Wall clock time and date at job start Mon Mar 30 2020 02:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00053 * 2 1 4 4 H 1.48499 * 109.47116 * 274.62272 * 3 2 1 5 5 H 1.48504 * 109.47059 * 34.62212 * 3 2 1 6 6 H 1.48498 * 109.46955 * 154.61877 * 3 2 1 7 7 C 1.38817 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99682 * 196.79605 * 7 2 1 9 9 N 1.36931 * 120.00258 * 16.79468 * 7 2 1 10 10 C 1.46856 * 120.22062 * 26.19465 * 9 7 2 11 11 C 1.53812 * 109.86334 * 133.11185 * 10 9 7 12 12 N 1.45779 * 107.76614 * 51.36396 * 11 10 9 13 13 C 1.47155 * 116.16422 * 176.78938 * 12 11 10 14 14 C 1.55146 * 103.58421 * 162.31490 * 13 12 11 15 15 H 1.08999 * 110.34680 * 217.13870 * 14 13 12 16 16 O 1.42894 * 110.35083 * 94.97237 * 14 13 12 17 17 C 1.54946 * 104.93937 * 335.99959 * 14 13 12 18 18 C 1.48792 * 109.51023 * 293.82772 * 12 11 10 19 19 H 1.09006 * 110.51620 * 309.74055 * 18 12 11 20 20 C 1.47679 * 120.22719 * 206.16991 * 9 7 2 21 21 H 0.96996 * 119.99853 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.40601 * 12.99194 * 10 9 7 23 23 H 1.09004 * 109.40635 * 253.23354 * 10 9 7 24 24 H 1.08996 * 109.79787 * 291.80042 * 11 10 9 25 25 H 1.08998 * 109.79946 * 170.92957 * 11 10 9 26 26 H 1.09007 * 110.59824 * 280.83397 * 13 12 11 27 27 H 1.08994 * 110.60817 * 43.78396 * 13 12 11 28 28 H 0.96707 * 113.99792 * 61.45612 * 16 14 13 29 29 H 1.08996 * 110.47887 * 238.92844 * 17 14 13 30 30 H 1.09000 * 110.47278 * 116.31559 * 17 14 13 31 31 H 1.09008 * 110.01286 * 110.72061 * 20 9 7 32 32 H 1.09004 * 110.01099 * 349.29766 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4000 2.1029 -1.3955 5 1 1.4999 2.6225 0.7955 6 1 3.5931 1.4139 0.6001 7 6 2.0102 -1.2022 0.0005 8 1 3.0557 -1.2220 0.2708 9 7 1.3694 -2.3629 -0.3416 10 6 0.1986 -2.3275 -1.2273 11 6 0.3379 -3.4002 -2.3208 12 7 0.6365 -4.6675 -1.6653 13 6 0.7359 -5.8445 -2.5430 14 6 1.4890 -6.8852 -1.6731 15 1 2.1726 -7.4699 -2.2886 16 8 0.5595 -7.7448 -1.0105 17 6 2.2799 -6.0444 -0.6395 18 6 1.9768 -4.5914 -1.0236 19 1 2.7188 -4.2218 -1.7315 20 6 1.8513 -3.6589 0.1772 21 1 -0.4850 0.8400 -0.0004 22 1 0.1255 -1.3441 -1.6919 23 1 -0.7024 -2.5192 -0.6445 24 1 1.1498 -3.1342 -2.9976 25 1 -0.5956 -3.4833 -2.8775 26 1 -0.2563 -6.2111 -2.8066 27 1 1.3088 -5.6073 -3.4393 28 1 0.0050 -8.2618 -1.6109 29 1 3.3480 -6.2456 -0.7214 30 1 1.9281 -6.2530 0.3709 31 1 1.1346 -4.0647 0.8913 32 1 2.8233 -3.5317 0.6539 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405361918.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:57 Heat of formation + Delta-G solvation = -10.909014 kcal Electronic energy + Delta-G solvation = -14851.438345 eV Core-core repulsion = 12426.819274 eV Total energy + Delta-G solvation = -2424.619070 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.39755 -36.45336 -34.36799 -31.74146 -31.31236 -28.23734 -27.40263 -24.73321 -22.39075 -21.45009 -20.49257 -19.15824 -17.06650 -16.55418 -15.39872 -14.95162 -14.75878 -14.31314 -13.67428 -13.18247 -12.84861 -12.70392 -12.60799 -11.94670 -11.54355 -11.29453 -11.01332 -10.79350 -10.60319 -10.38067 -10.27418 -10.11779 -9.74420 -9.70330 -9.54641 -8.46029 -7.87279 -6.64797 -5.74730 -3.16172 3.39318 3.46107 3.47889 4.33593 4.43312 4.55528 4.83408 5.01886 5.29606 5.41559 5.48553 5.62913 5.74183 5.89163 5.93622 6.01940 6.15869 6.21855 6.32268 6.44787 6.55302 6.70957 6.96621 7.28246 7.50293 7.71900 7.74773 7.79901 7.87793 8.45848 9.25163 9.87870 10.44659 11.33856 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.065096 B = 0.008228 C = 0.007807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.033045 B = 3402.035128 C = 3585.771922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.067 0.933 9 N -0.597 5.597 10 C 0.185 3.815 11 C 0.030 3.970 12 N -0.511 5.511 13 C 0.008 3.992 14 C 0.103 3.897 15 H 0.056 0.944 16 O -0.557 6.557 17 C -0.110 4.110 18 C 0.049 3.951 19 H 0.048 0.952 20 C 0.162 3.838 21 H 0.253 0.747 22 H 0.083 0.917 23 H 0.028 0.972 24 H 0.024 0.976 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.371 0.629 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.031 0.969 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.461 -11.441 -5.483 12.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.733 3.267 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.320 5.320 10 C 0.059 3.941 11 C -0.099 4.099 12 N -0.236 5.236 13 C -0.121 4.121 14 C 0.044 3.956 15 H 0.074 0.926 16 O -0.361 6.361 17 C -0.149 4.149 18 C -0.060 4.060 19 H 0.066 0.934 20 C 0.035 3.965 21 H 0.063 0.937 22 H 0.101 0.899 23 H 0.046 0.954 24 H 0.042 0.958 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.056 0.944 28 H 0.218 0.782 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.049 0.951 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.194 -11.061 -4.586 12.174 hybrid contribution 0.689 0.823 -1.321 1.702 sum 2.883 -10.238 -5.908 12.167 Atomic orbital electron populations 1.70054 1.05183 1.25385 1.54219 1.25040 0.95328 0.98347 1.01074 0.86258 0.79133 0.83789 0.77513 1.21583 1.21756 1.20418 1.19262 0.92590 0.84828 1.41670 0.91556 1.44219 1.33575 1.01294 1.52928 1.20820 0.89130 0.95270 0.88892 1.22923 0.98677 0.90311 0.97990 1.64070 1.28113 1.02784 1.28602 1.23615 1.00054 0.93658 0.94782 1.22810 0.89749 0.89791 0.93283 0.92613 1.86584 1.53423 1.58733 1.37397 1.22226 0.98358 0.93867 1.00402 1.23059 0.89782 0.94425 0.98769 0.93379 1.20920 0.97603 0.85939 0.91997 0.93661 0.89882 0.95423 0.95794 0.91999 0.90486 0.94426 0.78210 0.90978 0.89609 0.95075 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.75 11.15 55.49 0.62 -26.13 16 2 C 0.00 0.01 4.91 -17.43 -0.09 -0.07 16 3 Si 0.90 21.97 29.59 -169.99 -5.03 16.94 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.25 -7.14 9.60 -15.06 -0.14 -7.28 16 8 H 0.07 1.82 7.87 -52.49 -0.41 1.41 16 9 N -0.60 -15.63 3.06 -171.76 -0.53 -16.16 16 10 C 0.18 4.65 5.23 -3.43 -0.02 4.63 16 11 C 0.03 0.63 5.97 -4.01 -0.02 0.60 16 12 N -0.51 -9.76 4.84 -223.98 -1.08 -10.85 16 13 C 0.01 0.12 6.42 -2.55 -0.02 0.10 16 14 C 0.10 1.41 4.45 -24.57 -0.11 1.30 16 15 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 16 O -0.56 -7.63 13.30 -35.23 -0.47 -8.10 16 17 C -0.11 -1.69 6.44 -25.54 -0.16 -1.85 16 18 C 0.05 0.93 2.70 -66.73 -0.18 0.75 16 19 H 0.05 0.94 7.98 -51.93 -0.41 0.52 16 20 C 0.16 3.60 6.16 -3.63 -0.02 3.57 16 21 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 22 H 0.08 2.27 6.23 -51.93 -0.32 1.95 16 23 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.02 0.49 7.98 -51.93 -0.41 0.08 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.08 1.05 8.09 -51.92 -0.42 0.63 16 27 H 0.04 0.53 8.13 -51.93 -0.42 0.11 16 28 H 0.37 3.31 9.10 45.56 0.41 3.72 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.09 1.41 7.84 -51.93 -0.41 1.00 16 31 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.05 1.17 7.95 -51.93 -0.41 0.76 16 LS Contribution 255.33 15.07 3.85 3.85 Total: -1.00 -31.64 255.33 -7.47 -39.11 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -4.06 Total: -0.40 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -0.76 Total: 1.74 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -0.99 Total: -53.14 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.47 Total: -8.10 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.64 -7.47 -39.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405361918.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.198 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds