Wall clock time and date at job start Mon Mar 30 2020 02:59:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31623 * 1
3 3 Si 1.86797 * 120.00216 * 2 1
4 4 H 1.48500 * 109.47189 * 270.00210 * 3 2 1
5 5 H 1.48496 * 109.47295 * 30.00113 * 3 2 1
6 6 H 1.48500 * 109.47174 * 150.00193 * 3 2 1
7 7 C 1.38817 * 119.99552 * 180.02562 * 2 1 3
8 8 H 1.08005 * 119.99673 * 163.50296 * 7 2 1
9 9 N 1.36936 * 120.00174 * 343.50294 * 7 2 1
10 10 C 1.46857 * 120.22430 * 333.61024 * 9 7 2
11 11 C 1.53798 * 109.86300 * 226.88511 * 10 9 7
12 12 N 1.45771 * 107.77340 * 308.63320 * 11 10 9
13 13 C 1.47168 * 116.16039 * 183.19781 * 12 11 10
14 14 C 1.55139 * 103.58317 * 197.70286 * 13 12 11
15 15 H 1.09001 * 110.34445 * 142.97218 * 14 13 12
16 16 O 1.42909 * 110.34495 * 265.12765 * 14 13 12
17 17 C 1.54938 * 105.03588 * 24.04645 * 14 13 12
18 18 C 1.48788 * 109.50187 * 66.17075 * 12 11 10
19 19 H 1.09004 * 110.51521 * 49.44096 * 18 12 11
20 20 C 1.47680 * 120.22620 * 153.63201 * 9 7 2
21 21 H 0.97002 * 119.99234 * 359.97438 * 1 2 3
22 22 H 1.08996 * 109.40438 * 347.01060 * 10 9 7
23 23 H 1.09004 * 109.40470 * 106.76236 * 10 9 7
24 24 H 1.09006 * 109.80112 * 189.06562 * 11 10 9
25 25 H 1.09000 * 109.79877 * 68.20801 * 11 10 9
26 26 H 1.09008 * 110.59673 * 79.17995 * 13 12 11
27 27 H 1.09000 * 110.73545 * 316.29234 * 13 12 11
28 28 H 0.96699 * 114.00227 * 297.11646 * 16 14 13
29 29 H 1.09003 * 110.47687 * 121.02119 * 17 14 13
30 30 H 1.08999 * 110.47831 * 243.63568 * 17 14 13
31 31 H 1.09000 * 110.01592 * 10.70736 * 20 9 7
32 32 H 1.09007 * 110.01632 * 249.28141 * 20 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4978 2.0464 -1.4001
5 1 1.4478 2.6526 0.7000
6 1 3.5478 1.4401 0.7000
7 6 2.0102 -1.2022 -0.0005
8 1 3.0569 -1.2214 -0.2662
9 7 1.3678 -2.3639 0.3357
10 6 0.1955 -2.3311 1.2197
11 6 0.3320 -3.4085 2.3087
12 7 0.6305 -4.6733 1.6484
13 6 0.7276 -5.8540 2.5216
14 6 1.4815 -6.8916 1.6488
15 1 2.1623 -7.4806 2.2634
16 8 0.5523 -7.7465 0.9793
17 6 2.2765 -6.0494 0.6197
18 6 1.9718 -4.5956 1.0093
19 1 2.7102 -4.2160 1.7157
20 6 1.8493 -3.6581 -0.1878
21 1 -0.4849 0.8401 0.0004
22 1 0.1226 -1.3497 1.6882
23 1 -0.7047 -2.5195 0.6346
24 1 -0.6024 -3.4931 2.8636
25 1 1.1431 -3.1461 2.9880
26 1 -0.2652 -6.2210 2.7821
27 1 1.2981 -5.6228 3.4212
28 1 0.0102 -8.2815 1.5752
29 1 3.3441 -6.2525 0.7040
30 1 1.9272 -6.2546 -0.3923
31 1 2.8221 -3.5299 -0.6624
32 1 1.1334 -4.0602 -0.9048
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000405361916.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:59:55
Heat of formation + Delta-G solvation = -36.172037 kcal
Electronic energy + Delta-G solvation = -14851.553192 eV
Core-core repulsion = 12425.838634 eV
Total energy + Delta-G solvation = -2425.714557 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 212.127 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-40.79141 -37.84997 -36.01426 -33.31126 -33.23199 -29.82455 -28.97549 -26.58131
-24.12446 -23.07566 -21.76411 -20.79529 -18.75389 -17.98062 -16.79995 -16.76584
-16.26836 -15.82636 -15.49246 -14.86795 -14.65334 -14.15019 -14.06201 -13.33268
-13.19694 -12.89937 -12.62281 -12.52552 -12.31625 -12.09341 -12.02588 -11.75024
-11.58841 -11.34763 -10.83808 -10.55607 -9.35588 -8.72550 -7.89144 -5.35141
1.45764 1.46748 1.57182 2.49112 3.05814 3.25588 3.33853 3.59951
3.71892 3.88094 4.18299 4.27182 4.41970 4.43680 4.55644 4.61213
4.69086 4.81063 4.89079 4.92367 5.04058 5.11230 5.24829 5.37647
5.58620 5.65922 6.01126 6.31006 6.35546 7.01882 7.11403 7.81221
8.33998 9.17719
Molecular weight = 212.13amu
Principal moments of inertia in cm(-1)
A = 0.065103 B = 0.008227 C = 0.007804
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 429.981895 B = 3402.768895 C = 3587.149637
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.938 5.938
2 C -0.053 4.053
3 Si 0.973 3.027
4 H -0.284 1.284
5 H -0.291 1.291
6 H -0.269 1.269
7 C -0.270 4.270
8 H 0.070 0.930
9 N -0.615 5.615
10 C 0.193 3.807
11 C 0.047 3.953
12 N -0.532 5.532
13 C 0.008 3.992
14 C 0.111 3.889
15 H 0.094 0.906
16 O -0.576 6.576
17 C -0.106 4.106
18 C 0.056 3.944
19 H 0.045 0.955
20 C 0.158 3.842
21 H 0.251 0.749
22 H 0.053 0.947
23 H -0.009 1.009
24 H 0.080 0.920
25 H 0.025 0.975
26 H 0.090 0.910
27 H 0.052 0.948
28 H 0.393 0.607
29 H 0.101 0.899
30 H 0.071 0.929
31 H 0.061 0.939
32 H 0.012 0.988
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.723 -12.973 6.623 15.034
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.584 5.584
2 C -0.248 4.248
3 Si 0.800 3.200
4 H -0.210 1.210
5 H -0.217 1.217
6 H -0.194 1.194
7 C -0.400 4.400
8 H 0.087 0.913
9 N -0.339 5.339
10 C 0.067 3.933
11 C -0.082 4.082
12 N -0.258 5.258
13 C -0.120 4.120
14 C 0.052 3.948
15 H 0.112 0.888
16 O -0.384 6.384
17 C -0.145 4.145
18 C -0.054 4.054
19 H 0.063 0.937
20 C 0.032 3.968
21 H 0.060 0.940
22 H 0.071 0.929
23 H 0.009 0.991
24 H 0.098 0.902
25 H 0.043 0.957
26 H 0.109 0.891
27 H 0.071 0.929
28 H 0.243 0.757
29 H 0.119 0.881
30 H 0.089 0.911
31 H 0.079 0.921
32 H 0.030 0.970
Dipole moment (debyes) X Y Z Total
from point charges 3.450 -12.624 5.756 14.297
hybrid contribution 0.263 1.218 0.885 1.528
sum 3.713 -11.407 6.640 13.711
Atomic orbital electron populations
1.70229 1.06780 1.25923 1.55450 1.25880 0.96138 1.01715 1.01101
0.85201 0.77986 0.79131 0.77660 1.21016 1.21699 1.19399 1.19606
0.92884 0.85938 1.41573 0.91265 1.44513 1.33509 1.02298 1.53610
1.20548 0.87620 0.95558 0.89540 1.22565 0.99718 0.89964 0.95993
1.63990 1.28364 1.03144 1.30274 1.23753 1.01585 0.91810 0.94838
1.22798 0.89870 0.89760 0.92384 0.88816 1.86544 1.54798 1.58247
1.38822 1.22251 1.00541 0.91493 1.00195 1.22920 0.89787 0.95814
0.96859 0.93659 1.21043 0.96998 0.85225 0.93515 0.94038 0.92863
0.99073 0.90173 0.95669 0.89133 0.92937 0.75732 0.88062 0.91072
0.92096 0.97047
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -57.38 11.15 21.65 0.24 -57.13 16
2 C -0.05 -3.07 4.91 84.86 0.42 -2.65 16
3 Si 0.97 45.73 29.58 68.60 2.03 47.76 16
4 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16
5 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16
6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16
7 C -0.27 -15.47 9.60 84.03 0.81 -14.66 16
8 H 0.07 3.82 7.87 -2.91 -0.02 3.80 16
9 N -0.62 -33.06 3.06 -697.37 -2.14 -35.20 16
10 C 0.19 10.07 5.22 86.58 0.45 10.52 16
11 C 0.05 1.92 5.97 86.79 0.52 2.44 16
12 N -0.53 -19.61 4.84 -862.11 -4.17 -23.78 16
13 C 0.01 0.21 6.43 86.99 0.56 0.77 16
14 C 0.11 2.58 4.45 31.99 0.14 2.72 16
15 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16
16 O -0.58 -13.80 13.29 -148.98 -1.98 -15.78 16
17 C -0.11 -2.97 6.46 31.44 0.20 -2.77 16
18 C 0.06 2.02 2.71 44.59 0.12 2.14 16
19 H 0.05 1.69 7.96 -2.39 -0.02 1.67 16
20 C 0.16 7.10 6.16 86.00 0.53 7.63 16
21 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16
22 H 0.05 3.04 6.24 -2.39 -0.01 3.03 16
23 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16
24 H 0.08 2.91 8.14 -2.38 -0.02 2.89 16
25 H 0.03 1.01 7.97 -2.39 -0.02 0.99 16
26 H 0.09 2.14 8.09 -2.38 -0.02 2.13 16
27 H 0.05 1.26 8.13 -2.39 -0.02 1.25 16
28 H 0.39 5.47 9.12 -74.06 -0.68 4.79 16
29 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16
30 H 0.07 2.22 7.84 -2.39 -0.02 2.20 16
31 H 0.06 2.60 7.95 -2.39 -0.02 2.58 16
32 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16
Total: -1.00 -69.71 255.35 -1.84 -71.56
By element:
Atomic # 1 Polarization: 6.01 SS G_CDS: 0.43 Total: 6.43 kcal
Atomic # 6 Polarization: 2.40 SS G_CDS: 3.75 Total: 6.15 kcal
Atomic # 7 Polarization: -110.05 SS G_CDS: -6.07 Total: -116.12 kcal
Atomic # 8 Polarization: -13.80 SS G_CDS: -1.98 Total: -15.78 kcal
Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal
Total: -69.71 -1.84 -71.56 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000405361916.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.386 kcal
(2) G-P(sol) polarization free energy of solvation -69.715 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.329 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.843 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.558 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.172 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds