Wall clock time and date at job start Mon Mar 30 2020 02:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00084 * 2 1 4 4 H 1.48497 * 109.46922 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46952 * 300.00651 * 3 2 1 6 6 H 1.48495 * 109.46917 * 60.00338 * 3 2 1 7 7 C 1.37878 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00538 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99504 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46992 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47190 * 179.97438 * 10 9 7 12 12 C 1.34775 * 119.99848 * 179.97438 * 11 10 9 13 13 O 1.21286 * 120.00064 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.99977 * 180.02562 * 12 11 10 15 15 H 1.08996 * 109.47188 * 40.00225 * 14 12 11 16 16 N 1.46905 * 109.47125 * 160.00003 * 14 12 11 17 17 C 1.53001 * 109.47213 * 279.99847 * 14 12 11 18 18 C 1.52996 * 117.50240 * 248.74774 * 17 14 12 19 19 C 1.53002 * 117.49994 * 180.08490 * 17 14 12 20 20 H 0.96998 * 120.00188 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47250 * 60.00439 * 9 7 2 22 22 H 1.09004 * 109.47423 * 299.99870 * 9 7 2 23 23 H 1.09006 * 109.47141 * 59.99782 * 10 9 7 24 24 H 1.08995 * 109.46926 * 300.00206 * 10 9 7 25 25 H 0.96989 * 120.00034 * 0.02562 * 11 10 9 26 26 H 1.00901 * 110.99869 * 296.04907 * 16 14 12 27 27 H 1.00896 * 110.99543 * 60.00030 * 16 14 12 28 28 H 1.09000 * 115.54496 * 34.42042 * 17 14 12 29 29 H 1.09006 * 117.49510 * 359.97438 * 18 17 14 30 30 H 1.09004 * 117.50079 * 145.01747 * 18 17 14 31 31 H 1.08997 * 117.49669 * 214.98314 * 19 17 14 32 32 H 1.09000 * 117.49343 * 359.97438 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5127 -4.9308 0.0001 12 6 2.1866 -6.0980 -0.0003 13 8 3.3994 -6.0980 -0.0007 14 6 1.4331 -7.4031 -0.0003 15 1 0.5695 -7.3241 -0.6605 16 7 2.3153 -8.4778 -0.4745 17 6 0.9617 -7.7198 1.4204 18 6 1.6155 -8.9047 2.1341 19 6 0.1738 -9.0143 1.6313 20 1 -0.4850 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8897 23 1 2.8719 -3.6044 0.8895 24 1 2.8719 -3.6043 -0.8905 25 1 0.5428 -4.9308 0.0000 26 1 2.5886 -8.3245 -1.4335 27 1 3.1240 -8.5711 0.1216 28 1 0.6846 -6.8575 2.0269 29 1 2.3813 -9.4589 1.5913 30 1 1.7682 -8.8221 3.2102 31 1 -0.6213 -9.0038 2.3767 32 1 -0.0089 -9.6401 0.7577 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399219496.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:38 Heat of formation + Delta-G solvation = -27.883744 kcal Electronic energy + Delta-G solvation = -13761.829901 eV Core-core repulsion = 11336.474751 eV Total energy + Delta-G solvation = -2425.355150 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.78330 -37.36728 -34.96259 -32.91912 -32.84744 -29.84768 -26.81397 -24.47256 -22.42599 -21.43880 -20.81483 -19.56917 -17.11390 -16.82336 -16.38584 -15.52817 -14.82874 -14.55159 -14.37261 -14.18874 -13.33745 -13.09623 -12.67303 -12.32452 -11.47126 -11.39077 -11.23312 -11.07067 -10.67219 -10.57887 -10.37988 -10.29015 -9.91584 -9.69839 -9.33863 -8.68375 -8.59118 -8.39796 -6.12210 -4.15253 2.86586 3.26340 3.33887 3.38667 3.57437 3.85301 4.39129 4.42678 4.69354 4.89234 4.93609 5.22148 5.24940 5.35288 5.50663 5.64104 5.82199 6.11707 6.16464 6.28906 6.29923 6.69168 6.86239 6.91493 7.28846 7.48000 7.57782 7.85676 7.95601 8.24183 8.56622 8.90927 9.49910 10.99418 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.060670 B = 0.005354 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.400291 B = 5228.794454 C = 5448.019543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.120 3.880 11 N -0.717 5.717 12 C 0.475 3.525 13 O -0.557 6.557 14 C 0.104 3.896 15 H 0.104 0.896 16 N -0.821 5.821 17 C -0.153 4.153 18 C -0.170 4.170 19 C -0.162 4.162 20 H 0.262 0.738 21 H 0.022 0.978 22 H 0.022 0.978 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.399 0.601 26 H 0.344 0.656 27 H 0.350 0.650 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.551 -15.060 1.403 15.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.003 4.003 11 N -0.367 5.367 12 C 0.259 3.741 13 O -0.436 6.436 14 C -0.012 4.012 15 H 0.122 0.878 16 N -0.351 5.351 17 C -0.172 4.172 18 C -0.207 4.207 19 C -0.199 4.199 20 H 0.071 0.929 21 H 0.041 0.959 22 H 0.041 0.959 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.232 0.768 26 H 0.157 0.843 27 H 0.165 0.835 28 H 0.128 0.872 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.436 -15.413 1.533 15.495 hybrid contribution 0.607 1.904 -0.122 2.002 sum 0.171 -13.509 1.411 13.584 Atomic orbital electron populations 1.69960 1.06101 1.26811 1.50414 1.24997 0.94889 0.99431 0.94940 0.86458 0.80162 0.83313 0.77656 1.19591 1.20893 1.20890 1.21087 0.93262 0.90398 1.51318 0.92243 1.19331 0.94182 0.91157 0.97852 1.21735 0.96103 0.81793 1.00668 1.46430 1.10612 1.06708 1.72926 1.21834 0.88881 0.86837 0.76554 1.90663 1.14107 1.87870 1.50923 1.20989 0.96420 0.87236 0.96573 0.87829 1.59278 1.24261 1.43565 1.07977 1.22138 1.06183 0.93542 0.95303 1.22932 0.96726 1.01350 0.99701 1.22896 0.94413 0.99330 1.03277 0.92862 0.95932 0.95924 0.92654 0.92672 0.76777 0.84311 0.83514 0.87216 0.87701 0.89265 0.89099 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.56 5.61 -4.04 -0.02 2.53 16 11 N -0.72 -12.39 5.56 -60.29 -0.33 -12.72 16 12 C 0.48 7.87 7.05 -10.99 -0.08 7.79 16 13 O -0.56 -11.22 16.25 5.55 0.09 -11.13 16 14 C 0.10 1.28 3.51 -68.86 -0.24 1.04 16 15 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 16 N -0.82 -9.34 8.02 -5.65 -0.05 -9.39 16 17 C -0.15 -1.75 5.69 -90.62 -0.52 -2.27 16 18 C -0.17 -1.78 9.70 -26.69 -0.26 -2.04 16 19 C -0.16 -1.57 10.18 -26.69 -0.27 -1.84 16 20 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 21 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 24 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.40 5.97 8.47 -40.82 -0.35 5.62 16 26 H 0.34 3.76 9.06 -39.29 -0.36 3.41 16 27 H 0.35 4.19 7.09 -39.29 -0.28 3.91 16 28 H 0.11 1.32 8.11 -51.93 -0.42 0.90 16 29 H 0.10 1.09 6.26 -51.93 -0.33 0.77 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 275.54 15.07 4.15 4.15 Total: -1.00 -30.79 275.54 -7.01 -37.80 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -4.65 Total: 8.19 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -1.94 Total: -7.88 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.36 Total: -47.47 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.79 -7.01 -37.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399219496.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.915 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds