Wall clock time and date at job start Mon Mar 30 2020 02:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00216 * 2 1 4 4 H 1.48500 * 109.47189 * 270.00210 * 3 2 1 5 5 H 1.48496 * 109.47295 * 30.00113 * 3 2 1 6 6 H 1.48500 * 109.47174 * 150.00193 * 3 2 1 7 7 C 1.38817 * 119.99552 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99673 * 163.50296 * 7 2 1 9 9 N 1.36936 * 120.00174 * 343.50294 * 7 2 1 10 10 C 1.46857 * 120.22430 * 333.61024 * 9 7 2 11 11 C 1.53798 * 109.86300 * 226.88511 * 10 9 7 12 12 N 1.45771 * 107.77340 * 308.63320 * 11 10 9 13 13 C 1.47168 * 116.16039 * 183.19781 * 12 11 10 14 14 C 1.55139 * 103.58317 * 197.70286 * 13 12 11 15 15 H 1.09001 * 110.34445 * 142.97218 * 14 13 12 16 16 O 1.42909 * 110.34495 * 265.12765 * 14 13 12 17 17 C 1.54938 * 105.03588 * 24.04645 * 14 13 12 18 18 C 1.48788 * 109.50187 * 66.17075 * 12 11 10 19 19 H 1.09004 * 110.51521 * 49.44096 * 18 12 11 20 20 C 1.47680 * 120.22620 * 153.63201 * 9 7 2 21 21 H 0.97002 * 119.99234 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.40438 * 347.01060 * 10 9 7 23 23 H 1.09004 * 109.40470 * 106.76236 * 10 9 7 24 24 H 1.09006 * 109.80112 * 189.06562 * 11 10 9 25 25 H 1.09000 * 109.79877 * 68.20801 * 11 10 9 26 26 H 1.09008 * 110.59673 * 79.17995 * 13 12 11 27 27 H 1.09000 * 110.73545 * 316.29234 * 13 12 11 28 28 H 0.96699 * 114.00227 * 297.11646 * 16 14 13 29 29 H 1.09003 * 110.47687 * 121.02119 * 17 14 13 30 30 H 1.08999 * 110.47831 * 243.63568 * 17 14 13 31 31 H 1.09000 * 110.01592 * 10.70736 * 20 9 7 32 32 H 1.09007 * 110.01632 * 249.28141 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0569 -1.2214 -0.2662 9 7 1.3678 -2.3639 0.3357 10 6 0.1955 -2.3311 1.2197 11 6 0.3320 -3.4085 2.3087 12 7 0.6305 -4.6733 1.6484 13 6 0.7276 -5.8540 2.5216 14 6 1.4815 -6.8916 1.6488 15 1 2.1623 -7.4806 2.2634 16 8 0.5523 -7.7465 0.9793 17 6 2.2765 -6.0494 0.6197 18 6 1.9718 -4.5956 1.0093 19 1 2.7102 -4.2160 1.7157 20 6 1.8493 -3.6581 -0.1878 21 1 -0.4849 0.8401 0.0004 22 1 0.1226 -1.3497 1.6882 23 1 -0.7047 -2.5195 0.6346 24 1 -0.6024 -3.4931 2.8636 25 1 1.1431 -3.1461 2.9880 26 1 -0.2652 -6.2210 2.7821 27 1 1.2981 -5.6228 3.4212 28 1 0.0102 -8.2815 1.5752 29 1 3.3441 -6.2525 0.7040 30 1 1.9272 -6.2546 -0.3923 31 1 2.8221 -3.5299 -0.6624 32 1 1.1334 -4.0602 -0.9048 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405361916.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:55 Heat of formation + Delta-G solvation = -36.172037 kcal Electronic energy + Delta-G solvation = -14851.553192 eV Core-core repulsion = 12425.838634 eV Total energy + Delta-G solvation = -2425.714557 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.79141 -37.84997 -36.01426 -33.31126 -33.23199 -29.82455 -28.97549 -26.58131 -24.12446 -23.07566 -21.76411 -20.79529 -18.75389 -17.98062 -16.79995 -16.76584 -16.26836 -15.82636 -15.49246 -14.86795 -14.65334 -14.15019 -14.06201 -13.33268 -13.19694 -12.89937 -12.62281 -12.52552 -12.31625 -12.09341 -12.02588 -11.75024 -11.58841 -11.34763 -10.83808 -10.55607 -9.35588 -8.72550 -7.89144 -5.35141 1.45764 1.46748 1.57182 2.49112 3.05814 3.25588 3.33853 3.59951 3.71892 3.88094 4.18299 4.27182 4.41970 4.43680 4.55644 4.61213 4.69086 4.81063 4.89079 4.92367 5.04058 5.11230 5.24829 5.37647 5.58620 5.65922 6.01126 6.31006 6.35546 7.01882 7.11403 7.81221 8.33998 9.17719 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.065103 B = 0.008227 C = 0.007804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.981895 B = 3402.768895 C = 3587.149637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.053 4.053 3 Si 0.973 3.027 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.270 4.270 8 H 0.070 0.930 9 N -0.615 5.615 10 C 0.193 3.807 11 C 0.047 3.953 12 N -0.532 5.532 13 C 0.008 3.992 14 C 0.111 3.889 15 H 0.094 0.906 16 O -0.576 6.576 17 C -0.106 4.106 18 C 0.056 3.944 19 H 0.045 0.955 20 C 0.158 3.842 21 H 0.251 0.749 22 H 0.053 0.947 23 H -0.009 1.009 24 H 0.080 0.920 25 H 0.025 0.975 26 H 0.090 0.910 27 H 0.052 0.948 28 H 0.393 0.607 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.723 -12.973 6.623 15.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.248 4.248 3 Si 0.800 3.200 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.194 1.194 7 C -0.400 4.400 8 H 0.087 0.913 9 N -0.339 5.339 10 C 0.067 3.933 11 C -0.082 4.082 12 N -0.258 5.258 13 C -0.120 4.120 14 C 0.052 3.948 15 H 0.112 0.888 16 O -0.384 6.384 17 C -0.145 4.145 18 C -0.054 4.054 19 H 0.063 0.937 20 C 0.032 3.968 21 H 0.060 0.940 22 H 0.071 0.929 23 H 0.009 0.991 24 H 0.098 0.902 25 H 0.043 0.957 26 H 0.109 0.891 27 H 0.071 0.929 28 H 0.243 0.757 29 H 0.119 0.881 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 3.450 -12.624 5.756 14.297 hybrid contribution 0.263 1.218 0.885 1.528 sum 3.713 -11.407 6.640 13.711 Atomic orbital electron populations 1.70229 1.06780 1.25923 1.55450 1.25880 0.96138 1.01715 1.01101 0.85201 0.77986 0.79131 0.77660 1.21016 1.21699 1.19399 1.19606 0.92884 0.85938 1.41573 0.91265 1.44513 1.33509 1.02298 1.53610 1.20548 0.87620 0.95558 0.89540 1.22565 0.99718 0.89964 0.95993 1.63990 1.28364 1.03144 1.30274 1.23753 1.01585 0.91810 0.94838 1.22798 0.89870 0.89760 0.92384 0.88816 1.86544 1.54798 1.58247 1.38822 1.22251 1.00541 0.91493 1.00195 1.22920 0.89787 0.95814 0.96859 0.93659 1.21043 0.96998 0.85225 0.93515 0.94038 0.92863 0.99073 0.90173 0.95669 0.89133 0.92937 0.75732 0.88062 0.91072 0.92096 0.97047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.38 11.15 21.65 0.24 -57.13 16 2 C -0.05 -3.07 4.91 84.86 0.42 -2.65 16 3 Si 0.97 45.73 29.58 68.60 2.03 47.76 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.27 -15.47 9.60 84.03 0.81 -14.66 16 8 H 0.07 3.82 7.87 -2.91 -0.02 3.80 16 9 N -0.62 -33.06 3.06 -697.37 -2.14 -35.20 16 10 C 0.19 10.07 5.22 86.58 0.45 10.52 16 11 C 0.05 1.92 5.97 86.79 0.52 2.44 16 12 N -0.53 -19.61 4.84 -862.11 -4.17 -23.78 16 13 C 0.01 0.21 6.43 86.99 0.56 0.77 16 14 C 0.11 2.58 4.45 31.99 0.14 2.72 16 15 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 16 O -0.58 -13.80 13.29 -148.98 -1.98 -15.78 16 17 C -0.11 -2.97 6.46 31.44 0.20 -2.77 16 18 C 0.06 2.02 2.71 44.59 0.12 2.14 16 19 H 0.05 1.69 7.96 -2.39 -0.02 1.67 16 20 C 0.16 7.10 6.16 86.00 0.53 7.63 16 21 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 22 H 0.05 3.04 6.24 -2.39 -0.01 3.03 16 23 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 24 H 0.08 2.91 8.14 -2.38 -0.02 2.89 16 25 H 0.03 1.01 7.97 -2.39 -0.02 0.99 16 26 H 0.09 2.14 8.09 -2.38 -0.02 2.13 16 27 H 0.05 1.26 8.13 -2.39 -0.02 1.25 16 28 H 0.39 5.47 9.12 -74.06 -0.68 4.79 16 29 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.07 2.22 7.84 -2.39 -0.02 2.20 16 31 H 0.06 2.60 7.95 -2.39 -0.02 2.58 16 32 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 Total: -1.00 -69.71 255.35 -1.84 -71.56 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: 0.43 Total: 6.43 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 3.75 Total: 6.15 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -6.07 Total: -116.12 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -1.98 Total: -15.78 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -69.71 -1.84 -71.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405361916.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.386 kcal (2) G-P(sol) polarization free energy of solvation -69.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds