Wall clock time and date at job start Mon Mar 30 2020 02:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.25522 * 2 1 4 4 C 1.55175 * 110.27923 * 237.87513 * 2 1 3 5 5 C 1.54068 * 100.80589 * 205.80917 * 4 2 1 6 6 C 1.53708 * 110.80160 * 152.39099 * 5 4 2 7 7 C 1.55539 * 100.75307 * 87.25550 * 6 5 4 8 8 C 1.54492 * 102.38218 * 32.82824 * 7 6 5 9 9 H 1.09002 * 109.91811 * 98.21724 * 8 7 6 10 10 C 1.50706 * 109.83277 * 219.15649 * 8 7 6 11 11 H 1.07999 * 120.00193 * 359.55733 * 10 8 7 12 12 C 1.37879 * 119.99398 * 179.54814 * 10 8 7 13 13 N 1.31514 * 119.99350 * 180.02562 * 12 10 8 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 8 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 10 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 10 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 10 18 18 O 1.42181 * 111.84993 * 271.48776 * 5 4 2 19 19 C 1.53128 * 103.63051 * 32.85689 * 5 4 2 20 20 O 1.43561 * 107.25339 * 339.88396 * 19 5 4 21 21 H 1.09005 * 109.46754 * 299.41966 * 1 2 3 22 22 H 1.08998 * 109.47156 * 59.41514 * 1 2 3 23 23 H 1.08999 * 109.47132 * 179.42032 * 1 2 3 24 24 H 1.08993 * 111.15101 * 87.92690 * 4 2 1 25 25 H 1.08994 * 111.15061 * 323.69386 * 4 2 1 26 26 H 1.08997 * 111.16008 * 205.12770 * 6 5 4 27 27 H 1.08993 * 111.15992 * 329.34116 * 6 5 4 28 28 H 1.09001 * 110.82128 * 274.60938 * 7 6 5 29 29 H 1.08994 * 110.82279 * 151.05208 * 7 6 5 30 30 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 31 31 H 1.09002 * 109.88583 * 99.28958 * 19 5 4 32 32 H 1.09000 * 109.88731 * 220.47276 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9074 1.0226 0.0000 4 6 2.0679 -0.7740 -1.2327 5 6 3.4459 -1.2250 -0.7119 6 6 3.8941 -2.5213 -1.4056 7 6 4.5980 -1.9466 -2.6679 8 6 5.1894 -0.6197 -2.1422 9 1 6.2415 -0.7555 -1.8917 10 6 5.0480 0.4539 -3.1903 11 1 4.5915 0.2232 -4.1415 12 6 5.5012 1.7308 -2.9346 13 7 5.3773 2.6678 -3.8491 14 14 6.2911 2.1298 -1.2896 15 1 5.2459 2.5767 -0.3341 16 1 6.9635 0.9177 -0.7565 17 1 7.2918 3.2119 -1.4705 18 8 4.4517 -0.2528 -0.9660 19 6 3.2113 -1.4460 0.7851 20 8 2.0285 -0.7154 1.1431 21 1 -0.3633 0.5048 0.8952 22 1 -0.3633 0.5229 -0.8847 23 1 -0.3633 -1.0276 -0.0104 24 1 2.1697 -0.1167 -2.0961 25 1 1.4358 -1.6309 -1.4655 26 1 4.5948 -3.0784 -0.7837 27 1 3.0378 -3.1380 -1.6783 28 1 3.8762 -1.7609 -3.4632 29 1 5.3886 -2.6150 -3.0088 30 1 5.6958 3.5662 -3.6692 31 1 3.0658 -2.5077 0.9848 32 1 4.0636 -1.0730 1.3530 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401578739.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:15 Heat of formation + Delta-G solvation = -117.693115 kcal Electronic energy + Delta-G solvation = -15116.517624 eV Core-core repulsion = 12654.975296 eV Total energy + Delta-G solvation = -2461.542328 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.46159 -38.79770 -34.80197 -33.24949 -32.91459 -32.05845 -28.56036 -27.09024 -24.69772 -22.34828 -22.06019 -21.17801 -18.98231 -17.81808 -16.99250 -16.85576 -16.49189 -15.91810 -15.13486 -14.82841 -14.60616 -14.35017 -13.86176 -13.49817 -13.35302 -12.96762 -12.86925 -12.71596 -12.48869 -12.36441 -12.05617 -11.78434 -11.55792 -11.35312 -11.27233 -10.86977 -10.52263 -10.05252 -8.37853 -6.48469 1.30633 1.38258 1.46966 2.33212 2.73912 2.88819 3.31683 3.55825 3.78451 3.87768 3.98648 4.19837 4.31185 4.43914 4.47666 4.64019 4.70695 4.71521 4.78595 4.89836 4.92707 4.99695 5.10077 5.12168 5.23547 5.32907 5.48525 5.54754 5.99670 6.14516 6.48402 6.70879 7.28178 8.76537 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.031130 B = 0.012518 C = 0.011346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.235413 B = 2236.247425 C = 2467.293511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.073 3.927 3 H 0.039 0.961 4 C -0.155 4.155 5 C 0.061 3.939 6 C -0.126 4.126 7 C -0.129 4.129 8 C 0.161 3.839 9 H 0.039 0.961 10 C -0.530 4.530 11 H 0.044 0.956 12 C 0.031 3.969 13 N -0.938 5.938 14 Si 0.955 3.045 15 H -0.285 1.285 16 H -0.252 1.252 17 H -0.292 1.292 18 O -0.398 6.398 19 C 0.058 3.942 20 O -0.396 6.396 21 H 0.064 0.936 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.108 0.892 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.267 0.733 31 H 0.113 0.887 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.280 -10.885 7.901 14.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.016 3.984 3 H 0.057 0.943 4 C -0.192 4.192 5 C 0.021 3.979 6 C -0.164 4.164 7 C -0.167 4.167 8 C 0.106 3.894 9 H 0.057 0.943 10 C -0.567 4.567 11 H 0.062 0.938 12 C -0.168 4.168 13 N -0.578 5.578 14 Si 0.782 3.218 15 H -0.211 1.211 16 H -0.176 1.176 17 H -0.219 1.219 18 O -0.319 6.319 19 C -0.018 4.018 20 O -0.317 6.317 21 H 0.083 0.917 22 H 0.096 0.904 23 H 0.095 0.905 24 H 0.083 0.917 25 H 0.126 0.874 26 H 0.113 0.887 27 H 0.125 0.875 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.131 0.869 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.295 -10.541 8.175 14.750 hybrid contribution 0.620 0.935 -0.093 1.126 sum -5.674 -9.606 8.081 13.776 Atomic orbital electron populations 1.21833 0.91290 1.03616 1.02865 1.23011 0.96283 0.94481 0.84671 0.94317 1.23507 0.96389 1.01336 0.97999 1.22948 0.89668 0.90073 0.95172 1.23044 1.01856 0.95444 0.96010 1.22982 1.00340 0.95382 0.97986 1.20881 0.92033 0.93606 0.82913 0.94299 1.21609 1.39684 0.95281 1.00173 0.93766 1.25789 0.95210 0.96294 0.99548 1.70050 1.48326 1.03296 1.36151 0.85544 0.78033 0.77968 0.80232 1.21146 1.17583 1.21858 1.88258 1.47468 1.48709 1.47493 1.23252 0.87697 0.97800 0.93035 1.88381 1.43069 1.65227 1.35004 0.91701 0.90423 0.90511 0.91703 0.87393 0.88742 0.87533 0.92028 0.89486 0.92424 0.86944 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.61 71.98 0.69 -2.80 16 2 C 0.07 2.45 4.09 31.34 0.13 2.58 16 3 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 4 C -0.15 -5.21 5.70 31.70 0.18 -5.03 16 5 C 0.06 2.16 0.95 -10.15 -0.01 2.15 16 6 C -0.13 -3.55 5.91 31.71 0.19 -3.36 16 7 C -0.13 -4.64 6.45 31.98 0.21 -4.43 16 8 C 0.16 7.54 2.84 30.36 0.09 7.63 16 9 H 0.04 1.86 7.17 -2.39 -0.02 1.84 16 10 C -0.53 -30.40 9.33 25.60 0.24 -30.16 16 11 H 0.04 2.75 7.77 -2.91 -0.02 2.72 16 12 C 0.03 1.87 5.47 84.66 0.46 2.33 16 13 N -0.94 -59.26 13.96 21.45 0.30 -58.96 16 14 Si 0.96 48.89 26.28 68.60 1.80 50.69 16 15 H -0.29 -14.96 7.11 99.48 0.71 -14.25 16 16 H -0.25 -12.19 6.53 99.48 0.65 -11.54 16 17 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 18 O -0.40 -18.43 8.34 -148.98 -1.24 -19.67 16 19 C 0.06 1.82 7.22 72.02 0.52 2.34 16 20 O -0.40 -13.57 11.06 -148.98 -1.65 -15.22 16 21 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 22 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 25 H 0.11 2.87 7.65 -2.39 -0.02 2.85 16 26 H 0.09 2.25 8.10 -2.39 -0.02 2.23 16 27 H 0.11 2.34 7.72 -2.39 -0.02 2.32 16 28 H 0.06 2.34 7.66 -2.39 -0.02 2.32 16 29 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 30 H 0.27 15.84 8.31 -92.70 -0.77 15.07 16 31 H 0.11 2.64 7.82 -2.39 -0.02 2.62 16 32 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 Total: -1.00 -68.57 257.06 2.93 -65.64 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: 1.02 Total: 6.28 kcal Atomic # 6 Polarization: -31.45 SS G_CDS: 2.69 Total: -28.76 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: 0.30 Total: -58.96 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -2.89 Total: -34.90 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 1.80 Total: 50.69 kcal Total: -68.57 2.93 -65.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401578739.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.055 kcal (2) G-P(sol) polarization free energy of solvation -68.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds