Wall clock time and date at job start Mon Mar 30 2020 02:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00053 * 2 1 4 4 H 1.48499 * 109.47116 * 274.62272 * 3 2 1 5 5 H 1.48504 * 109.47059 * 34.62212 * 3 2 1 6 6 H 1.48498 * 109.46955 * 154.61877 * 3 2 1 7 7 C 1.38817 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99682 * 196.79605 * 7 2 1 9 9 N 1.36931 * 120.00258 * 16.79468 * 7 2 1 10 10 C 1.46856 * 120.22062 * 26.19465 * 9 7 2 11 11 C 1.53812 * 109.86334 * 133.11185 * 10 9 7 12 12 N 1.45779 * 107.76614 * 51.36396 * 11 10 9 13 13 C 1.47155 * 116.16422 * 176.78938 * 12 11 10 14 14 C 1.55146 * 103.58421 * 162.31490 * 13 12 11 15 15 H 1.08999 * 110.34680 * 217.13870 * 14 13 12 16 16 O 1.42894 * 110.35083 * 94.97237 * 14 13 12 17 17 C 1.54946 * 104.93937 * 335.99959 * 14 13 12 18 18 C 1.48792 * 109.51023 * 293.82772 * 12 11 10 19 19 H 1.09006 * 110.51620 * 309.74055 * 18 12 11 20 20 C 1.47679 * 120.22719 * 206.16991 * 9 7 2 21 21 H 0.96996 * 119.99853 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.40601 * 12.99194 * 10 9 7 23 23 H 1.09004 * 109.40635 * 253.23354 * 10 9 7 24 24 H 1.08996 * 109.79787 * 291.80042 * 11 10 9 25 25 H 1.08998 * 109.79946 * 170.92957 * 11 10 9 26 26 H 1.09007 * 110.59824 * 280.83397 * 13 12 11 27 27 H 1.08994 * 110.60817 * 43.78396 * 13 12 11 28 28 H 0.96707 * 113.99792 * 61.45612 * 16 14 13 29 29 H 1.08996 * 110.47887 * 238.92844 * 17 14 13 30 30 H 1.09000 * 110.47278 * 116.31559 * 17 14 13 31 31 H 1.09008 * 110.01286 * 110.72061 * 20 9 7 32 32 H 1.09004 * 110.01099 * 349.29766 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4000 2.1029 -1.3955 5 1 1.4999 2.6225 0.7955 6 1 3.5931 1.4139 0.6001 7 6 2.0102 -1.2022 0.0005 8 1 3.0557 -1.2220 0.2708 9 7 1.3694 -2.3629 -0.3416 10 6 0.1986 -2.3275 -1.2273 11 6 0.3379 -3.4002 -2.3208 12 7 0.6365 -4.6675 -1.6653 13 6 0.7359 -5.8445 -2.5430 14 6 1.4890 -6.8852 -1.6731 15 1 2.1726 -7.4699 -2.2886 16 8 0.5595 -7.7448 -1.0105 17 6 2.2799 -6.0444 -0.6395 18 6 1.9768 -4.5914 -1.0236 19 1 2.7188 -4.2218 -1.7315 20 6 1.8513 -3.6589 0.1772 21 1 -0.4850 0.8400 -0.0004 22 1 0.1255 -1.3441 -1.6919 23 1 -0.7024 -2.5192 -0.6445 24 1 1.1498 -3.1342 -2.9976 25 1 -0.5956 -3.4833 -2.8775 26 1 -0.2563 -6.2111 -2.8066 27 1 1.3088 -5.6073 -3.4393 28 1 0.0050 -8.2618 -1.6109 29 1 3.3480 -6.2456 -0.7214 30 1 1.9281 -6.2530 0.3709 31 1 1.1346 -4.0647 0.8913 32 1 2.8233 -3.5317 0.6539 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405361918.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:57 Heat of formation + Delta-G solvation = -36.197171 kcal Electronic energy + Delta-G solvation = -14852.534921 eV Core-core repulsion = 12426.819274 eV Total energy + Delta-G solvation = -2425.715647 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.80388 -37.85138 -36.01906 -33.31570 -33.23913 -29.82493 -28.97507 -26.58471 -24.12781 -23.07770 -21.76948 -20.79583 -18.75172 -17.96626 -16.80602 -16.77052 -16.28508 -15.83100 -15.49102 -14.86874 -14.65714 -14.15174 -14.06846 -13.33402 -13.20127 -12.91734 -12.63675 -12.52011 -12.28702 -12.08052 -12.03240 -11.74879 -11.59043 -11.34708 -10.84137 -10.55877 -9.35778 -8.73360 -7.89099 -5.35102 1.45930 1.46712 1.56958 2.48941 3.05628 3.25055 3.33312 3.60009 3.71790 3.88404 4.18424 4.27317 4.41954 4.43507 4.54868 4.61068 4.69092 4.81281 4.89068 4.92075 5.04130 5.11144 5.24803 5.37422 5.58726 5.65893 6.00996 6.30764 6.35321 7.01457 7.11298 7.81098 8.33788 9.17715 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.065096 B = 0.008228 C = 0.007807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.033045 B = 3402.035128 C = 3585.771922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.053 4.053 3 Si 0.973 3.027 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.266 1.266 7 C -0.269 4.269 8 H 0.070 0.930 9 N -0.615 5.615 10 C 0.193 3.807 11 C 0.047 3.953 12 N -0.533 5.533 13 C 0.008 3.992 14 C 0.111 3.889 15 H 0.094 0.906 16 O -0.576 6.576 17 C -0.107 4.107 18 C 0.056 3.944 19 H 0.046 0.954 20 C 0.158 3.842 21 H 0.250 0.750 22 H 0.053 0.947 23 H -0.009 1.009 24 H 0.025 0.975 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.052 0.948 28 H 0.393 0.607 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.012 0.988 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.735 -12.947 -6.630 15.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.248 4.248 3 Si 0.800 3.200 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.191 1.191 7 C -0.399 4.399 8 H 0.088 0.912 9 N -0.339 5.339 10 C 0.067 3.933 11 C -0.082 4.082 12 N -0.258 5.258 13 C -0.120 4.120 14 C 0.052 3.948 15 H 0.111 0.889 16 O -0.384 6.384 17 C -0.146 4.146 18 C -0.054 4.054 19 H 0.064 0.936 20 C 0.033 3.967 21 H 0.060 0.940 22 H 0.071 0.929 23 H 0.010 0.990 24 H 0.043 0.957 25 H 0.098 0.902 26 H 0.109 0.891 27 H 0.071 0.929 28 H 0.243 0.757 29 H 0.119 0.881 30 H 0.089 0.911 31 H 0.030 0.970 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.475 -12.618 -5.747 14.294 hybrid contribution 0.254 1.232 -0.916 1.556 sum 3.729 -11.386 -6.663 13.709 Atomic orbital electron populations 1.70228 1.06770 1.25900 1.55481 1.25872 0.96135 1.01700 1.01129 0.85170 0.78161 0.79188 0.77434 1.21127 1.22080 1.19095 1.19629 0.92983 0.85965 1.41328 0.91221 1.44517 1.33630 1.02243 1.53534 1.20554 0.87649 0.95591 0.89492 1.22564 0.99710 0.89928 0.96028 1.63987 1.28445 1.03203 1.30159 1.23761 1.01576 0.91857 0.94806 1.22794 0.89906 0.89653 0.92444 0.88857 1.86538 1.54032 1.58997 1.38844 1.22227 1.00559 0.91607 1.00199 1.22872 0.89787 0.95855 0.96836 0.93643 1.21030 0.97010 0.85172 0.93482 0.94045 0.92877 0.99045 0.95683 0.90170 0.89076 0.92946 0.75718 0.88104 0.91099 0.96977 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.35 11.15 21.65 0.24 -57.11 16 2 C -0.05 -3.06 4.91 84.86 0.42 -2.64 16 3 Si 0.97 45.75 29.59 68.60 2.03 47.78 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.27 -15.39 9.60 84.04 0.81 -14.58 16 8 H 0.07 3.84 7.87 -2.91 -0.02 3.82 16 9 N -0.62 -33.00 3.06 -697.33 -2.14 -35.14 16 10 C 0.19 10.05 5.23 86.59 0.45 10.50 16 11 C 0.05 1.92 5.97 86.79 0.52 2.44 16 12 N -0.53 -19.57 4.84 -862.55 -4.17 -23.74 16 13 C 0.01 0.21 6.42 86.99 0.56 0.77 16 14 C 0.11 2.59 4.45 32.00 0.14 2.73 16 15 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 16 O -0.58 -13.80 13.30 -148.98 -1.98 -15.79 16 17 C -0.11 -3.00 6.44 31.37 0.20 -2.80 16 18 C 0.06 2.03 2.70 44.51 0.12 2.15 16 19 H 0.05 1.68 7.98 -2.38 -0.02 1.66 16 20 C 0.16 7.12 6.16 86.00 0.53 7.65 16 21 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 22 H 0.05 3.03 6.23 -2.39 -0.01 3.02 16 23 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 24 H 0.02 1.01 7.98 -2.39 -0.02 0.99 16 25 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 26 H 0.09 2.14 8.09 -2.38 -0.02 2.13 16 27 H 0.05 1.26 8.13 -2.39 -0.02 1.24 16 28 H 0.39 5.50 9.10 -74.05 -0.67 4.82 16 29 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.07 2.21 7.84 -2.39 -0.02 2.19 16 31 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.06 2.59 7.95 -2.38 -0.02 2.58 16 Total: -1.00 -69.56 255.33 -1.85 -71.41 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 0.43 Total: 6.39 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 3.75 Total: 6.21 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -6.07 Total: -115.99 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -1.98 Total: -15.79 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -69.56 -1.85 -71.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405361918.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.208 kcal (2) G-P(sol) polarization free energy of solvation -69.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds