Wall clock time and date at job start Mon Mar 30 2020 02:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 117.00262 * 2 1 4 4 O 1.20828 * 119.99845 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00154 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.47247 * 60.00272 * 5 3 2 7 7 C 1.53006 * 109.46866 * 180.02562 * 5 3 2 8 8 C 1.52999 * 109.46626 * 179.97438 * 7 5 3 9 9 C 1.52997 * 109.47592 * 300.00035 * 8 7 5 10 10 H 1.09000 * 109.47140 * 300.00346 * 9 8 7 11 11 C 1.50699 * 109.47265 * 180.02562 * 9 8 7 12 12 H 1.07996 * 120.00370 * 239.99848 * 11 9 8 13 13 C 1.37882 * 119.99790 * 60.00230 * 11 9 8 14 14 N 1.31508 * 120.00258 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 119.99622 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47409 * 59.99864 * 15 13 11 17 17 H 1.48506 * 109.47036 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47066 * 299.99495 * 15 13 11 19 19 C 1.52996 * 109.47165 * 60.00300 * 9 8 7 20 20 C 1.52997 * 109.47265 * 300.00086 * 5 3 2 21 21 H 1.08994 * 109.47299 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46752 * 299.99695 * 1 2 3 23 23 H 1.09001 * 109.46943 * 59.99499 * 1 2 3 24 24 H 1.08993 * 109.46955 * 300.00219 * 7 5 3 25 25 H 1.09000 * 109.47050 * 60.00048 * 7 5 3 26 26 H 1.09000 * 109.47160 * 60.00369 * 8 7 5 27 27 H 1.09002 * 109.46719 * 180.02562 * 8 7 5 28 28 H 0.97002 * 120.00082 * 179.97438 * 14 13 11 29 29 H 1.08992 * 109.47534 * 180.02562 * 19 9 8 30 30 H 1.08996 * 109.47134 * 59.99508 * 19 9 8 31 31 H 1.09000 * 109.47140 * 300.00252 * 20 5 3 32 32 H 1.09001 * 109.47230 * 59.99396 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.0001 2.7421 0.0002 8 6 5.5280 2.8221 0.0002 9 6 6.0751 2.1279 1.2491 10 1 5.6854 2.6215 2.1393 11 6 7.5800 2.2072 1.2493 12 1 8.1686 1.3017 1.2488 13 6 8.2055 3.4360 1.2503 14 7 7.4889 4.5387 1.2505 15 14 10.0709 3.5343 1.2500 16 1 10.6019 2.8624 0.0367 17 1 10.4916 4.9586 1.2506 18 1 10.6024 2.8603 2.4618 19 6 5.6414 0.6607 1.2483 20 6 4.1139 0.5810 1.2483 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8900 24 1 3.6100 3.2367 -0.8892 25 1 3.6108 3.2356 0.8907 26 1 5.9177 2.3285 -0.8900 27 1 5.8371 3.8674 0.0012 28 1 7.9290 5.4031 1.2516 29 1 6.0307 0.1662 2.1381 30 1 6.0310 0.1671 0.3580 31 1 3.7245 1.0749 2.1385 32 1 3.8048 -0.4643 1.2482 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575431716.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:10 Heat of formation + Delta-G solvation = -115.661761 kcal Electronic energy + Delta-G solvation = -14426.573285 eV Core-core repulsion = 11965.119043 eV Total energy + Delta-G solvation = -2461.454242 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.37131 -37.48829 -36.12289 -32.97538 -30.25194 -29.74198 -27.62786 -25.16698 -22.37913 -21.66354 -20.09837 -18.79801 -17.19153 -16.45827 -16.21810 -16.11966 -14.63193 -13.97417 -13.62430 -13.30806 -12.87846 -12.76167 -12.24370 -12.15660 -11.64936 -11.39420 -11.03488 -10.79722 -10.69402 -10.61348 -10.55867 -10.23068 -9.95359 -9.84249 -9.36605 -8.91496 -8.66851 -8.27661 -5.95289 -4.01850 2.47684 2.95517 3.33762 3.38815 3.41041 4.46072 5.01265 5.11528 5.16835 5.30161 5.35267 5.36661 5.49928 5.80883 6.04558 6.21764 6.33810 6.39624 6.51598 6.60480 6.68654 6.72605 6.90636 7.12401 7.25750 7.50975 7.77182 8.00388 8.03713 8.17350 8.48860 9.02241 9.62850 11.10316 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.075900 B = 0.006918 C = 0.006522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.818932 B = 4046.308222 C = 4291.967043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.362 6.362 3 C 0.463 3.537 4 O -0.511 6.511 5 C -0.074 4.074 6 H 0.103 0.897 7 C -0.101 4.101 8 C -0.109 4.109 9 C 0.045 3.955 10 H 0.026 0.974 11 C -0.514 4.514 12 H 0.054 0.946 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.890 3.110 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.107 4.107 20 C -0.106 4.106 21 H 0.097 0.903 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.036 0.964 27 H 0.097 0.903 28 H 0.260 0.740 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.460 -7.723 -2.418 12.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.278 6.278 3 C 0.307 3.693 4 O -0.399 6.399 5 C -0.093 4.093 6 H 0.120 0.880 7 C -0.138 4.138 8 C -0.147 4.147 9 C 0.027 3.973 10 H 0.044 0.956 11 C -0.552 4.552 12 H 0.072 0.928 13 C -0.140 4.140 14 N -0.529 5.529 15 Si 0.718 3.282 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.204 1.204 19 C -0.145 4.145 20 C -0.144 4.144 21 H 0.115 0.885 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.055 0.945 27 H 0.115 0.885 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.671 -7.224 -2.415 12.310 hybrid contribution 0.693 0.182 -0.056 0.718 sum -8.979 -7.041 -2.471 11.675 Atomic orbital electron populations 1.23187 0.77402 1.03173 1.02264 1.86555 1.22665 1.34286 1.84341 1.24454 0.92712 0.80819 0.71345 1.90622 1.67354 1.36450 1.45430 1.21283 0.84627 1.01365 1.02068 0.87954 1.21594 0.99622 0.90961 1.01646 1.21669 0.89188 1.04943 0.98930 1.18700 0.95119 0.89145 0.94365 0.95551 1.21181 0.91433 0.92110 1.50474 0.92772 1.24973 0.97938 0.95897 0.95199 1.69859 1.34908 0.97418 1.50755 0.86701 0.86129 0.76845 0.78542 1.20351 1.21377 1.20363 1.21631 0.91323 1.00877 1.00632 1.21554 0.98696 0.98883 0.95260 0.88500 0.92170 0.92240 0.93018 0.91982 0.94523 0.88483 0.92980 0.92863 0.92995 0.92170 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 101.05 1.07 1.43 16 2 O -0.36 -5.29 10.47 -39.26 -0.41 -5.70 16 3 C 0.46 7.88 7.26 36.01 0.26 8.14 16 4 O -0.51 -9.90 15.73 -18.75 -0.29 -10.19 16 5 C -0.07 -1.29 2.63 -91.77 -0.24 -1.53 16 6 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 7 C -0.10 -2.01 4.49 -26.73 -0.12 -2.13 16 8 C -0.11 -2.53 4.98 -26.73 -0.13 -2.66 16 9 C 0.05 1.09 2.10 -91.78 -0.19 0.90 16 10 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 11 C -0.51 -13.86 8.56 -34.44 -0.29 -14.16 16 12 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 13 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 14 N -0.89 -25.31 11.32 55.43 0.63 -24.68 16 15 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C -0.11 -2.13 5.14 -26.76 -0.14 -2.27 16 20 C -0.11 -1.83 5.13 -26.76 -0.14 -1.97 16 21 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 23 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 24 H 0.05 0.99 8.10 -51.93 -0.42 0.57 16 25 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.10 2.54 6.07 -51.93 -0.32 2.23 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 LS Contribution 264.22 15.07 3.98 3.98 Total: -1.00 -29.32 264.22 -6.06 -35.38 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -4.92 Total: -2.23 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -0.02 Total: -12.66 kcal Atomic # 7 Polarization: -25.31 SS G_CDS: 0.63 Total: -24.68 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.71 Total: -15.89 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.32 -6.06 -35.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575431716.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.279 kcal (2) G-P(sol) polarization free energy of solvation -29.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds