Wall clock time and date at job start Mon Mar 30 2020 02:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.33487 * 2 1 4 4 C 1.55129 * 110.29297 * 237.90578 * 2 1 3 5 5 C 1.54300 * 100.84026 * 205.58987 * 4 2 1 6 6 C 1.53103 * 110.74175 * 152.38704 * 5 4 2 7 7 C 1.55073 * 103.72168 * 120.73206 * 6 5 4 8 8 C 1.55078 * 102.31264 * 339.05398 * 7 6 5 9 9 H 1.08995 * 110.58593 * 277.93118 * 8 7 6 10 10 C 1.50702 * 110.58231 * 155.03107 * 8 7 6 11 11 H 1.08002 * 119.99698 * 0.02562 * 10 8 7 12 12 C 1.37873 * 119.99909 * 180.02562 * 10 8 7 13 13 N 1.31520 * 119.99572 * 180.02562 * 12 10 8 14 14 Si 1.86793 * 120.00353 * 359.97438 * 12 10 8 15 15 H 1.48508 * 109.47023 * 90.00302 * 14 12 10 16 16 H 1.48502 * 109.47629 * 210.00277 * 14 12 10 17 17 H 1.48497 * 109.47202 * 330.00621 * 14 12 10 18 18 O 1.42584 * 111.13118 * 273.12200 * 5 4 2 19 19 C 1.53354 * 103.36246 * 33.10314 * 5 4 2 20 20 O 1.43501 * 107.32316 * 339.63710 * 19 5 4 21 21 H 1.09001 * 109.46849 * 299.36149 * 1 2 3 22 22 H 1.08996 * 109.46987 * 59.35787 * 1 2 3 23 23 H 1.08991 * 109.47424 * 179.36273 * 1 2 3 24 24 H 1.08998 * 111.14500 * 87.68911 * 4 2 1 25 25 H 1.09005 * 111.14138 * 323.48171 * 4 2 1 26 26 H 1.09003 * 110.57307 * 2.16970 * 6 5 4 27 27 H 1.09001 * 110.70334 * 239.35842 * 6 5 4 28 28 H 1.09002 * 110.87123 * 97.31787 * 7 6 5 29 29 H 1.09003 * 110.87460 * 220.79430 * 7 6 5 30 30 H 0.96998 * 119.99987 * 179.97438 * 13 12 10 31 31 H 1.08994 * 109.87673 * 99.07684 * 19 5 4 32 32 H 1.09006 * 109.87020 * 220.20859 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0680 -0.7731 -1.2326 5 6 3.4506 -1.2203 -0.7139 6 6 3.8979 -2.5107 -1.4059 7 6 5.2317 -2.1168 -2.0920 8 6 5.1157 -0.5728 -2.1784 9 1 4.5198 -0.2810 -3.0431 10 6 6.4828 0.0586 -2.2380 11 1 7.3659 -0.5628 -2.2180 12 6 6.6060 1.4295 -2.3180 13 7 7.7991 1.9804 -2.3706 14 14 5.0786 2.5042 -2.3533 15 1 4.6976 2.8685 -0.9650 16 1 5.3596 3.7386 -3.1296 17 1 3.9643 1.7599 -2.9932 18 8 4.4360 -0.2162 -0.9456 19 6 3.2112 -1.4458 0.7840 20 8 2.0285 -0.7162 1.1422 21 1 -0.3633 0.5039 0.8957 22 1 -0.3633 0.5238 -0.8841 23 1 -0.3634 -1.0275 -0.0114 24 1 2.1659 -0.1160 -2.0968 25 1 1.4380 -1.6321 -1.4637 26 1 3.1627 -2.8221 -2.1479 27 1 4.0622 -3.3028 -0.6753 28 1 6.0846 -2.4086 -1.4792 29 1 5.3016 -2.5572 -3.0867 30 1 7.8859 2.9449 -2.4273 31 1 3.0651 -2.5079 0.9802 32 1 4.0624 -1.0751 1.3552 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401578740.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:17 Heat of formation + Delta-G solvation = -118.592925 kcal Electronic energy + Delta-G solvation = -15024.847096 eV Core-core repulsion = 12563.265750 eV Total energy + Delta-G solvation = -2461.581346 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.45045 -38.74394 -34.87439 -33.16200 -33.00114 -32.06542 -28.63049 -27.09891 -24.67959 -22.67125 -21.69489 -21.13212 -19.13453 -17.93096 -17.21975 -16.57981 -16.28162 -15.85293 -15.37775 -14.88382 -14.70559 -14.61998 -13.80585 -13.45962 -13.35424 -13.00426 -12.81200 -12.63038 -12.43745 -12.34992 -12.17801 -11.78835 -11.58779 -11.38092 -11.24369 -10.91446 -10.51482 -10.25668 -8.42226 -6.54802 1.28035 1.35811 1.43278 2.29165 2.71716 2.83115 3.36288 3.48362 3.79237 3.82613 3.99299 4.15620 4.27766 4.39334 4.44290 4.55578 4.68704 4.71344 4.79643 4.84796 4.91827 4.95678 5.07736 5.10657 5.18840 5.28234 5.41891 5.47830 5.98861 6.14995 6.37544 6.62922 7.20405 8.72202 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.033870 B = 0.012324 C = 0.010199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.497451 B = 2271.364402 C = 2744.749779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.069 3.931 3 H 0.042 0.958 4 C -0.160 4.160 5 C 0.050 3.950 6 C -0.126 4.126 7 C -0.134 4.134 8 C 0.164 3.836 9 H 0.035 0.965 10 C -0.527 4.527 11 H 0.047 0.953 12 C 0.029 3.971 13 N -0.935 5.935 14 Si 0.956 3.044 15 H -0.283 1.283 16 H -0.286 1.286 17 H -0.247 1.247 18 O -0.396 6.396 19 C 0.060 3.940 20 O -0.397 6.397 21 H 0.062 0.938 22 H 0.084 0.916 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.115 0.885 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.270 0.730 31 H 0.109 0.891 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.226 -7.837 1.735 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.012 3.988 3 H 0.060 0.940 4 C -0.198 4.198 5 C 0.010 3.990 6 C -0.164 4.164 7 C -0.172 4.172 8 C 0.110 3.890 9 H 0.052 0.948 10 C -0.564 4.564 11 H 0.065 0.935 12 C -0.172 4.172 13 N -0.574 5.574 14 Si 0.782 3.218 15 H -0.210 1.210 16 H -0.213 1.213 17 H -0.171 1.171 18 O -0.317 6.317 19 C -0.017 4.017 20 O -0.318 6.318 21 H 0.081 0.919 22 H 0.102 0.898 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.133 0.867 26 H 0.118 0.882 27 H 0.115 0.885 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.127 0.873 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.182 -7.508 2.045 17.060 hybrid contribution 0.387 0.898 -0.177 0.993 sum -14.795 -6.610 1.867 16.312 Atomic orbital electron populations 1.21846 0.91014 1.03701 1.03092 1.23077 0.96470 0.94586 0.84699 0.93984 1.23709 0.96023 1.01874 0.98145 1.23003 0.90063 0.90426 0.95526 1.22797 0.97095 0.95909 1.00580 1.22997 0.97553 0.95278 1.01331 1.21312 0.90634 0.93335 0.83766 0.94780 1.21267 0.91855 0.92488 1.50817 0.93515 1.25904 0.98901 0.99777 0.92569 1.70035 1.24772 1.11981 1.50659 0.85552 0.80381 0.77664 0.78212 1.20962 1.21254 1.17110 1.89010 1.50002 1.47567 1.45073 1.23295 0.87456 0.97561 0.93368 1.88378 1.42881 1.65254 1.35269 0.91889 0.89760 0.90602 0.90780 0.86663 0.88162 0.88541 0.92441 0.89699 0.92126 0.87308 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.61 71.98 0.69 -2.33 16 2 C 0.07 2.10 4.09 31.32 0.13 2.23 16 3 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 4 C -0.16 -4.68 5.62 31.76 0.18 -4.50 16 5 C 0.05 1.74 0.96 -10.20 -0.01 1.73 16 6 C -0.13 -3.59 6.26 31.34 0.20 -3.40 16 7 C -0.13 -4.96 6.56 32.02 0.21 -4.75 16 8 C 0.16 7.77 2.55 30.56 0.08 7.85 16 9 H 0.03 1.61 7.05 -2.39 -0.02 1.59 16 10 C -0.53 -30.81 9.40 25.60 0.24 -30.57 16 11 H 0.05 2.96 8.00 -2.91 -0.02 2.93 16 12 C 0.03 1.72 5.47 84.65 0.46 2.18 16 13 N -0.94 -59.19 13.96 21.45 0.30 -58.89 16 14 Si 0.96 47.93 26.58 68.60 1.82 49.76 16 15 H -0.28 -14.59 7.11 99.48 0.71 -13.88 16 16 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 17 H -0.25 -11.45 6.47 99.48 0.64 -10.80 16 18 O -0.40 -18.49 9.00 -148.98 -1.34 -19.83 16 19 C 0.06 1.92 7.17 72.10 0.52 2.44 16 20 O -0.40 -13.39 11.06 -148.98 -1.65 -15.04 16 21 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.12 2.54 7.72 -2.38 -0.02 2.52 16 26 H 0.10 2.27 7.55 -2.39 -0.02 2.25 16 27 H 0.10 2.26 7.39 -2.39 -0.02 2.24 16 28 H 0.06 2.26 8.03 -2.39 -0.02 2.25 16 29 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 31 H 0.11 2.72 7.43 -2.39 -0.02 2.70 16 32 H 0.06 2.02 8.07 -2.38 -0.02 2.00 16 Total: -1.00 -69.24 257.35 2.85 -66.39 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 1.02 Total: 6.73 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 2.69 Total: -29.12 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.30 Total: -58.89 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -2.99 Total: -34.86 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 1.82 Total: 49.76 kcal Total: -69.24 2.85 -66.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401578740.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.201 kcal (2) G-P(sol) polarization free energy of solvation -69.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds