22148 5.24940 5.35288 5.50663 5.64104
5.82199 6.11707 6.16464 6.28906 6.29923 6.69168 6.86239 6.91493
7.28846 7.48000 7.57782 7.85676 7.95601 8.24183 8.56622 8.90927
9.49910 10.99418
Molecular weight = 212.13amu
Principal moments of inertia in cm(-1)
A = 0.060670 B = 0.005354 C = 0.005138
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 461.400291 B = 5228.794454 C = 5448.019543
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.059 3.941
3 Si 0.897 3.103
4 H -0.271 1.271
5 H -0.283 1.283
6 H -0.283 1.283
7 C -0.522 4.522
8 H 0.059 0.941
9 C 0.012 3.988
10 C 0.120 3.880
11 N -0.717 5.717
12 C 0.475 3.525
13 O -0.557 6.557
14 C 0.104 3.896
15 H 0.104 0.896
16 N -0.821 5.821
17 C -0.153 4.153
18 C -0.170 4.170
19 C -0.162 4.162
20 H 0.262 0.738
21 H 0.022 0.978
22 H 0.022 0.978
23 H 0.055 0.945
24 H 0.055 0.945
25 H 0.399 0.601
26 H 0.344 0.656
27 H 0.350 0.650
28 H 0.110 0.890
29 H 0.105 0.895
30 H 0.089 0.911
31 H 0.091 0.909
32 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.551 -15.060 1.403 15.136
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.533 5.533
2 C -0.143 4.143
3 Si 0.724 3.276
4 H -0.196 1.196
5 H -0.209 1.209
6 H -0.209 1.209
7 C -0.561 4.561
8 H 0.078 0.922
9 C -0.025 4.025
10 C -0.003 4.003
11 N -0.367 5.367
12 C 0.259 3.741
13 O -0.436 6.436
14 C -0.012 4.012
15 H 0.122 0.878
16 N -0.351 5.351
17 C -0.172 4.172
18 C -0.207 4.207
19 C -0.199 4.199
20 H 0.071 0.929
21 H 0.041 0.959
22 H 0.041 0.959
23 H 0.073 0.927
24 H 0.073 0.927
25 H 0.232 0.768
26 H 0.157 0.843
27 H 0.165 0.835
28 H 0.128 0.872
29 H 0.123 0.877
30 H 0.107 0.893
31 H 0.109 0.891
32 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges -0.436 -15.413 1.533 15.495
hybrid contribution 0.607 1.904 -0.122 2.002
sum 0.171 -13.509 1.411 13.584
Atomic orbital electron populations
1.69960 1.06101 1.26811 1.50414 1.24997 0.94889 0.99431 0.94940
0.86458 0.80162 0.83313 0.77656 1.19591 1.20893 1.20890 1.21087
0.93262 0.90398 1.51318 0.92243 1.19331 0.94182 0.91157 0.97852
1.21735 0.96103 0.81793 1.00668 1.46430 1.10612 1.06708 1.72926
1.21834 0.88881 0.86837 0.76554 1.90663 1.14107 1.87870 1.50923
1.20989 0.96420 0.87236 0.96573 0.87829 1.59278 1.24261 1.43565
1.07977 1.22138 1.06183 0.93542 0.95303 1.22932 0.96726 1.01350
0.99701 1.22896 0.94413 0.99330 1.03277 0.92862 0.95932 0.95924
0.92654 0.92672 0.76777 0.84311 0.83514 0.87216 0.87701 0.89265
0.89099 0.88174
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16
2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16
3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16
4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16
5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16
8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16
9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16
10 C 0.12 2.56 5.61 -4.04 -0.02 2.53 16
11 N -0.72 -12.39 5.56 -60.29 -0.33 -12.72 16
12 C 0.48 7.87 7.05 -10.99 -0.08 7.79 16
13 O -0.56 -11.22 16.25 5.55 0.09 -11.13 16
14 C 0.10 1.28 3.51 -68.86 -0.24 1.04 16
15 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16
16 N -0.82 -9.34 8.02 -5.65 -0.05 -9.39 16
17 C -0.15 -1.75 5.69 -90.62 -0.52 -2.27 16
18 C -0.17 -1.78 9.70 -26.69 -0.26 -2.04 16
19 C -0.16 -1.57 10.18 -26.69 -0.27 -1.84 16
20 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16
21 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16
22 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16
23 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16
24 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16
25 H 0.40 5.97 8.47 -40.82 -0.35 5.62 16
26 H 0.34 3.76 9.06 -39.29 -0.36 3.41 16
27 H 0.35 4.19 7.09 -39.29 -0.28 3.91 16
28 H 0.11 1.32 8.11 -51.93 -0.42 0.90 16
29 H 0.10 1.09 6.26 -51.93 -0.33 0.77 16
30 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16
31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16
32 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16
LS Contribution 275.54 15.07 4.15 4.15
Total: -1.00 -30.79 275.54 -7.01 -37.80
By element:
Atomic # 1 Polarization: 12.84 SS G_CDS: -4.65 Total: 8.19 kcal
Atomic # 6 Polarization: -5.94 SS G_CDS: -1.94 Total: -7.88 kcal
Atomic # 7 Polarization: -47.83 SS G_CDS: 0.36 Total: -47.47 kcal
Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal
Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal
Total LS contribution 4.15 Total: 4.15 kcal
Total: -30.79 -7.01 -37.80 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000399219496.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.915 kcal
(2) G-P(sol) polarization free energy of solvation -30.785 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.871 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.799 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.884 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds