Wall clock time and date at job start Mon Mar 30 2020 02:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00196 * 2 1 4 4 H 1.48504 * 109.46794 * 274.82811 * 3 2 1 5 5 H 1.48511 * 109.46769 * 34.82282 * 3 2 1 6 6 H 1.48491 * 109.47550 * 154.82382 * 3 2 1 7 7 C 1.38815 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99900 * 163.50445 * 7 2 1 9 9 N 1.36938 * 119.99936 * 343.50431 * 7 2 1 10 10 C 1.46853 * 120.22317 * 333.63224 * 9 7 2 11 11 C 1.53807 * 109.87053 * 226.83688 * 10 9 7 12 12 N 1.45773 * 107.76957 * 308.64110 * 11 10 9 13 13 C 1.47167 * 116.16058 * 183.19063 * 12 11 10 14 14 C 1.55146 * 103.58858 * 197.71676 * 13 12 11 15 15 H 1.09006 * 110.43290 * 265.08013 * 14 13 12 16 16 O 1.42895 * 110.34396 * 142.85977 * 14 13 12 17 17 C 1.54942 * 104.94359 * 23.98886 * 14 13 12 18 18 C 1.48792 * 109.49772 * 66.16622 * 12 11 10 19 19 H 1.08998 * 110.51342 * 50.24681 * 18 12 11 20 20 C 1.47988 * 119.56832 * 154.20730 * 9 7 2 21 21 H 0.97001 * 119.99589 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.40340 * 106.71680 * 10 9 7 23 23 H 1.08999 * 109.40615 * 346.95618 * 10 9 7 24 24 H 1.08995 * 109.80026 * 189.07049 * 11 10 9 25 25 H 1.08997 * 109.84912 * 68.23152 * 11 10 9 26 26 H 1.09000 * 110.59691 * 79.18936 * 13 12 11 27 27 H 1.09002 * 110.72965 * 316.30894 * 13 12 11 28 28 H 0.96696 * 114.00095 * 64.48200 * 16 14 13 29 29 H 1.08995 * 110.47817 * 243.69166 * 17 14 13 30 30 H 1.09001 * 110.58753 * 121.12553 * 17 14 13 31 31 H 1.08998 * 111.48893 * 10.81747 * 20 9 7 32 32 H 1.09005 * 108.67852 * 249.31753 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3957 2.1053 -1.3952 5 1 1.5023 2.6211 0.7996 6 1 3.5950 1.4130 0.5955 7 6 2.0103 -1.2022 0.0005 8 1 3.0570 -1.2215 -0.2650 9 7 1.3679 -2.3635 0.3378 10 6 0.1953 -2.3300 1.2213 11 6 0.3309 -3.4070 2.3110 12 7 0.6293 -4.6722 1.6514 13 6 0.7257 -5.8525 2.5250 14 6 1.4799 -6.8908 1.6532 15 1 0.7727 -7.5443 1.1424 16 8 2.3737 -7.6609 2.4594 17 6 2.2737 -6.0471 0.6242 18 6 1.9710 -4.5950 1.0128 19 1 2.7118 -4.2288 1.7236 20 6 1.8706 -3.6541 -0.1836 21 1 -0.4849 0.8401 -0.0004 22 1 -0.7047 -2.5184 0.6360 23 1 0.1226 -1.3484 1.6895 24 1 -0.6038 -3.4910 2.8654 25 1 1.1413 -3.1452 2.9913 26 1 -0.2673 -6.2192 2.7852 27 1 1.2956 -5.6210 3.4249 28 1 1.9321 -8.2094 3.1221 29 1 1.9240 -6.2517 -0.3876 30 1 3.3418 -6.2487 0.7057 31 1 2.8479 -3.5416 -0.6529 32 1 1.1517 -4.0430 -0.9048 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405361915.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:54 Heat of formation + Delta-G solvation = -11.782741 kcal Electronic energy + Delta-G solvation = -14811.956824 eV Core-core repulsion = 12387.299866 eV Total energy + Delta-G solvation = -2424.656958 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.39818 -36.54630 -34.42327 -31.74866 -31.32087 -28.24096 -27.38232 -24.72526 -22.40819 -21.46419 -20.50060 -19.11156 -17.38477 -16.62660 -15.34628 -14.81741 -14.45723 -14.08656 -13.83281 -13.60549 -12.88950 -12.79040 -12.67760 -12.04696 -11.50859 -11.26508 -11.01151 -10.72701 -10.62840 -10.40602 -10.20828 -10.20332 -9.78829 -9.72118 -9.55123 -8.47353 -7.94228 -6.64880 -5.75387 -3.16114 3.38978 3.46023 3.48641 4.11833 4.51700 4.68497 4.84300 4.99766 5.22711 5.39369 5.48997 5.63249 5.80271 5.90803 5.95158 6.05352 6.15644 6.25924 6.30940 6.40515 6.51820 6.68609 6.92614 7.26148 7.45440 7.67329 7.69632 7.73126 7.85622 8.45233 9.25092 9.87294 10.42897 11.33508 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.063546 B = 0.008119 C = 0.007674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.522280 B = 3448.031844 C = 3647.760298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.255 4.255 8 H 0.066 0.934 9 N -0.598 5.598 10 C 0.188 3.812 11 C 0.031 3.969 12 N -0.514 5.514 13 C 0.008 3.992 14 C 0.100 3.900 15 H 0.065 0.935 16 O -0.568 6.568 17 C -0.109 4.109 18 C 0.050 3.950 19 H 0.049 0.951 20 C 0.161 3.839 21 H 0.253 0.747 22 H 0.028 0.972 23 H 0.083 0.917 24 H 0.062 0.938 25 H 0.025 0.975 26 H 0.074 0.926 27 H 0.042 0.958 28 H 0.373 0.627 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.329 -11.529 4.549 12.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.198 4.198 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.322 5.322 10 C 0.062 3.938 11 C -0.099 4.099 12 N -0.239 5.239 13 C -0.121 4.121 14 C 0.040 3.960 15 H 0.083 0.917 16 O -0.372 6.372 17 C -0.147 4.147 18 C -0.060 4.060 19 H 0.067 0.933 20 C 0.035 3.965 21 H 0.063 0.937 22 H 0.046 0.954 23 H 0.102 0.898 24 H 0.081 0.919 25 H 0.043 0.957 26 H 0.093 0.907 27 H 0.060 0.940 28 H 0.220 0.780 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.217 -11.122 3.821 11.823 hybrid contribution 0.468 0.780 1.104 1.431 sum 1.685 -10.342 4.925 11.578 Atomic orbital electron populations 1.70048 1.05189 1.25369 1.54359 1.25019 0.95315 0.98311 1.01112 0.86293 0.79159 0.83809 0.77611 1.21449 1.21579 1.20518 1.19261 0.92525 0.84949 1.41693 0.91642 1.44258 1.33177 1.01251 1.53495 1.20805 0.88965 0.95229 0.88815 1.22921 0.98767 0.90191 0.97989 1.64028 1.28138 1.02947 1.28830 1.23578 0.99838 0.93242 0.95467 1.22858 0.90694 0.91352 0.91057 0.91685 1.86550 1.37038 1.61671 1.51965 1.22195 1.00386 0.93977 0.98148 1.23019 0.89731 0.94438 0.98784 0.93334 1.20983 0.97541 0.85963 0.92048 0.93680 0.95379 0.89837 0.91933 0.95690 0.90722 0.93963 0.77996 0.90077 0.90547 0.92345 0.95267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.64 11.14 55.49 0.62 -26.02 16 2 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 3 Si 0.90 21.94 29.58 -169.99 -5.03 16.91 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.25 -7.15 9.58 -15.06 -0.14 -7.29 16 8 H 0.07 1.80 7.87 -52.48 -0.41 1.38 16 9 N -0.60 -15.56 3.08 -171.52 -0.53 -16.09 16 10 C 0.19 4.66 5.24 -3.43 -0.02 4.65 16 11 C 0.03 0.63 5.97 -4.01 -0.02 0.60 16 12 N -0.51 -9.65 4.86 -223.98 -1.09 -10.74 16 13 C 0.01 0.12 6.43 -2.54 -0.02 0.10 16 14 C 0.10 1.37 4.46 -24.57 -0.11 1.26 16 15 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 16 O -0.57 -7.25 13.30 -35.23 -0.47 -7.71 16 17 C -0.11 -1.67 6.43 -25.54 -0.16 -1.84 16 18 C 0.05 0.94 2.66 -66.73 -0.18 0.77 16 19 H 0.05 1.00 7.98 -51.93 -0.41 0.58 16 20 C 0.16 3.51 6.17 -3.46 -0.02 3.49 16 21 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 22 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.08 2.27 6.24 -51.93 -0.32 1.95 16 24 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.02 0.52 7.98 -51.93 -0.41 0.11 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.04 0.65 8.09 -51.93 -0.42 0.23 16 28 H 0.37 2.98 9.12 45.56 0.42 3.40 16 29 H 0.08 1.18 7.98 -51.93 -0.41 0.76 16 30 H 0.08 1.15 8.00 -51.93 -0.42 0.73 16 31 H 0.06 1.22 8.00 -51.93 -0.42 0.80 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 255.42 15.07 3.85 3.85 Total: -1.00 -31.17 255.42 -7.47 -38.64 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -4.06 Total: -0.52 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -0.76 Total: 1.67 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -1.00 Total: -52.84 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.47 Total: -7.71 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.17 -7.47 -38.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405361915.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.860 kcal (2) G-P(sol) polarization free energy of solvation -31.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds