Wall clock time and date at job start Mon Mar 30 2020 02:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.25522 * 2 1 4 4 C 1.55175 * 110.27923 * 237.87513 * 2 1 3 5 5 C 1.54068 * 100.80589 * 205.80917 * 4 2 1 6 6 C 1.53708 * 110.80160 * 152.39099 * 5 4 2 7 7 C 1.55539 * 100.75307 * 87.25550 * 6 5 4 8 8 C 1.54492 * 102.38218 * 32.82824 * 7 6 5 9 9 H 1.09002 * 109.91811 * 98.21724 * 8 7 6 10 10 C 1.50706 * 109.83277 * 219.15649 * 8 7 6 11 11 H 1.07999 * 120.00193 * 359.55733 * 10 8 7 12 12 C 1.37879 * 119.99398 * 179.54814 * 10 8 7 13 13 N 1.31514 * 119.99350 * 180.02562 * 12 10 8 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 8 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 10 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 10 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 10 18 18 O 1.42181 * 111.84993 * 271.48776 * 5 4 2 19 19 C 1.53128 * 103.63051 * 32.85689 * 5 4 2 20 20 O 1.43561 * 107.25339 * 339.88396 * 19 5 4 21 21 H 1.09005 * 109.46754 * 299.41966 * 1 2 3 22 22 H 1.08998 * 109.47156 * 59.41514 * 1 2 3 23 23 H 1.08999 * 109.47132 * 179.42032 * 1 2 3 24 24 H 1.08993 * 111.15101 * 87.92690 * 4 2 1 25 25 H 1.08994 * 111.15061 * 323.69386 * 4 2 1 26 26 H 1.08997 * 111.16008 * 205.12770 * 6 5 4 27 27 H 1.08993 * 111.15992 * 329.34116 * 6 5 4 28 28 H 1.09001 * 110.82128 * 274.60938 * 7 6 5 29 29 H 1.08994 * 110.82279 * 151.05208 * 7 6 5 30 30 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 31 31 H 1.09002 * 109.88583 * 99.28958 * 19 5 4 32 32 H 1.09000 * 109.88731 * 220.47276 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9074 1.0226 0.0000 4 6 2.0679 -0.7740 -1.2327 5 6 3.4459 -1.2250 -0.7119 6 6 3.8941 -2.5213 -1.4056 7 6 4.5980 -1.9466 -2.6679 8 6 5.1894 -0.6197 -2.1422 9 1 6.2415 -0.7555 -1.8917 10 6 5.0480 0.4539 -3.1903 11 1 4.5915 0.2232 -4.1415 12 6 5.5012 1.7308 -2.9346 13 7 5.3773 2.6678 -3.8491 14 14 6.2911 2.1298 -1.2896 15 1 5.2459 2.5767 -0.3341 16 1 6.9635 0.9177 -0.7565 17 1 7.2918 3.2119 -1.4705 18 8 4.4517 -0.2528 -0.9660 19 6 3.2113 -1.4460 0.7851 20 8 2.0285 -0.7154 1.1431 21 1 -0.3633 0.5048 0.8952 22 1 -0.3633 0.5229 -0.8847 23 1 -0.3633 -1.0276 -0.0104 24 1 2.1697 -0.1167 -2.0961 25 1 1.4358 -1.6309 -1.4655 26 1 4.5948 -3.0784 -0.7837 27 1 3.0378 -3.1380 -1.6783 28 1 3.8762 -1.7609 -3.4632 29 1 5.3886 -2.6150 -3.0088 30 1 5.6958 3.5662 -3.6692 31 1 3.0658 -2.5077 0.9848 32 1 4.0636 -1.0730 1.3530 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401578739.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:15 Heat of formation + Delta-G solvation = -96.290305 kcal Electronic energy + Delta-G solvation = -15115.589528 eV Core-core repulsion = 12654.975296 eV Total energy + Delta-G solvation = -2460.614232 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.97742 -37.25307 -32.66939 -31.81385 -31.49506 -30.38053 -26.81225 -25.74969 -23.01096 -20.92660 -20.42072 -19.65032 -16.86836 -16.36918 -15.43917 -15.27803 -14.84147 -14.24612 -13.69824 -13.18725 -12.80443 -12.64642 -12.42587 -12.02787 -11.90142 -11.67171 -11.37590 -11.05957 -10.76686 -10.70602 -10.46678 -10.17779 -9.79665 -9.72881 -9.49869 -9.14914 -8.62840 -8.24133 -6.12525 -4.21480 3.40310 3.46752 3.57167 4.13215 4.45400 4.59398 4.92964 5.14233 5.22633 5.34049 5.35925 5.55974 5.60759 5.73224 5.82685 5.90008 6.00791 6.08087 6.12472 6.28333 6.30374 6.33205 6.42358 6.47166 6.56464 6.75118 7.23566 7.35907 7.59962 8.19845 8.41937 8.87601 9.51765 10.97929 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.031130 B = 0.012518 C = 0.011346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.235413 B = 2236.247425 C = 2467.293511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.077 3.923 3 H 0.073 0.927 4 C -0.159 4.159 5 C 0.082 3.918 6 C -0.143 4.143 7 C -0.132 4.132 8 C 0.164 3.836 9 H 0.044 0.956 10 C -0.530 4.530 11 H 0.077 0.923 12 C 0.084 3.916 13 N -0.893 5.893 14 Si 0.898 3.102 15 H -0.274 1.274 16 H -0.266 1.266 17 H -0.298 1.298 18 O -0.371 6.371 19 C 0.058 3.942 20 O -0.387 6.387 21 H 0.057 0.943 22 H 0.068 0.932 23 H 0.057 0.943 24 H 0.099 0.901 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.265 0.735 31 H 0.073 0.927 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.661 -8.468 6.362 12.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.020 3.980 3 H 0.091 0.909 4 C -0.197 4.197 5 C 0.041 3.959 6 C -0.181 4.181 7 C -0.170 4.170 8 C 0.109 3.891 9 H 0.061 0.939 10 C -0.567 4.567 11 H 0.095 0.905 12 C -0.120 4.120 13 N -0.531 5.531 14 Si 0.727 3.273 15 H -0.200 1.200 16 H -0.190 1.190 17 H -0.226 1.226 18 O -0.292 6.292 19 C -0.019 4.019 20 O -0.307 6.307 21 H 0.076 0.924 22 H 0.087 0.913 23 H 0.076 0.924 24 H 0.117 0.883 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.678 -8.106 6.631 11.913 hybrid contribution 0.482 0.205 0.411 0.665 sum -5.196 -7.901 7.042 11.790 Atomic orbital electron populations 1.21875 0.94337 1.02154 1.02051 1.22982 0.93906 0.96263 0.84818 0.90863 1.23546 0.96017 1.00802 0.99340 1.22514 0.90431 0.89582 0.93408 1.23039 1.00511 0.96521 0.98035 1.23064 0.99781 0.97273 0.96876 1.21006 0.91659 0.92809 0.83600 0.93854 1.21269 1.41323 0.94079 0.99988 0.90543 1.25031 0.94227 0.96084 0.96655 1.69940 1.46187 1.02742 1.34199 0.86438 0.79016 0.77668 0.84157 1.19974 1.19037 1.22592 1.88358 1.46157 1.46456 1.48222 1.23126 0.88228 0.95804 0.94720 1.88390 1.42738 1.65026 1.34583 0.92364 0.91290 0.92378 0.88288 0.90765 0.91168 0.90859 0.90843 0.91727 0.92530 0.90937 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.61 37.16 0.36 -1.66 16 2 C 0.08 1.35 4.09 -25.58 -0.10 1.24 16 3 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 4 C -0.16 -2.82 5.70 -25.02 -0.14 -2.96 16 5 C 0.08 1.54 0.95 -89.63 -0.09 1.45 16 6 C -0.14 -2.33 5.91 -25.01 -0.15 -2.47 16 7 C -0.13 -2.52 6.45 -24.60 -0.16 -2.68 16 8 C 0.16 3.89 2.84 -27.10 -0.08 3.82 16 9 H 0.04 1.06 7.17 -51.93 -0.37 0.68 16 10 C -0.53 -14.81 9.33 -34.44 -0.32 -15.14 16 11 H 0.08 2.27 7.77 -52.49 -0.41 1.87 16 12 C 0.08 2.46 5.47 -17.82 -0.10 2.36 16 13 N -0.89 -27.28 13.96 55.43 0.77 -26.50 16 14 Si 0.90 23.27 26.28 -169.99 -4.47 18.80 16 15 H -0.27 -7.23 7.11 56.52 0.40 -6.82 16 16 H -0.27 -6.69 6.53 56.52 0.37 -6.32 16 17 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 18 O -0.37 -8.74 8.34 -35.23 -0.29 -9.04 16 19 C 0.06 1.00 7.22 37.22 0.27 1.27 16 20 O -0.39 -7.09 11.06 -35.23 -0.39 -7.48 16 21 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.10 1.99 8.14 -51.93 -0.42 1.56 16 25 H 0.07 1.13 7.65 -51.93 -0.40 0.73 16 26 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 27 H 0.07 1.02 7.72 -51.93 -0.40 0.62 16 28 H 0.07 1.43 7.66 -51.93 -0.40 1.04 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.07 1.04 7.82 -51.93 -0.41 0.64 16 32 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 LS Contribution 257.06 15.07 3.87 3.87 Total: -1.00 -30.87 257.06 -5.94 -36.81 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -4.93 Total: -1.69 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -0.51 Total: -14.77 kcal Atomic # 7 Polarization: -27.28 SS G_CDS: 0.77 Total: -26.50 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.68 Total: -16.52 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -4.47 Total: 18.80 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.87 -5.94 -36.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401578739.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.479 kcal (2) G-P(sol) polarization free energy of solvation -30.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds