Wall clock time and date at job start Mon Mar 30 2020 02:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86802 * 119.99898 * 2 1 4 4 H 1.48497 * 109.47151 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46684 * 299.99409 * 3 2 1 6 6 H 1.48493 * 109.47217 * 59.99251 * 3 2 1 7 7 C 1.38955 * 120.00190 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99945 * 179.97438 * 7 2 1 9 9 N 1.37094 * 119.99745 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99701 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00255 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00048 * 179.97438 * 10 9 7 13 13 C 1.52997 * 109.47415 * 179.97438 * 12 10 9 14 14 H 1.08999 * 110.43299 * 303.91936 * 13 12 10 15 15 C 1.54897 * 110.48397 * 66.45562 * 13 12 10 16 16 C 1.54882 * 102.74839 * 156.62024 * 15 13 12 17 17 C 1.54268 * 104.19992 * 322.05790 * 16 15 13 18 18 C 1.53876 * 106.59607 * 23.60931 * 17 16 15 19 19 H 1.09002 * 110.03703 * 119.28069 * 18 17 16 20 20 N 1.46901 * 110.07505 * 240.69223 * 18 17 16 21 21 H 0.96997 * 120.00210 * 0.02562 * 1 2 3 22 22 H 0.96999 * 120.00428 * 359.97438 * 9 7 2 23 23 H 1.09010 * 109.47094 * 59.99906 * 12 10 9 24 24 H 1.08998 * 109.47531 * 300.00612 * 12 10 9 25 25 H 1.08994 * 110.75328 * 274.93857 * 15 13 12 26 26 H 1.09004 * 110.75215 * 38.30565 * 15 13 12 27 27 H 1.09003 * 110.48391 * 80.73538 * 16 15 13 28 28 H 1.09004 * 110.48801 * 203.38079 * 16 15 13 29 29 H 1.08994 * 110.03288 * 264.32894 * 17 16 15 30 30 H 1.09000 * 110.07311 * 142.91218 * 17 16 15 31 31 H 1.00899 * 111.00134 * 297.19664 * 20 18 17 32 32 H 1.00903 * 110.99619 * 61.14586 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3963 -1.2126 6 1 1.8893 2.3965 1.2123 7 6 2.0090 -1.2034 0.0005 8 1 3.0890 -1.2033 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2440 -4.8630 0.0011 13 6 2.2382 -6.0259 0.0004 14 1 2.9181 -5.9447 -0.8478 15 6 3.0320 -6.0612 1.3300 16 6 3.4861 -7.5394 1.4177 17 6 2.2844 -8.3375 0.8711 18 6 1.4909 -7.3751 -0.0300 19 1 1.4572 -7.7602 -1.0492 20 7 0.1272 -7.2069 0.4894 21 1 -0.4850 0.8400 -0.0004 22 1 0.3535 -2.3907 0.0005 23 1 0.6169 -4.9209 -0.8887 24 1 0.6176 -4.9205 0.8913 25 1 3.8932 -5.3946 1.2835 26 1 2.3882 -5.8042 2.1712 27 1 4.3676 -7.7051 0.7983 28 1 3.6884 -7.8155 2.4526 29 1 1.6578 -8.6798 1.6947 30 1 2.6349 -9.1901 0.2895 31 1 -0.3753 -8.0817 0.4761 32 1 0.1400 -6.8114 1.4176 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405574194.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:44 Heat of formation + Delta-G solvation = -58.631593 kcal Electronic energy + Delta-G solvation = -14273.176962 eV Core-core repulsion = 11846.488485 eV Total energy + Delta-G solvation = -2426.688477 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.11357 -37.44237 -33.86341 -32.18897 -31.25748 -30.71184 -26.61985 -25.80298 -23.89687 -20.48203 -19.51220 -18.54132 -17.70958 -16.79630 -15.35171 -14.95770 -14.37592 -14.24314 -14.03025 -13.71878 -13.43627 -12.96871 -12.14767 -12.04734 -11.54040 -11.37989 -11.03335 -10.79382 -10.63953 -10.50979 -10.32129 -10.26441 -10.11842 -10.02665 -9.42365 -8.55508 -8.19199 -7.86905 -6.33748 -3.74105 3.20917 3.30601 3.38040 4.05725 4.23910 4.61877 4.75317 4.84656 5.07731 5.28218 5.35384 5.61103 5.63130 5.77651 5.82709 5.88491 5.91048 6.01496 6.22686 6.25909 6.47113 6.54612 6.67075 6.82292 6.86664 7.28333 7.54549 7.62502 8.15736 8.71450 9.26680 9.66544 10.18599 10.84277 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.061807 B = 0.006726 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.917352 B = 4161.725425 C = 4477.561057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.020 3.980 3 Si 0.927 3.073 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.102 0.898 9 N -0.567 5.567 10 C 0.439 3.561 11 O -0.598 6.598 12 C -0.106 4.106 13 C -0.063 4.063 14 H 0.080 0.920 15 C -0.116 4.116 16 C -0.125 4.125 17 C -0.157 4.157 18 C 0.087 3.913 19 H 0.078 0.922 20 N -0.838 5.838 21 H 0.270 0.730 22 H 0.393 0.607 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.333 0.667 32 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.142 -13.241 2.033 13.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.181 4.181 3 Si 0.755 3.245 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.203 5.203 10 C 0.226 3.774 11 O -0.484 6.484 12 C -0.147 4.147 13 C -0.082 4.082 14 H 0.099 0.901 15 C -0.153 4.153 16 C -0.163 4.163 17 C -0.196 4.196 18 C -0.025 4.025 19 H 0.096 0.904 20 N -0.367 5.367 21 H 0.080 0.920 22 H 0.226 0.774 23 H 0.097 0.903 24 H 0.095 0.905 25 H 0.102 0.898 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.145 0.855 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.704 -12.569 1.411 12.667 hybrid contribution 0.024 0.158 0.754 0.771 sum 0.728 -12.410 2.165 12.619 Atomic orbital electron populations 1.69630 1.05899 1.27875 1.51040 1.25253 0.95608 0.99645 0.97595 0.85831 0.79674 0.81361 0.77646 1.19315 1.20814 1.20835 1.19762 0.93347 0.82506 1.47192 0.88025 1.41942 1.09237 1.04728 1.64348 1.20230 0.88366 0.85335 0.83497 1.90472 1.14150 1.87585 1.56188 1.21272 0.97869 0.92330 1.03208 1.21686 0.95820 0.91803 0.98899 0.90118 1.22556 1.00956 0.95078 0.96720 1.22357 0.97505 0.96319 1.00137 1.23035 0.98435 0.98858 0.99318 1.22175 0.87510 0.95102 0.97737 0.90399 1.58977 1.15563 1.31574 1.30568 0.92036 0.77411 0.90321 0.90465 0.89797 0.92402 0.91811 0.92382 0.92347 0.92175 0.85468 0.84568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.26 13.05 55.50 0.72 -24.54 16 2 C 0.02 0.55 5.50 -17.46 -0.10 0.46 16 3 Si 0.93 21.50 29.55 -169.99 -5.02 16.48 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.30 -8.54 9.68 -14.93 -0.14 -8.69 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 9 N -0.57 -14.87 5.29 -10.96 -0.06 -14.93 16 10 C 0.44 10.60 7.57 -10.98 -0.08 10.52 16 11 O -0.60 -16.17 14.08 5.55 0.08 -16.09 16 12 C -0.11 -1.95 4.40 -27.88 -0.12 -2.07 16 13 C -0.06 -1.02 2.41 -88.96 -0.21 -1.23 16 14 H 0.08 1.44 8.02 -51.93 -0.42 1.02 16 15 C -0.12 -1.84 5.63 -24.74 -0.14 -1.98 16 16 C -0.13 -1.58 6.83 -25.07 -0.17 -1.75 16 17 C -0.16 -1.74 6.58 -25.61 -0.17 -1.91 16 18 C 0.09 1.09 3.90 -66.59 -0.26 0.83 16 19 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 20 N -0.84 -9.73 7.90 -3.71 -0.03 -9.76 16 21 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 22 H 0.39 9.98 7.90 -40.82 -0.32 9.66 16 23 H 0.08 1.41 8.14 -51.92 -0.42 0.99 16 24 H 0.08 1.32 6.83 -51.93 -0.35 0.97 16 25 H 0.08 1.58 7.06 -51.93 -0.37 1.21 16 26 H 0.06 0.91 8.02 -51.93 -0.42 0.49 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.59 7.92 -51.93 -0.41 0.18 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.33 3.13 9.07 -39.29 -0.36 2.77 16 32 H 0.34 3.92 8.05 -39.29 -0.32 3.60 16 LS Contribution 262.72 15.07 3.96 3.96 Total: -1.00 -30.56 262.72 -6.33 -36.89 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -4.58 Total: 13.80 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -1.40 Total: -5.82 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.64 Total: -49.22 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.08 Total: -16.09 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.56 -6.33 -36.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405574194.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.738 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds