Wall clock time and date at job start Mon Mar 30 2020 02:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.46794 * 2 1 4 4 C 1.50702 * 109.47190 * 240.00037 * 2 1 3 5 5 H 1.08001 * 119.99829 * 245.26493 * 4 2 1 6 6 C 1.37875 * 120.00165 * 65.25964 * 4 2 1 7 7 N 1.31518 * 119.99608 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00048 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47201 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46831 * 119.99910 * 8 6 4 11 11 H 1.48496 * 109.47161 * 240.00304 * 8 6 4 12 12 C 1.53003 * 109.46972 * 120.00142 * 2 1 3 13 13 C 1.50703 * 115.55137 * 54.62464 * 12 2 1 14 14 O 1.20820 * 119.99749 * 208.33767 * 13 12 2 15 15 O 1.34224 * 119.99666 * 28.34080 * 13 12 2 16 16 C 1.52995 * 117.49670 * 200.29792 * 12 2 1 17 17 C 1.53001 * 60.00259 * 107.50940 * 16 12 2 18 18 C 1.52993 * 117.50024 * 252.50957 * 17 16 12 19 19 C 1.53001 * 117.49580 * 107.48499 * 17 16 12 20 20 H 1.08998 * 109.47062 * 62.91947 * 1 2 3 21 21 H 1.09010 * 109.46907 * 182.91409 * 1 2 3 22 22 H 1.08997 * 109.47545 * 302.91560 * 1 2 3 23 23 H 0.97005 * 119.99412 * 179.97438 * 7 6 4 24 24 H 0.96707 * 116.99812 * 179.97438 * 15 13 12 25 25 H 1.08998 * 117.49894 * 214.99707 * 16 12 2 26 26 H 1.08997 * 117.50044 * 0.02562 * 16 12 2 27 27 H 1.09007 * 109.46961 * 133.97892 * 18 17 16 28 28 H 1.09004 * 109.47358 * 253.97733 * 18 17 16 29 29 H 1.08998 * 109.47294 * 13.98290 * 18 17 16 30 30 H 1.08993 * 109.47415 * 351.38340 * 19 17 16 31 31 H 1.09005 * 109.46812 * 111.38753 * 19 17 16 32 32 H 1.09003 * 109.46999 * 231.37764 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5814 -1.6354 -1.1336 6 6 1.7911 -0.1795 -2.4798 7 7 1.1229 0.9471 -2.5977 8 14 2.4144 -1.0598 -4.0050 9 1 3.1317 -2.2967 -3.6042 10 1 1.2652 -1.4147 -4.8760 11 1 3.3412 -0.1680 -4.7471 12 6 2.0400 -0.7213 1.2493 13 6 1.5145 -2.1190 1.4529 14 8 1.4158 -2.5706 2.5691 15 8 1.1562 -2.8621 0.3941 16 6 3.4755 -0.4345 1.6940 17 6 2.2996 0.1247 2.4974 18 6 2.0292 1.6274 2.4011 19 6 2.0059 -0.5132 3.8567 20 1 -0.3633 0.4678 -0.9150 21 1 -0.3633 -1.0264 0.0523 22 1 -0.3634 0.5584 0.8626 23 1 0.9534 1.3208 -3.4767 24 1 0.8253 -3.7526 0.5745 25 1 4.0399 -1.2567 2.1339 26 1 4.0565 0.2684 1.0969 27 1 0.9630 1.7957 2.2486 28 1 2.3452 2.1134 3.3242 29 1 2.5864 2.0439 1.5620 30 1 2.6206 -1.4048 3.9801 31 1 2.2353 0.1989 4.6495 32 1 0.9524 -0.7881 3.9091 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642824055.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:47 Heat of formation + Delta-G solvation = -97.421023 kcal Electronic energy + Delta-G solvation = -15065.323159 eV Core-core repulsion = 12604.659895 eV Total energy + Delta-G solvation = -2460.663264 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.68334 -39.04057 -36.96850 -35.33037 -32.38463 -30.03255 -28.29127 -27.05433 -25.57779 -23.20042 -21.43815 -19.56792 -18.73204 -18.26627 -16.82138 -16.45908 -16.07651 -15.35497 -14.93801 -14.76549 -14.37281 -13.75543 -13.62965 -13.31920 -13.05626 -12.81097 -12.79204 -12.70256 -12.40134 -12.26324 -12.14104 -12.01028 -11.77394 -11.10739 -10.85703 -10.62201 -10.34648 -10.22887 -8.00657 -6.06974 1.28011 1.43179 1.46677 1.56833 2.34257 2.50065 2.91824 3.30104 3.76708 3.96329 4.12616 4.25630 4.48433 4.78829 4.84640 4.86908 4.92710 4.98868 5.11169 5.12029 5.17650 5.27211 5.34459 5.36722 5.58037 5.68836 5.79471 5.97534 6.06785 6.46824 7.00619 7.27505 7.58015 9.06557 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.035596 B = 0.011744 C = 0.010338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.408292 B = 2383.665694 C = 2707.836036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.087 3.913 3 H 0.026 0.974 4 C -0.492 4.492 5 H 0.054 0.946 6 C 0.010 3.990 7 N -0.924 5.924 8 Si 0.945 3.055 9 H -0.269 1.269 10 H -0.287 1.287 11 H -0.285 1.285 12 C -0.137 4.137 13 C 0.526 3.474 14 O -0.548 6.548 15 O -0.493 6.493 16 C -0.132 4.132 17 C -0.093 4.093 18 C -0.109 4.109 19 C -0.095 4.095 20 H 0.049 0.951 21 H 0.027 0.973 22 H 0.023 0.977 23 H 0.257 0.743 24 H 0.410 0.590 25 H 0.100 0.900 26 H 0.105 0.895 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.108 -2.254 8.344 8.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.069 3.931 3 H 0.044 0.956 4 C -0.531 4.531 5 H 0.072 0.928 6 C -0.187 4.187 7 N -0.565 5.565 8 Si 0.772 3.228 9 H -0.194 1.194 10 H -0.214 1.214 11 H -0.211 1.211 12 C -0.138 4.138 13 C 0.372 3.628 14 O -0.441 6.441 15 O -0.304 6.304 16 C -0.169 4.169 17 C -0.093 4.093 18 C -0.166 4.166 19 C -0.151 4.151 20 H 0.068 0.932 21 H 0.046 0.954 22 H 0.042 0.958 23 H 0.066 0.934 24 H 0.269 0.731 25 H 0.118 0.882 26 H 0.123 0.877 27 H 0.072 0.928 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.168 -1.874 8.407 8.882 hybrid contribution -0.202 -1.080 -1.199 1.626 sum 1.966 -2.954 7.208 8.034 Atomic orbital electron populations 1.21646 0.98830 0.98452 0.99287 1.18122 0.92040 0.94391 0.88567 0.95598 1.21367 1.33243 1.07389 0.91088 0.92769 1.25583 0.95974 0.95706 1.01406 1.70039 1.42296 1.20534 1.23627 0.85699 0.77861 0.78870 0.80327 1.19391 1.21353 1.21086 1.21502 1.02141 0.90335 0.99808 1.22424 0.72251 0.86967 0.81130 1.90600 1.53816 1.73757 1.25952 1.84866 1.75715 1.31286 1.38492 1.23252 0.88986 1.03080 1.01609 1.21886 1.00564 0.95358 0.91507 1.21354 1.01639 0.91031 1.02552 1.21296 1.01289 0.99590 0.92963 0.93223 0.95425 0.95770 0.93405 0.73063 0.88157 0.87672 0.92780 0.89468 0.92842 0.92591 0.90580 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.96 8.84 71.98 0.64 -5.33 16 2 C 0.09 4.17 1.59 -11.54 -0.02 4.16 16 3 H 0.03 1.34 6.37 -2.39 -0.02 1.32 16 4 C -0.49 -26.04 7.41 25.60 0.19 -25.85 16 5 H 0.05 2.89 6.98 -2.91 -0.02 2.87 16 6 C 0.01 0.57 5.31 84.65 0.45 1.02 16 7 N -0.92 -52.55 11.71 21.45 0.25 -52.30 16 8 Si 0.95 43.60 29.54 68.60 2.03 45.63 16 9 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 10 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 C -0.14 -5.54 1.55 -52.93 -0.08 -5.62 16 13 C 0.53 21.01 7.03 71.24 0.50 21.51 16 14 O -0.55 -21.75 13.92 21.98 0.31 -21.44 16 15 O -0.49 -18.72 10.40 -51.36 -0.53 -19.25 16 16 C -0.13 -4.63 9.25 30.59 0.28 -4.34 16 17 C -0.09 -3.13 2.70 -52.18 -0.14 -3.27 16 18 C -0.11 -3.34 8.69 71.98 0.63 -2.71 16 19 C -0.09 -2.85 8.10 71.98 0.58 -2.27 16 20 H 0.05 2.64 6.44 -2.39 -0.02 2.62 16 21 H 0.03 1.28 6.58 -2.38 -0.02 1.26 16 22 H 0.02 1.03 7.70 -2.39 -0.02 1.01 16 23 H 0.26 14.03 8.31 -92.70 -0.77 13.26 16 24 H 0.41 10.79 9.10 -74.05 -0.67 10.11 16 25 H 0.10 3.20 8.05 -2.39 -0.02 3.18 16 26 H 0.10 3.67 8.08 -2.39 -0.02 3.65 16 27 H 0.05 1.74 7.70 -2.38 -0.02 1.72 16 28 H 0.09 2.08 8.01 -2.38 -0.02 2.06 16 29 H 0.05 1.76 6.96 -2.39 -0.02 1.74 16 30 H 0.06 1.75 6.87 -2.39 -0.02 1.74 16 31 H 0.08 1.82 7.99 -2.38 -0.02 1.81 16 32 H 0.05 1.54 7.43 -2.39 -0.02 1.52 16 Total: -1.00 -61.84 259.92 5.52 -56.32 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.45 Total: 13.76 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: 3.03 Total: -22.71 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: 0.25 Total: -52.30 kcal Atomic # 8 Polarization: -40.47 SS G_CDS: -0.23 Total: -40.69 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -61.84 5.52 -56.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642824055.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.102 kcal (2) G-P(sol) polarization free energy of solvation -61.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds