Wall clock time and date at job start Mon Mar 30 2020 02:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.46794 * 2 1 4 4 C 1.50702 * 109.47190 * 240.00037 * 2 1 3 5 5 H 1.08001 * 119.99829 * 245.26493 * 4 2 1 6 6 C 1.37875 * 120.00165 * 65.25964 * 4 2 1 7 7 N 1.31518 * 119.99608 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00048 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47201 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46831 * 119.99910 * 8 6 4 11 11 H 1.48496 * 109.47161 * 240.00304 * 8 6 4 12 12 C 1.53003 * 109.46972 * 120.00142 * 2 1 3 13 13 C 1.50703 * 115.55137 * 54.62464 * 12 2 1 14 14 O 1.20820 * 119.99749 * 208.33767 * 13 12 2 15 15 O 1.34224 * 119.99666 * 28.34080 * 13 12 2 16 16 C 1.52995 * 117.49670 * 200.29792 * 12 2 1 17 17 C 1.53001 * 60.00259 * 107.50940 * 16 12 2 18 18 C 1.52993 * 117.50024 * 252.50957 * 17 16 12 19 19 C 1.53001 * 117.49580 * 107.48499 * 17 16 12 20 20 H 1.08998 * 109.47062 * 62.91947 * 1 2 3 21 21 H 1.09010 * 109.46907 * 182.91409 * 1 2 3 22 22 H 1.08997 * 109.47545 * 302.91560 * 1 2 3 23 23 H 0.97005 * 119.99412 * 179.97438 * 7 6 4 24 24 H 0.96707 * 116.99812 * 179.97438 * 15 13 12 25 25 H 1.08998 * 117.49894 * 214.99707 * 16 12 2 26 26 H 1.08997 * 117.50044 * 0.02562 * 16 12 2 27 27 H 1.09007 * 109.46961 * 133.97892 * 18 17 16 28 28 H 1.09004 * 109.47358 * 253.97733 * 18 17 16 29 29 H 1.08998 * 109.47294 * 13.98290 * 18 17 16 30 30 H 1.08993 * 109.47415 * 351.38340 * 19 17 16 31 31 H 1.09005 * 109.46812 * 111.38753 * 19 17 16 32 32 H 1.09003 * 109.46999 * 231.37764 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5814 -1.6354 -1.1336 6 6 1.7911 -0.1795 -2.4798 7 7 1.1229 0.9471 -2.5977 8 14 2.4144 -1.0598 -4.0050 9 1 3.1317 -2.2967 -3.6042 10 1 1.2652 -1.4147 -4.8760 11 1 3.3412 -0.1680 -4.7471 12 6 2.0400 -0.7213 1.2493 13 6 1.5145 -2.1190 1.4529 14 8 1.4158 -2.5706 2.5691 15 8 1.1562 -2.8621 0.3941 16 6 3.4755 -0.4345 1.6940 17 6 2.2996 0.1247 2.4974 18 6 2.0292 1.6274 2.4011 19 6 2.0059 -0.5132 3.8567 20 1 -0.3633 0.4678 -0.9150 21 1 -0.3633 -1.0264 0.0523 22 1 -0.3634 0.5584 0.8626 23 1 0.9534 1.3208 -3.4767 24 1 0.8253 -3.7526 0.5745 25 1 4.0399 -1.2567 2.1339 26 1 4.0565 0.2684 1.0969 27 1 0.9630 1.7957 2.2486 28 1 2.3452 2.1134 3.3242 29 1 2.5864 2.0439 1.5620 30 1 2.6206 -1.4048 3.9801 31 1 2.2353 0.1989 4.6495 32 1 0.9524 -0.7881 3.9091 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642824055.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:48 Heat of formation + Delta-G solvation = -79.618771 kcal Electronic energy + Delta-G solvation = -15064.551195 eV Core-core repulsion = 12604.659895 eV Total energy + Delta-G solvation = -2459.891300 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.13353 -37.51650 -35.37544 -33.42821 -30.51380 -28.53246 -26.96546 -25.00460 -24.00860 -21.39607 -19.87419 -18.08161 -17.13539 -16.31080 -14.99667 -14.87181 -14.34777 -13.75092 -13.45218 -13.31093 -12.59631 -12.30730 -11.93773 -11.73162 -11.50524 -11.25182 -10.98283 -10.86492 -10.75686 -10.73278 -10.43171 -10.16634 -10.04382 -9.41184 -9.15759 -8.95895 -8.53322 -8.29096 -5.94343 -3.95728 2.84164 3.33208 3.41459 3.46226 3.78430 4.36571 4.52799 5.22068 5.35874 5.44295 5.56395 5.61278 6.03798 6.11100 6.18777 6.29872 6.39293 6.42743 6.49422 6.61578 6.69628 6.86881 6.92616 7.13377 7.21836 7.28991 7.73042 7.93999 8.08928 8.46684 8.72783 9.06999 9.66843 11.13806 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.035596 B = 0.011744 C = 0.010338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.408292 B = 2383.665694 C = 2707.836036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.082 3.918 3 H 0.046 0.954 4 C -0.489 4.489 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.889 3.111 9 H -0.274 1.274 10 H -0.287 1.287 11 H -0.287 1.287 12 C -0.105 4.105 13 C 0.526 3.474 14 O -0.544 6.544 15 O -0.480 6.480 16 C -0.140 4.140 17 C -0.108 4.108 18 C -0.110 4.110 19 C -0.100 4.100 20 H 0.077 0.923 21 H 0.028 0.972 22 H 0.008 0.992 23 H 0.258 0.742 24 H 0.388 0.612 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.480 -1.893 7.358 7.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.064 3.936 3 H 0.064 0.936 4 C -0.527 4.527 5 H 0.079 0.921 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.718 3.282 9 H -0.199 1.199 10 H -0.213 1.213 11 H -0.213 1.213 12 C -0.106 4.106 13 C 0.372 3.628 14 O -0.436 6.436 15 O -0.287 6.287 16 C -0.177 4.177 17 C -0.108 4.108 18 C -0.167 4.167 19 C -0.157 4.157 20 H 0.096 0.904 21 H 0.047 0.953 22 H 0.027 0.973 23 H 0.067 0.933 24 H 0.243 0.757 25 H 0.105 0.895 26 H 0.125 0.875 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.541 -1.488 7.416 7.720 hybrid contribution 0.007 -1.175 -0.913 1.488 sum 1.548 -2.664 6.504 7.196 Atomic orbital electron populations 1.21800 0.98595 0.98723 1.00117 1.18338 0.92319 0.95356 0.87623 0.93637 1.21120 1.33925 1.07742 0.89963 0.92110 1.24915 0.95491 0.94999 0.98810 1.69929 1.41113 1.19343 1.23241 0.86573 0.78475 0.79770 0.83367 1.19853 1.21294 1.21346 1.21593 0.99962 0.89638 0.99420 1.22518 0.72269 0.86953 0.81090 1.90608 1.53485 1.73566 1.25971 1.84935 1.75710 1.29601 1.38451 1.23188 0.89788 1.02778 1.01931 1.21706 1.02112 0.94975 0.92022 1.21334 1.02252 0.91802 1.01288 1.21337 1.02241 0.99099 0.93062 0.90405 0.95291 0.97328 0.93258 0.75677 0.89539 0.87539 0.92008 0.92805 0.91622 0.92014 0.93657 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 8.84 37.16 0.33 -2.89 16 2 C 0.08 1.96 1.59 -91.77 -0.15 1.82 16 3 H 0.05 1.16 6.37 -51.93 -0.33 0.83 16 4 C -0.49 -12.95 7.41 -34.44 -0.26 -13.20 16 5 H 0.06 1.63 6.98 -52.49 -0.37 1.27 16 6 C 0.06 1.57 5.31 -17.82 -0.09 1.48 16 7 N -0.90 -25.22 11.71 55.43 0.65 -24.57 16 8 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 C -0.11 -2.18 1.55 -155.66 -0.24 -2.43 16 13 C 0.53 10.83 7.03 36.01 0.25 11.09 16 14 O -0.54 -11.25 13.92 -18.75 -0.26 -11.52 16 15 O -0.48 -9.35 10.40 -39.24 -0.41 -9.76 16 16 C -0.14 -2.56 9.25 -26.73 -0.25 -2.81 16 17 C -0.11 -1.93 2.70 -154.51 -0.42 -2.35 16 18 C -0.11 -1.80 8.69 37.15 0.32 -1.47 16 19 C -0.10 -1.66 8.10 37.16 0.30 -1.36 16 20 H 0.08 2.04 6.44 -51.93 -0.33 1.71 16 21 H 0.03 0.67 6.58 -51.92 -0.34 0.33 16 22 H 0.01 0.17 7.70 -51.93 -0.40 -0.23 16 23 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 24 H 0.39 5.37 9.10 45.56 0.41 5.78 16 25 H 0.09 1.48 8.05 -51.93 -0.42 1.06 16 26 H 0.11 1.92 8.08 -51.93 -0.42 1.50 16 27 H 0.06 1.04 7.70 -51.92 -0.40 0.64 16 28 H 0.05 0.73 8.01 -51.93 -0.42 0.32 16 29 H 0.06 1.12 6.96 -51.93 -0.36 0.76 16 30 H 0.06 1.05 6.87 -51.93 -0.36 0.70 16 31 H 0.04 0.63 7.99 -51.93 -0.41 0.22 16 32 H 0.06 1.04 7.43 -51.93 -0.39 0.65 16 LS Contribution 259.92 15.07 3.92 3.92 Total: -1.00 -29.67 259.92 -4.98 -34.65 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -3.67 Total: 3.17 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -0.20 Total: -12.12 kcal Atomic # 7 Polarization: -25.22 SS G_CDS: 0.65 Total: -24.57 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.67 Total: -21.28 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.67 -4.98 -34.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642824055.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.968 kcal (2) G-P(sol) polarization free energy of solvation -29.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds