Wall clock time and date at job start Mon Mar 30 2020 02:59:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31623 * 1
3 3 Si 1.86797 * 120.00216 * 2 1
4 4 H 1.48500 * 109.47189 * 270.00210 * 3 2 1
5 5 H 1.48496 * 109.47295 * 30.00113 * 3 2 1
6 6 H 1.48500 * 109.47174 * 150.00193 * 3 2 1
7 7 C 1.38817 * 119.99552 * 180.02562 * 2 1 3
8 8 H 1.08005 * 119.99673 * 163.50296 * 7 2 1
9 9 N 1.36936 * 120.00174 * 343.50294 * 7 2 1
10 10 C 1.46857 * 120.22430 * 333.61024 * 9 7 2
11 11 C 1.53798 * 109.86300 * 226.88511 * 10 9 7
12 12 N 1.45771 * 107.77340 * 308.63320 * 11 10 9
13 13 C 1.47168 * 116.16039 * 183.19781 * 12 11 10
14 14 C 1.55139 * 103.58317 * 197.70286 * 13 12 11
15 15 H 1.09001 * 110.34445 * 142.97218 * 14 13 12
16 16 O 1.42909 * 110.34495 * 265.12765 * 14 13 12
17 17 C 1.54938 * 105.03588 * 24.04645 * 14 13 12
18 18 C 1.48788 * 109.50187 * 66.17075 * 12 11 10
19 19 H 1.09004 * 110.51521 * 49.44096 * 18 12 11
20 20 C 1.47680 * 120.22620 * 153.63201 * 9 7 2
21 21 H 0.97002 * 119.99234 * 359.97438 * 1 2 3
22 22 H 1.08996 * 109.40438 * 347.01060 * 10 9 7
23 23 H 1.09004 * 109.40470 * 106.76236 * 10 9 7
24 24 H 1.09006 * 109.80112 * 189.06562 * 11 10 9
25 25 H 1.09000 * 109.79877 * 68.20801 * 11 10 9
26 26 H 1.09008 * 110.59673 * 79.17995 * 13 12 11
27 27 H 1.09000 * 110.73545 * 316.29234 * 13 12 11
28 28 H 0.96699 * 114.00227 * 297.11646 * 16 14 13
29 29 H 1.09003 * 110.47687 * 121.02119 * 17 14 13
30 30 H 1.08999 * 110.47831 * 243.63568 * 17 14 13
31 31 H 1.09000 * 110.01592 * 10.70736 * 20 9 7
32 32 H 1.09007 * 110.01632 * 249.28141 * 20 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4978 2.0464 -1.4001
5 1 1.4478 2.6526 0.7000
6 1 3.5478 1.4401 0.7000
7 6 2.0102 -1.2022 -0.0005
8 1 3.0569 -1.2214 -0.2662
9 7 1.3678 -2.3639 0.3357
10 6 0.1955 -2.3311 1.2197
11 6 0.3320 -3.4085 2.3087
12 7 0.6305 -4.6733 1.6484
13 6 0.7276 -5.8540 2.5216
14 6 1.4815 -6.8916 1.6488
15 1 2.1623 -7.4806 2.2634
16 8 0.5523 -7.7465 0.9793
17 6 2.2765 -6.0494 0.6197
18 6 1.9718 -4.5956 1.0093
19 1 2.7102 -4.2160 1.7157
20 6 1.8493 -3.6581 -0.1878
21 1 -0.4849 0.8401 0.0004
22 1 0.1226 -1.3497 1.6882
23 1 -0.7047 -2.5195 0.6346
24 1 -0.6024 -3.4931 2.8636
25 1 1.1431 -3.1461 2.9880
26 1 -0.2652 -6.2210 2.7821
27 1 1.2981 -5.6228 3.4212
28 1 0.0102 -8.2815 1.5752
29 1 3.3441 -6.2525 0.7040
30 1 1.9272 -6.2546 -0.3923
31 1 2.8221 -3.5299 -0.6624
32 1 1.1334 -4.0602 -0.9048
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000405361916.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:59:56
Heat of formation + Delta-G solvation = -10.824256 kcal
Electronic energy + Delta-G solvation = -14850.454029 eV
Core-core repulsion = 12425.838634 eV
Total energy + Delta-G solvation = -2424.615395 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 212.127 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-39.38241 -36.45284 -34.36083 -31.72884 -31.31068 -28.23482 -27.40181 -24.72896
-22.38510 -21.44255 -20.49134 -19.15324 -17.08049 -16.55575 -15.38940 -14.93287
-14.75132 -14.30629 -13.67613 -13.17940 -12.84617 -12.69847 -12.60240 -11.94381
-11.54292 -11.29636 -11.00825 -10.77774 -10.59072 -10.40604 -10.28017 -10.11538
-9.74064 -9.70391 -9.54486 -8.45761 -7.86815 -6.63759 -5.74658 -3.16031
3.39203 3.45846 3.48098 4.34018 4.43729 4.55758 4.83760 5.01579
5.29504 5.42121 5.48810 5.63042 5.74616 5.89697 5.93124 6.02079
6.16185 6.22218 6.33070 6.44877 6.55526 6.71281 6.97088 7.28578
7.50564 7.72236 7.74946 7.80125 7.87958 8.46210 9.25390 9.88169
10.45057 11.33989
Molecular weight = 212.13amu
Principal moments of inertia in cm(-1)
A = 0.065103 B = 0.008227 C = 0.007804
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 429.981895 B = 3402.768895 C = 3587.149637
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.904 5.904
2 C 0.001 3.999
3 Si 0.902 3.098
4 H -0.287 1.287
5 H -0.290 1.290
6 H -0.280 1.280
7 C -0.254 4.254
8 H 0.066 0.934
9 N -0.597 5.597
10 C 0.185 3.815
11 C 0.030 3.970
12 N -0.510 5.510
13 C 0.008 3.992
14 C 0.103 3.897
15 H 0.056 0.944
16 O -0.557 6.557
17 C -0.109 4.109
18 C 0.049 3.951
19 H 0.049 0.951
20 C 0.161 3.839
21 H 0.253 0.747
22 H 0.083 0.917
23 H 0.028 0.972
24 H 0.062 0.938
25 H 0.024 0.976
26 H 0.077 0.923
27 H 0.037 0.963
28 H 0.371 0.629
29 H 0.072 0.928
30 H 0.086 0.914
31 H 0.055 0.945
32 H 0.031 0.969
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.460 -11.468 5.474 12.944
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.549 5.549
2 C -0.198 4.198
3 Si 0.732 3.268
4 H -0.214 1.214
5 H -0.216 1.216
6 H -0.206 1.206
7 C -0.384 4.384
8 H 0.084 0.916
9 N -0.320 5.320
10 C 0.059 3.941
11 C -0.099 4.099
12 N -0.235 5.235
13 C -0.121 4.121
14 C 0.044 3.956
15 H 0.074 0.926
16 O -0.361 6.361
17 C -0.148 4.148
18 C -0.061 4.061
19 H 0.067 0.933
20 C 0.035 3.965
21 H 0.063 0.937
22 H 0.101 0.899
23 H 0.046 0.954
24 H 0.080 0.920
25 H 0.042 0.958
26 H 0.095 0.905
27 H 0.056 0.944
28 H 0.218 0.782
29 H 0.090 0.910
30 H 0.104 0.896
31 H 0.073 0.927
32 H 0.049 0.951
Dipole moment (debyes) X Y Z Total
from point charges 2.180 -11.070 4.595 12.182
hybrid contribution 0.693 0.811 1.293 1.677
sum 2.874 -10.258 5.888 12.172
Atomic orbital electron populations
1.70054 1.05193 1.25402 1.54207 1.25043 0.95324 0.98343 1.01069
0.86297 0.79062 0.83702 0.77714 1.21378 1.21579 1.20596 1.19224
0.92454 0.84792 1.41898 0.91641 1.44214 1.33453 1.01355 1.52995
1.20813 0.89112 0.95198 0.88970 1.22923 0.98677 0.90373 0.97934
1.64073 1.28034 1.02697 1.28723 1.23606 1.00074 0.93623 0.94776
1.22813 0.89724 0.89890 0.93216 0.92616 1.86592 1.54211 1.57936
1.37384 1.22248 0.98319 0.93779 1.00407 1.23100 0.89801 0.94380
0.98825 0.93323 1.20931 0.97595 0.85958 0.92053 0.93656 0.89891
0.95430 0.92002 0.95796 0.90506 0.94437 0.78242 0.90962 0.89589
0.92671 0.95122
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.77 11.15 55.49 0.62 -26.15 16
2 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16
3 Si 0.90 21.95 29.58 -169.99 -5.03 16.92 16
4 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16
5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
7 C -0.25 -7.15 9.60 -15.06 -0.14 -7.30 16
8 H 0.07 1.79 7.87 -52.48 -0.41 1.38 16
9 N -0.60 -15.66 3.06 -171.77 -0.53 -16.18 16
10 C 0.19 4.66 5.22 -3.43 -0.02 4.64 16
11 C 0.03 0.62 5.97 -4.02 -0.02 0.60 16
12 N -0.51 -9.77 4.84 -223.85 -1.08 -10.86 16
13 C 0.01 0.12 6.43 -2.55 -0.02 0.10 16
14 C 0.10 1.41 4.45 -24.58 -0.11 1.30 16
15 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16
16 O -0.56 -7.63 13.29 -35.23 -0.47 -8.10 16
17 C -0.11 -1.67 6.46 -25.42 -0.16 -1.84 16
18 C 0.05 0.92 2.71 -66.61 -0.18 0.74 16
19 H 0.05 0.95 7.96 -51.93 -0.41 0.54 16
20 C 0.16 3.59 6.16 -3.63 -0.02 3.56 16
21 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16
22 H 0.08 2.27 6.24 -51.93 -0.32 1.95 16
23 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16
24 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
25 H 0.02 0.49 7.97 -51.93 -0.41 0.08 16
26 H 0.08 1.05 8.09 -51.92 -0.42 0.63 16
27 H 0.04 0.53 8.13 -51.93 -0.42 0.11 16
28 H 0.37 3.29 9.12 45.56 0.42 3.71 16
29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16
30 H 0.09 1.41 7.84 -51.93 -0.41 1.00 16
31 H 0.05 1.17 7.95 -51.93 -0.41 0.75 16
32 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16
LS Contribution 255.35 15.07 3.85 3.85
Total: -1.00 -31.69 255.35 -7.46 -39.16
By element:
Atomic # 1 Polarization: 3.68 SS G_CDS: -4.06 Total: -0.38 kcal
Atomic # 6 Polarization: 2.50 SS G_CDS: -0.76 Total: 1.74 kcal
Atomic # 7 Polarization: -52.20 SS G_CDS: -0.99 Total: -53.19 kcal
Atomic # 8 Polarization: -7.63 SS G_CDS: -0.47 Total: -8.10 kcal
Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal
Total LS contribution 3.85 Total: 3.85 kcal
Total: -31.69 -7.46 -39.16 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000405361916.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.335 kcal
(2) G-P(sol) polarization free energy of solvation -31.694 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.359 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.159 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.824 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds