Wall clock time and date at job start Mon Mar 30 2020 03:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99754 * 2 1 4 4 H 1.48504 * 109.47125 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47493 * 300.00132 * 3 2 1 6 6 H 1.48508 * 109.47160 * 60.00173 * 3 2 1 7 7 C 1.38810 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00239 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99623 * 0.02562 * 7 2 1 10 10 C 1.47476 * 125.66663 * 0.02562 * 9 7 2 11 11 C 1.55025 * 104.90450 * 155.96589 * 10 9 7 12 12 C 1.54509 * 101.53426 * 36.37748 * 11 10 9 13 13 C 1.47183 * 125.65963 * 179.97438 * 9 7 2 14 14 C 1.52336 * 110.16785 * 206.83459 * 12 11 10 15 15 N 1.47151 * 109.32645 * 182.55804 * 14 12 11 16 16 C 1.47021 * 110.66385 * 57.36125 * 15 14 12 17 17 C 1.53100 * 109.39217 * 300.81000 * 16 15 14 18 18 O 1.42151 * 110.30589 * 83.78861 * 12 11 10 19 19 H 0.97000 * 119.99836 * 359.97438 * 1 2 3 20 20 H 1.09011 * 110.35495 * 37.11406 * 10 9 7 21 21 H 1.09000 * 110.44815 * 274.87418 * 10 9 7 22 22 H 1.09001 * 111.01510 * 278.31145 * 11 10 9 23 23 H 1.08999 * 111.04959 * 154.45688 * 11 10 9 24 24 H 1.08998 * 109.90688 * 62.16083 * 13 9 7 25 25 H 1.08995 * 109.90887 * 300.89028 * 13 9 7 26 26 H 1.08990 * 109.49449 * 302.51275 * 14 12 11 27 27 H 1.09005 * 109.49511 * 62.60648 * 14 12 11 28 28 H 1.00897 * 111.00151 * 181.07570 * 15 14 12 29 29 H 1.08996 * 109.47951 * 60.78432 * 16 15 14 30 30 H 1.08997 * 109.48380 * 180.83195 * 16 15 14 31 31 H 1.09001 * 109.51453 * 177.35195 * 17 16 15 32 32 H 1.08998 * 109.51675 * 297.52345 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1419 -2.5336 -0.0005 11 6 -0.4031 -3.9348 -0.6103 12 6 0.7808 -4.7462 -0.0382 13 6 1.9323 -3.7290 0.0005 14 6 1.1208 -5.9049 -0.9669 15 7 2.2084 -6.7002 -0.3753 16 6 1.8288 -7.1865 0.9592 17 6 1.5153 -5.9927 1.8651 18 8 0.4741 -5.2109 1.2697 19 1 -0.4850 0.8401 0.0004 20 1 -0.5992 -1.7603 -0.6179 21 1 -0.5301 -2.4844 1.0168 22 1 -0.3639 -3.9008 -1.6990 23 1 -1.3557 -4.3392 -0.2681 24 1 2.5213 -3.8699 0.9068 25 1 2.5647 -3.8503 -0.8789 26 1 0.2411 -6.5343 -1.1004 27 1 1.4397 -5.5148 -1.9335 28 1 2.4662 -7.4661 -0.9794 29 1 0.9472 -7.8221 0.8773 30 1 2.6523 -7.7597 1.3851 31 1 1.1884 -6.3520 2.8409 32 1 2.4091 -5.3800 1.9824 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642818048.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:11 Heat of formation + Delta-G solvation = -31.891789 kcal Electronic energy + Delta-G solvation = -15008.587249 eV Core-core repulsion = 12583.058297 eV Total energy + Delta-G solvation = -2425.528952 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.15838 -37.77516 -35.56993 -34.43035 -31.98358 -30.24173 -28.57228 -26.81756 -25.17884 -23.24808 -22.13168 -20.08648 -19.02741 -17.71719 -17.37137 -16.78015 -15.89028 -15.70989 -15.53615 -15.23325 -14.87756 -14.58279 -14.04409 -13.41839 -13.37396 -12.87696 -12.79040 -12.50560 -12.32980 -12.11333 -11.96403 -11.86699 -11.61794 -11.18997 -10.75498 -10.55244 -9.41458 -8.89889 -7.77785 -5.22820 1.45701 1.47623 1.58176 2.49085 2.79406 3.16089 3.31997 3.62232 3.86376 3.94605 4.00041 4.09215 4.27321 4.36962 4.58580 4.61223 4.70234 4.77139 4.80948 4.96211 5.02872 5.07770 5.16376 5.44516 5.60160 5.78065 5.86821 6.28349 6.36828 6.46504 7.09742 7.76314 8.41885 9.24714 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.056149 B = 0.008676 C = 0.008343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.557347 B = 3226.556183 C = 3355.406778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.069 4.069 3 Si 0.984 3.016 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.078 0.922 9 N -0.626 5.626 10 C 0.161 3.839 11 C -0.121 4.121 12 C 0.113 3.887 13 C 0.130 3.870 14 C 0.052 3.948 15 N -0.695 5.695 16 C 0.029 3.971 17 C 0.048 3.952 18 O -0.391 6.391 19 H 0.248 0.752 20 H 0.077 0.923 21 H -0.022 1.022 22 H 0.090 0.910 23 H 0.084 0.916 24 H 0.014 0.986 25 H 0.035 0.965 26 H 0.053 0.947 27 H 0.091 0.909 28 H 0.360 0.640 29 H 0.047 0.953 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.223 -14.764 -1.011 14.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.812 3.188 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.096 0.904 9 N -0.353 5.353 10 C 0.036 3.964 11 C -0.160 4.160 12 C 0.073 3.927 13 C 0.004 3.996 14 C -0.078 4.078 15 N -0.328 5.328 16 C -0.100 4.100 17 C -0.028 4.028 18 O -0.310 6.310 19 H 0.058 0.942 20 H 0.095 0.905 21 H -0.004 1.004 22 H 0.109 0.891 23 H 0.102 0.898 24 H 0.032 0.968 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.110 0.890 28 H 0.180 0.820 29 H 0.065 0.935 30 H 0.127 0.873 31 H 0.133 0.867 32 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.386 -13.987 -0.677 14.205 hybrid contribution -0.082 0.420 0.010 0.428 sum 2.304 -13.567 -0.667 13.777 Atomic orbital electron populations 1.70071 1.06266 1.25035 1.58575 1.25695 0.96732 1.01101 1.02614 0.84922 0.77980 0.78993 0.76883 1.19160 1.21319 1.21927 1.19496 0.90946 0.83824 1.42665 0.90381 1.44896 1.02715 1.00934 1.86726 1.21665 0.84099 0.94516 0.96160 1.22869 0.97221 0.95448 1.00424 1.21890 0.94890 0.92554 0.83394 1.21750 0.94957 0.85034 0.97833 1.22269 0.93727 0.94338 0.97506 1.60501 1.39342 1.28162 1.04842 1.22565 1.01241 0.96045 0.90138 1.22926 0.90989 0.91738 0.97191 1.87864 1.42143 1.70573 1.30430 0.94237 0.90523 1.00375 0.89118 0.89756 0.96847 0.94692 0.92851 0.89036 0.81964 0.93474 0.87326 0.86728 0.93988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.75 10.09 21.65 0.22 -58.53 16 2 C -0.07 -4.09 5.49 84.86 0.47 -3.62 16 3 Si 0.98 47.19 29.55 68.60 2.03 49.21 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 6 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 7 C -0.24 -14.29 10.28 84.03 0.86 -13.43 16 8 H 0.08 4.47 7.83 -2.92 -0.02 4.45 16 9 N -0.63 -34.92 3.40 -692.46 -2.36 -37.27 16 10 C 0.16 8.58 5.88 86.89 0.51 9.09 16 11 C -0.12 -4.86 6.21 31.80 0.20 -4.66 16 12 C 0.11 4.27 0.80 -10.27 -0.01 4.26 16 13 C 0.13 5.93 6.28 86.48 0.54 6.47 16 14 C 0.05 1.45 5.31 86.04 0.46 1.90 16 15 N -0.69 -16.77 6.78 -514.02 -3.49 -20.25 16 16 C 0.03 0.65 6.74 86.31 0.58 1.23 16 17 C 0.05 1.40 6.76 72.02 0.49 1.89 16 18 O -0.39 -14.94 10.31 -148.98 -1.54 -16.47 16 19 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 20 H 0.08 4.53 5.88 -2.38 -0.01 4.51 16 21 H -0.02 -1.29 8.14 -2.39 -0.02 -1.31 16 22 H 0.09 3.31 8.01 -2.39 -0.02 3.29 16 23 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 24 H 0.01 0.65 6.26 -2.39 -0.01 0.64 16 25 H 0.04 1.57 7.69 -2.39 -0.02 1.55 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.09 2.49 7.99 -2.38 -0.02 2.47 16 28 H 0.36 6.38 8.90 -89.70 -0.80 5.58 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.04 1.38 6.49 -2.39 -0.02 1.37 16 Total: -1.00 -70.57 251.43 -0.72 -71.29 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 0.31 Total: 8.89 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 4.10 Total: 3.13 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -5.62 Total: -116.05 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -1.54 Total: -16.47 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.21 kcal Total: -70.57 -0.72 -71.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642818048.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.398 kcal (2) G-P(sol) polarization free energy of solvation -70.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds