Wall clock time and date at job start Mon Mar 30 2020 02:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48497 * 109.46882 * 240.00023 * 3 2 1 5 5 H 1.48508 * 109.47093 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47428 * 119.99813 * 3 2 1 7 7 C 1.38948 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99962 * 180.27696 * 7 2 1 9 9 N 1.37099 * 119.99838 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99624 * 179.97438 * 9 7 2 11 11 O 1.21300 * 120.00199 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99888 * 180.02562 * 10 9 7 13 13 H 1.08993 * 109.46804 * 299.99733 * 12 10 9 14 14 C 1.52993 * 109.47407 * 59.99873 * 12 10 9 15 15 N 1.46899 * 109.47502 * 184.94359 * 14 12 10 16 16 C 1.53001 * 109.46985 * 179.97438 * 12 10 9 17 17 C 1.53006 * 109.46978 * 65.93878 * 16 12 10 18 18 C 1.53003 * 117.49724 * 243.28442 * 17 16 12 19 19 C 1.52997 * 60.00073 * 252.51440 * 18 17 16 20 20 H 0.96998 * 120.00092 * 0.02562 * 1 2 3 21 21 H 0.96999 * 120.00183 * 359.97438 * 9 7 2 22 22 H 1.09000 * 109.46969 * 304.94754 * 14 12 10 23 23 H 1.09004 * 109.47297 * 64.94031 * 14 12 10 24 24 H 1.00898 * 110.99564 * 56.04488 * 15 14 12 25 25 H 1.00899 * 111.00186 * 179.97438 * 15 14 12 26 26 H 1.09003 * 109.47018 * 185.93852 * 16 12 10 27 27 H 1.09001 * 109.47211 * 305.93909 * 16 12 10 28 28 H 1.08997 * 115.54837 * 28.99760 * 17 16 12 29 29 H 1.09004 * 117.49713 * 0.02562 * 18 17 16 30 30 H 1.08996 * 117.49379 * 145.02330 * 18 17 16 31 31 H 1.09004 * 117.49753 * 252.51479 * 19 18 17 32 32 H 1.09001 * 117.50129 * 107.48959 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0051 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2436 -4.8629 0.0000 13 1 0.6167 -4.9208 0.8897 14 6 0.3645 -4.9437 -1.2496 15 7 -0.4579 -6.1596 -1.1920 16 6 2.2379 -6.0258 -0.0006 17 6 3.0163 -6.0318 1.3167 18 6 4.5279 -5.8061 1.2449 19 6 3.9765 -7.1970 1.5644 20 1 -0.4850 0.8400 -0.0004 21 1 0.3533 -2.3906 0.0005 22 1 -0.2836 -4.0685 -1.2950 23 1 0.9965 -4.9742 -2.1372 24 1 -1.0057 -6.1858 -0.3451 25 1 -1.0483 -6.2358 -2.0066 26 1 1.6971 -6.9662 -0.1073 27 1 2.9324 -5.9097 -0.8326 28 1 2.4865 -5.6245 2.1777 29 1 4.9677 -5.6528 0.2594 30 1 4.9928 -5.2499 2.0589 31 1 4.0787 -7.5559 2.5886 32 1 4.0536 -7.9593 0.7891 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405075928.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:11 Heat of formation + Delta-G solvation = -49.429347 kcal Electronic energy + Delta-G solvation = -14310.406562 eV Core-core repulsion = 11884.117125 eV Total energy + Delta-G solvation = -2426.289437 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.57147 -38.15031 -36.27581 -35.88666 -33.17161 -31.84122 -27.70287 -26.16546 -23.36707 -23.04182 -21.46655 -20.54558 -19.83004 -18.04791 -16.81870 -16.59320 -16.16359 -15.82708 -15.57650 -15.22039 -14.64942 -14.43629 -13.88723 -13.64303 -13.10813 -12.95492 -12.71837 -12.42536 -12.28032 -12.15432 -12.09898 -11.80355 -11.47400 -10.94675 -10.70482 -10.10967 -9.96474 -9.57125 -8.45772 -5.93427 1.38401 1.39762 1.50541 2.09150 2.29579 3.07325 3.18453 3.26319 3.69134 3.82718 4.10777 4.16018 4.22607 4.27274 4.47369 4.59849 4.67218 4.85210 4.87631 5.01585 5.19085 5.24682 5.29706 5.37384 5.42802 5.54252 6.02343 6.19151 6.61936 6.66459 7.14928 7.60154 8.16383 8.71801 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.031944 B = 0.008780 C = 0.007162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.313382 B = 3188.156298 C = 3908.835916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.015 4.015 3 Si 0.990 3.010 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.331 4.331 8 H 0.079 0.921 9 N -0.576 5.576 10 C 0.444 3.556 11 O -0.610 6.610 12 C -0.084 4.084 13 H 0.093 0.907 14 C 0.080 3.920 15 N -0.839 5.839 16 C -0.044 4.044 17 C -0.151 4.151 18 C -0.173 4.173 19 C -0.162 4.162 20 H 0.276 0.724 21 H 0.393 0.607 22 H 0.025 0.975 23 H 0.063 0.937 24 H 0.349 0.651 25 H 0.353 0.647 26 H 0.096 0.904 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.670 -10.607 0.374 10.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.214 4.214 3 Si 0.814 3.186 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.461 4.461 8 H 0.097 0.903 9 N -0.213 5.213 10 C 0.231 3.769 11 O -0.495 6.495 12 C -0.106 4.106 13 H 0.111 0.889 14 C -0.052 4.052 15 N -0.370 5.370 16 C -0.082 4.082 17 C -0.170 4.170 18 C -0.210 4.210 19 C -0.199 4.199 20 H 0.086 0.914 21 H 0.226 0.774 22 H 0.043 0.957 23 H 0.081 0.919 24 H 0.162 0.838 25 H 0.167 0.833 26 H 0.114 0.886 27 H 0.062 0.938 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.123 0.877 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.305 -10.833 0.358 10.844 hybrid contribution -0.861 1.942 0.021 2.125 sum -1.166 -8.891 0.379 8.975 Atomic orbital electron populations 1.69665 1.06804 1.29188 1.50828 1.25997 0.96511 1.02313 0.96558 0.85034 0.77790 0.76919 0.78882 1.19765 1.19519 1.19825 1.19645 0.92690 0.84180 1.49541 0.90318 1.41989 1.09076 1.04762 1.65481 1.20839 0.88319 0.85910 0.81834 1.90502 1.15333 1.87847 1.55865 1.21190 0.97437 0.92148 0.99845 0.88900 1.21525 0.95326 0.91640 0.96701 1.58667 1.31056 1.38526 1.08757 1.20761 0.95660 0.96986 0.94790 1.22176 0.92436 1.03348 0.98992 1.22672 0.97166 0.99688 1.01511 1.23086 1.02861 0.90881 1.03086 0.91428 0.77369 0.95690 0.91890 0.83792 0.83346 0.88553 0.93814 0.89641 0.90697 0.90684 0.87690 0.87858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.38 13.05 21.66 0.28 -50.10 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 3 Si 0.99 43.46 29.55 68.60 2.03 45.49 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.33 -18.94 9.68 84.04 0.81 -18.13 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.58 -29.77 5.15 -306.98 -1.58 -31.35 16 10 C 0.44 21.12 6.86 87.66 0.60 21.72 16 11 O -0.61 -32.95 13.61 -3.09 -0.04 -32.99 16 12 C -0.08 -2.96 2.29 -11.54 -0.03 -2.99 16 13 H 0.09 3.00 8.13 -2.39 -0.02 2.98 16 14 C 0.08 2.44 6.12 86.30 0.53 2.96 16 15 N -0.84 -18.78 8.98 -186.73 -1.68 -20.46 16 16 C -0.04 -1.45 4.56 30.60 0.14 -1.31 16 17 C -0.15 -5.00 4.77 -10.79 -0.05 -5.05 16 18 C -0.17 -5.99 8.97 30.59 0.27 -5.71 16 19 C -0.16 -4.30 10.25 30.59 0.31 -3.99 16 20 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 21 H 0.39 19.52 7.26 -92.71 -0.67 18.84 16 22 H 0.02 0.81 7.43 -2.39 -0.02 0.80 16 23 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 24 H 0.35 6.80 8.99 -89.70 -0.81 5.99 16 25 H 0.35 6.49 9.08 -89.69 -0.81 5.67 16 26 H 0.10 2.70 7.59 -2.39 -0.02 2.68 16 27 H 0.04 1.61 7.65 -2.39 -0.02 1.59 16 28 H 0.09 2.91 8.06 -2.39 -0.02 2.90 16 29 H 0.07 2.82 8.03 -2.38 -0.02 2.80 16 30 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -64.09 270.93 0.92 -63.17 By element: Atomic # 1 Polarization: 40.20 SS G_CDS: -1.15 Total: 39.04 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: 3.06 Total: -12.81 kcal Atomic # 7 Polarization: -98.93 SS G_CDS: -2.97 Total: -101.91 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -0.04 Total: -32.99 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -64.09 0.92 -63.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405075928.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.744 kcal (2) G-P(sol) polarization free energy of solvation -64.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds