Wall clock time and date at job start Mon Mar 30 2020 02:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48497 * 109.46882 * 240.00023 * 3 2 1 5 5 H 1.48508 * 109.47093 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47428 * 119.99813 * 3 2 1 7 7 C 1.38948 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99962 * 180.27696 * 7 2 1 9 9 N 1.37099 * 119.99838 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99624 * 179.97438 * 9 7 2 11 11 O 1.21300 * 120.00199 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99888 * 180.02562 * 10 9 7 13 13 H 1.08993 * 109.46804 * 299.99733 * 12 10 9 14 14 C 1.52993 * 109.47407 * 59.99873 * 12 10 9 15 15 N 1.46899 * 109.47502 * 184.94359 * 14 12 10 16 16 C 1.53001 * 109.46985 * 179.97438 * 12 10 9 17 17 C 1.53006 * 109.46978 * 65.93878 * 16 12 10 18 18 C 1.53003 * 117.49724 * 243.28442 * 17 16 12 19 19 C 1.52997 * 60.00073 * 252.51440 * 18 17 16 20 20 H 0.96998 * 120.00092 * 0.02562 * 1 2 3 21 21 H 0.96999 * 120.00183 * 359.97438 * 9 7 2 22 22 H 1.09000 * 109.46969 * 304.94754 * 14 12 10 23 23 H 1.09004 * 109.47297 * 64.94031 * 14 12 10 24 24 H 1.00898 * 110.99564 * 56.04488 * 15 14 12 25 25 H 1.00899 * 111.00186 * 179.97438 * 15 14 12 26 26 H 1.09003 * 109.47018 * 185.93852 * 16 12 10 27 27 H 1.09001 * 109.47211 * 305.93909 * 16 12 10 28 28 H 1.08997 * 115.54837 * 28.99760 * 17 16 12 29 29 H 1.09004 * 117.49713 * 0.02562 * 18 17 16 30 30 H 1.08996 * 117.49379 * 145.02330 * 18 17 16 31 31 H 1.09004 * 117.49753 * 252.51479 * 19 18 17 32 32 H 1.09001 * 117.50129 * 107.48959 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0051 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2436 -4.8629 0.0000 13 1 0.6167 -4.9208 0.8897 14 6 0.3645 -4.9437 -1.2496 15 7 -0.4579 -6.1596 -1.1920 16 6 2.2379 -6.0258 -0.0006 17 6 3.0163 -6.0318 1.3167 18 6 4.5279 -5.8061 1.2449 19 6 3.9765 -7.1970 1.5644 20 1 -0.4850 0.8400 -0.0004 21 1 0.3533 -2.3906 0.0005 22 1 -0.2836 -4.0685 -1.2950 23 1 0.9965 -4.9742 -2.1372 24 1 -1.0057 -6.1858 -0.3451 25 1 -1.0483 -6.2358 -2.0066 26 1 1.6971 -6.9662 -0.1073 27 1 2.9324 -5.9097 -0.8326 28 1 2.4865 -5.6245 2.1777 29 1 4.9677 -5.6528 0.2594 30 1 4.9928 -5.2499 2.0589 31 1 4.0787 -7.5559 2.5886 32 1 4.0536 -7.9593 0.7891 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405075928.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:11 Heat of formation + Delta-G solvation = -28.121934 kcal Electronic energy + Delta-G solvation = -14309.482604 eV Core-core repulsion = 11884.117125 eV Total energy + Delta-G solvation = -2425.365479 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.82931 -36.66900 -34.93639 -33.86999 -31.16289 -30.47979 -26.02846 -24.46430 -21.90482 -21.67917 -20.09131 -18.78435 -17.84407 -16.37921 -15.37417 -14.97067 -14.60965 -14.16677 -14.11268 -13.63100 -13.17738 -12.72986 -12.42916 -11.89265 -11.39999 -11.31541 -11.05444 -11.03402 -10.73316 -10.43103 -10.39283 -10.18340 -9.65243 -9.50076 -9.30665 -8.48545 -8.20372 -7.91934 -6.39516 -3.79661 3.20623 3.26004 3.30613 3.93655 4.19219 4.38081 4.76198 5.04680 5.14557 5.31447 5.41443 5.52189 5.59137 5.64673 5.90759 5.95472 6.02317 6.19373 6.23888 6.45299 6.53344 6.57969 6.68736 6.74291 6.92261 7.26051 7.56716 7.57755 8.09276 8.65214 9.21198 9.59166 10.11553 10.78489 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.031944 B = 0.008780 C = 0.007162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.313382 B = 3188.156298 C = 3908.835916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.298 4.298 8 H 0.102 0.898 9 N -0.566 5.566 10 C 0.446 3.554 11 O -0.579 6.579 12 C -0.094 4.094 13 H 0.077 0.923 14 C 0.069 3.931 15 N -0.848 5.848 16 C -0.054 4.054 17 C -0.132 4.132 18 C -0.148 4.148 19 C -0.201 4.201 20 H 0.271 0.729 21 H 0.390 0.610 22 H 0.035 0.965 23 H 0.073 0.927 24 H 0.338 0.662 25 H 0.338 0.662 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.944 -9.608 0.159 9.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.203 5.203 10 C 0.231 3.769 11 O -0.463 6.463 12 C -0.116 4.116 13 H 0.095 0.905 14 C -0.062 4.062 15 N -0.377 5.377 16 C -0.092 4.092 17 C -0.150 4.150 18 C -0.185 4.185 19 C -0.238 4.238 20 H 0.081 0.919 21 H 0.223 0.777 22 H 0.053 0.947 23 H 0.092 0.908 24 H 0.150 0.850 25 H 0.150 0.850 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.450 -9.811 0.148 9.822 hybrid contribution -1.094 1.687 0.085 2.013 sum -0.644 -8.124 0.233 8.152 Atomic orbital electron populations 1.69601 1.05922 1.28133 1.50997 1.25237 0.95604 0.99650 0.97519 0.85947 0.78775 0.80645 0.79028 1.19959 1.21017 1.19967 1.19666 0.93325 0.82412 1.47353 0.88026 1.41933 1.09041 1.04694 1.64591 1.19852 0.88340 0.84662 0.84001 1.90520 1.13595 1.87072 1.55078 1.21248 0.97208 0.95142 0.98033 0.90498 1.21780 0.95509 0.90480 0.98472 1.58773 1.30595 1.41004 1.07356 1.20820 0.96227 0.96625 0.95500 1.22104 0.92712 1.01046 0.99160 1.22723 0.96721 0.96545 1.02542 1.23020 1.07103 0.92313 1.01358 0.91923 0.77675 0.94698 0.90812 0.85039 0.85043 0.90952 0.91802 0.89031 0.88910 0.89936 0.89871 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.78 13.05 55.50 0.72 -24.05 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.24 29.55 -169.99 -5.02 16.21 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.57 -14.34 5.15 -10.96 -0.06 -14.40 16 10 C 0.45 10.44 6.86 -10.98 -0.08 10.36 16 11 O -0.58 -15.17 13.61 5.54 0.08 -15.10 16 12 C -0.09 -1.69 2.29 -91.77 -0.21 -1.90 16 13 H 0.08 1.31 8.13 -51.93 -0.42 0.88 16 14 C 0.07 1.09 6.12 -3.83 -0.02 1.07 16 15 N -0.85 -10.62 8.98 -10.37 -0.09 -10.72 16 16 C -0.05 -0.92 4.56 -26.73 -0.12 -1.04 16 17 C -0.13 -2.25 4.77 -90.61 -0.43 -2.68 16 18 C -0.15 -2.56 8.97 -26.73 -0.24 -2.80 16 19 C -0.20 -2.91 10.25 -26.73 -0.27 -3.18 16 20 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 21 H 0.39 9.56 7.26 -40.82 -0.30 9.26 16 22 H 0.03 0.58 7.43 -51.93 -0.39 0.20 16 23 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.34 3.81 8.99 -39.29 -0.35 3.46 16 25 H 0.34 3.58 9.08 -39.29 -0.36 3.22 16 26 H 0.07 1.12 7.59 -51.93 -0.39 0.72 16 27 H 0.06 1.19 7.65 -51.93 -0.40 0.79 16 28 H 0.09 1.60 8.06 -51.93 -0.42 1.18 16 29 H 0.09 1.69 8.03 -51.93 -0.42 1.28 16 30 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 270.93 15.07 4.08 4.08 Total: -1.00 -29.72 270.93 -6.55 -36.27 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -4.64 Total: 15.88 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -1.62 Total: -8.18 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.57 Total: -49.17 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.08 Total: -15.10 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.72 -6.55 -36.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405075928.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.145 kcal (2) G-P(sol) polarization free energy of solvation -29.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds