Wall clock time and date at job start Mon Mar 30 2020 03:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99754 * 2 1 4 4 H 1.48504 * 109.47125 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47493 * 300.00132 * 3 2 1 6 6 H 1.48508 * 109.47160 * 60.00173 * 3 2 1 7 7 C 1.38810 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00239 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99623 * 0.02562 * 7 2 1 10 10 C 1.47476 * 125.66663 * 0.02562 * 9 7 2 11 11 C 1.55025 * 104.90450 * 155.96589 * 10 9 7 12 12 C 1.54509 * 101.53426 * 36.37748 * 11 10 9 13 13 C 1.47183 * 125.65963 * 179.97438 * 9 7 2 14 14 C 1.52336 * 110.16785 * 206.83459 * 12 11 10 15 15 N 1.47151 * 109.32645 * 182.55804 * 14 12 11 16 16 C 1.47021 * 110.66385 * 57.36125 * 15 14 12 17 17 C 1.53100 * 109.39217 * 300.81000 * 16 15 14 18 18 O 1.42151 * 110.30589 * 83.78861 * 12 11 10 19 19 H 0.97000 * 119.99836 * 359.97438 * 1 2 3 20 20 H 1.09011 * 110.35495 * 37.11406 * 10 9 7 21 21 H 1.09000 * 110.44815 * 274.87418 * 10 9 7 22 22 H 1.09001 * 111.01510 * 278.31145 * 11 10 9 23 23 H 1.08999 * 111.04959 * 154.45688 * 11 10 9 24 24 H 1.08998 * 109.90688 * 62.16083 * 13 9 7 25 25 H 1.08995 * 109.90887 * 300.89028 * 13 9 7 26 26 H 1.08990 * 109.49449 * 302.51275 * 14 12 11 27 27 H 1.09005 * 109.49511 * 62.60648 * 14 12 11 28 28 H 1.00897 * 111.00151 * 181.07570 * 15 14 12 29 29 H 1.08996 * 109.47951 * 60.78432 * 16 15 14 30 30 H 1.08997 * 109.48380 * 180.83195 * 16 15 14 31 31 H 1.09001 * 109.51453 * 177.35195 * 17 16 15 32 32 H 1.08998 * 109.51675 * 297.52345 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1419 -2.5336 -0.0005 11 6 -0.4031 -3.9348 -0.6103 12 6 0.7808 -4.7462 -0.0382 13 6 1.9323 -3.7290 0.0005 14 6 1.1208 -5.9049 -0.9669 15 7 2.2084 -6.7002 -0.3753 16 6 1.8288 -7.1865 0.9592 17 6 1.5153 -5.9927 1.8651 18 8 0.4741 -5.2109 1.2697 19 1 -0.4850 0.8401 0.0004 20 1 -0.5992 -1.7603 -0.6179 21 1 -0.5301 -2.4844 1.0168 22 1 -0.3639 -3.9008 -1.6990 23 1 -1.3557 -4.3392 -0.2681 24 1 2.5213 -3.8699 0.9068 25 1 2.5647 -3.8503 -0.8789 26 1 0.2411 -6.5343 -1.1004 27 1 1.4397 -5.5148 -1.9335 28 1 2.4662 -7.4661 -0.9794 29 1 0.9472 -7.8221 0.8773 30 1 2.6523 -7.7597 1.3851 31 1 1.1884 -6.3520 2.8409 32 1 2.4091 -5.3800 1.9824 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642818048.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:11 Heat of formation + Delta-G solvation = -7.162620 kcal Electronic energy + Delta-G solvation = -15007.514912 eV Core-core repulsion = 12583.058297 eV Total energy + Delta-G solvation = -2424.456615 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.70794 -36.03513 -34.31112 -32.49187 -30.21073 -28.53919 -26.95699 -25.01630 -23.69826 -21.76256 -20.22235 -18.65160 -17.04053 -16.39031 -15.81676 -14.81971 -14.52404 -14.37055 -13.94170 -13.78733 -13.22774 -13.02083 -12.08318 -11.94780 -11.52417 -11.34399 -10.97069 -10.85716 -10.80476 -10.38362 -10.03188 -10.00204 -9.69289 -9.50964 -9.14620 -8.56645 -8.31912 -6.72966 -5.57043 -2.97798 3.44679 3.49829 3.52673 4.15213 4.21522 4.55559 5.09191 5.16255 5.24999 5.34239 5.45294 5.56963 5.62407 5.76174 5.84243 5.92047 6.04669 6.15259 6.35269 6.58239 6.65090 6.76795 6.84680 6.98648 7.33882 7.65669 7.71542 7.78440 7.93644 8.43962 9.30664 9.91420 10.57749 11.47127 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.056149 B = 0.008676 C = 0.008343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.557347 B = 3226.556183 C = 3355.406778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.217 4.217 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.157 3.843 11 C -0.133 4.133 12 C 0.107 3.893 13 C 0.130 3.870 14 C 0.042 3.958 15 N -0.685 5.685 16 C 0.023 3.977 17 C 0.058 3.942 18 O -0.365 6.365 19 H 0.250 0.750 20 H 0.106 0.894 21 H 0.016 0.984 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.026 0.974 25 H 0.032 0.968 26 H 0.034 0.966 27 H 0.086 0.914 28 H 0.340 0.660 29 H 0.034 0.966 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.468 -13.109 -0.499 13.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.209 4.209 3 Si 0.745 3.255 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.346 4.346 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.032 3.968 11 C -0.172 4.172 12 C 0.066 3.934 13 C 0.004 3.996 14 C -0.088 4.088 15 N -0.316 5.316 16 C -0.107 4.107 17 C -0.019 4.019 18 O -0.284 6.284 19 H 0.061 0.939 20 H 0.124 0.876 21 H 0.034 0.966 22 H 0.091 0.909 23 H 0.085 0.915 24 H 0.044 0.956 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.105 0.895 28 H 0.157 0.843 29 H 0.052 0.948 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.609 -12.286 -0.158 12.392 hybrid contribution 0.128 -0.080 -0.229 0.274 sum 1.737 -12.366 -0.387 12.494 Atomic orbital electron populations 1.69818 1.04847 1.24497 1.58044 1.24786 0.95739 0.97645 1.02772 0.85998 0.78634 0.83706 0.77187 1.20575 1.21799 1.21832 1.19133 0.90512 0.82484 1.42429 0.90515 1.44569 1.01970 0.99733 1.86821 1.21914 0.84666 0.91735 0.98461 1.23006 0.95688 0.98851 0.99667 1.22007 0.97319 0.91841 0.82204 1.21615 0.93631 0.85827 0.98543 1.22468 0.92253 0.95383 0.98653 1.60578 1.39984 1.27038 1.04022 1.22588 0.99562 0.97347 0.91222 1.22637 0.92598 0.91275 0.95387 1.87906 1.40576 1.69707 1.30170 0.93872 0.87643 0.96643 0.90863 0.91476 0.95612 0.95003 0.94738 0.89537 0.84289 0.94768 0.90140 0.89073 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.74 10.09 55.49 0.56 -27.18 16 2 C -0.01 -0.42 5.49 -17.43 -0.10 -0.51 16 3 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.22 -6.32 10.28 -15.06 -0.15 -6.48 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 9 N -0.60 -16.47 3.40 -170.22 -0.58 -17.04 16 10 C 0.16 4.06 5.88 -2.44 -0.01 4.05 16 11 C -0.13 -2.72 6.21 -24.87 -0.15 -2.88 16 12 C 0.11 2.08 0.80 -89.81 -0.07 2.00 16 13 C 0.13 2.97 6.28 -3.31 -0.02 2.95 16 14 C 0.04 0.65 5.31 -4.03 -0.02 0.63 16 15 N -0.69 -9.42 6.78 -113.82 -0.77 -10.19 16 16 C 0.02 0.29 6.74 -3.71 -0.02 0.26 16 17 C 0.06 0.90 6.76 37.21 0.25 1.15 16 18 O -0.37 -7.17 10.31 -35.23 -0.36 -7.53 16 19 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 20 H 0.11 2.99 5.88 -51.92 -0.31 2.68 16 21 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 22 H 0.07 1.39 8.01 -51.93 -0.42 0.98 16 23 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 24 H 0.03 0.61 6.26 -51.93 -0.32 0.29 16 25 H 0.03 0.73 7.69 -51.93 -0.40 0.33 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.09 1.31 7.99 -51.93 -0.42 0.89 16 28 H 0.34 3.70 8.90 -39.29 -0.35 3.35 16 29 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.04 6.49 -51.93 -0.34 0.71 16 LS Contribution 251.43 15.07 3.79 3.79 Total: -1.00 -32.02 251.43 -7.33 -39.34 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -4.63 Total: -0.03 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -0.31 Total: 1.18 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.79 Total: -54.41 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.36 Total: -7.53 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -32.02 -7.33 -39.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642818048.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.180 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds