Wall clock time and date at job start Mon Mar 30 2020 02:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08989 * 109.47287 * 2 1 4 4 C 1.50703 * 109.46956 * 120.00819 * 2 1 3 5 5 H 1.07998 * 120.00060 * 114.86744 * 4 2 1 6 6 C 1.37879 * 119.99359 * 294.86894 * 4 2 1 7 7 N 1.31507 * 120.00255 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99463 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47111 * 90.00146 * 8 6 4 10 10 H 1.48503 * 109.46668 * 209.99806 * 8 6 4 11 11 H 1.48495 * 109.46916 * 329.99816 * 8 6 4 12 12 C 1.53007 * 109.46733 * 240.00159 * 2 1 3 13 13 C 1.50700 * 115.54832 * 294.04093 * 12 2 1 14 14 O 1.20833 * 119.99797 * 246.94247 * 13 12 2 15 15 O 1.34226 * 120.00555 * 66.94361 * 13 12 2 16 16 C 1.52997 * 117.49612 * 79.70724 * 12 2 1 17 17 C 1.52994 * 117.50031 * 148.36929 * 12 2 1 18 18 C 1.53005 * 117.49378 * 0.02562 * 17 12 2 19 19 C 1.52998 * 117.50150 * 145.02070 * 17 12 2 20 20 H 1.09002 * 109.47232 * 66.31602 * 1 2 3 21 21 H 1.08992 * 109.47537 * 186.32362 * 1 2 3 22 22 H 1.08999 * 109.46661 * 306.32337 * 1 2 3 23 23 H 0.97010 * 119.99992 * 180.02562 * 7 6 4 24 24 H 0.96701 * 117.00127 * 179.97438 * 15 13 12 25 25 H 1.09008 * 117.49659 * 214.97774 * 16 12 2 26 26 H 1.08996 * 117.50555 * 359.97438 * 16 12 2 27 27 H 1.08995 * 109.47305 * 61.60043 * 18 17 12 28 28 H 1.08999 * 109.46839 * 181.59951 * 18 17 12 29 29 H 1.09000 * 109.47091 * 301.58954 * 18 17 12 30 30 H 1.09001 * 109.47062 * 59.99828 * 19 17 12 31 31 H 1.09003 * 109.47229 * 180.02562 * 19 17 12 32 32 H 1.08998 * 109.47062 * 299.99775 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.5831 -1.6345 1.1334 6 6 1.7886 -0.1811 2.4799 7 7 1.1183 0.9441 2.5980 8 14 2.4118 -1.0616 4.0050 9 1 3.7743 -0.5727 4.3368 10 1 1.4973 -0.7883 5.1427 11 1 2.4593 -2.5233 3.7480 12 6 2.0400 -0.7213 -1.2493 13 6 1.7343 -2.1953 -1.3191 14 8 2.6320 -3.0019 -1.2590 15 8 0.4650 -2.6123 -1.4480 16 6 2.0467 0.0618 -2.5637 17 6 3.3648 -0.2454 -1.8485 18 6 4.0787 0.9150 -1.1521 19 6 4.2778 -1.3023 -2.4732 20 1 -0.3634 0.4128 -0.9411 21 1 -0.3634 -1.0213 0.1132 22 1 -0.3632 0.6087 0.8280 23 1 0.9471 1.3168 3.4771 24 1 0.3186 -3.5673 -1.4888 25 1 1.8306 -0.4894 -3.4790 26 1 1.6876 1.0906 -2.5386 27 1 4.3367 0.6242 -0.1338 28 1 4.9874 1.1639 -1.7002 29 1 3.4206 1.7835 -1.1264 30 1 3.7537 -1.7981 -3.2903 31 1 5.1789 -0.8234 -2.8564 32 1 4.5515 -2.0385 -1.7174 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642824056.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:49 Heat of formation + Delta-G solvation = -83.832162 kcal Electronic energy + Delta-G solvation = -15068.787931 eV Core-core repulsion = 12608.713924 eV Total energy + Delta-G solvation = -2460.074007 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.06205 -37.54069 -35.33037 -33.55323 -30.66312 -28.25703 -26.93852 -25.16417 -24.00019 -21.61981 -19.62207 -18.01233 -17.23654 -16.42121 -15.29898 -14.82118 -14.26045 -13.67440 -13.56665 -13.16029 -12.53822 -12.21305 -12.15212 -11.72516 -11.43905 -11.23102 -10.97974 -10.90192 -10.75540 -10.67102 -10.47635 -10.24076 -10.06660 -9.46055 -9.23872 -8.83656 -8.58495 -8.34938 -6.01443 -4.05101 2.98971 3.31536 3.38019 3.43470 3.72724 4.29122 4.46169 5.20686 5.33735 5.38335 5.50387 5.65529 6.10138 6.10592 6.21310 6.31885 6.46177 6.47333 6.52154 6.63449 6.81212 6.93791 6.99181 7.18058 7.22350 7.28647 7.70471 7.92709 8.04101 8.38668 8.67066 8.97880 9.59408 11.06390 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.028792 B = 0.012457 C = 0.011860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.270533 B = 2247.188596 C = 2360.231107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.084 3.916 3 H 0.049 0.951 4 C -0.511 4.511 5 H 0.055 0.945 6 C 0.066 3.934 7 N -0.889 5.889 8 Si 0.888 3.112 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 C -0.093 4.093 13 C 0.534 3.466 14 O -0.527 6.527 15 O -0.509 6.509 16 C -0.169 4.169 17 C -0.094 4.094 18 C -0.107 4.107 19 C -0.112 4.112 20 H 0.011 0.989 21 H 0.037 0.963 22 H 0.071 0.929 23 H 0.260 0.740 24 H 0.394 0.606 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.044 0.956 31 H 0.050 0.950 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.296 -1.732 -8.234 8.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.066 3.934 3 H 0.067 0.933 4 C -0.550 4.550 5 H 0.073 0.927 6 C -0.136 4.136 7 N -0.528 5.528 8 Si 0.716 3.284 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.200 1.200 12 C -0.094 4.094 13 C 0.378 3.622 14 O -0.416 6.416 15 O -0.319 6.319 16 C -0.206 4.206 17 C -0.094 4.094 18 C -0.164 4.164 19 C -0.169 4.169 20 H 0.030 0.970 21 H 0.056 0.944 22 H 0.089 0.911 23 H 0.070 0.930 24 H 0.251 0.749 25 H 0.104 0.896 26 H 0.119 0.881 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.538 -1.394 -8.058 8.321 hybrid contribution 0.088 -1.183 0.923 1.503 sum 1.625 -2.576 -7.136 7.759 Atomic orbital electron populations 1.21760 0.97964 1.00490 0.98703 1.18343 0.92607 0.95303 0.87160 0.93303 1.21093 1.34904 1.08531 0.90433 0.92691 1.24885 0.95013 0.94898 0.98797 1.69916 1.40175 1.19154 1.23568 0.86648 0.78713 0.80233 0.82800 1.20609 1.21258 1.19986 1.21514 1.01905 0.87805 0.98226 1.22449 0.79172 0.91096 0.69490 1.90590 1.47343 1.56452 1.47197 1.84653 1.31322 1.30927 1.85004 1.23405 1.01171 1.01316 0.94667 1.21587 0.88712 0.98593 1.00523 1.21286 0.98626 0.95567 1.00913 1.21414 0.97816 0.97516 1.00176 0.97029 0.94384 0.91060 0.92999 0.74912 0.89637 0.88111 0.90706 0.93248 0.92270 0.93653 0.93053 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.54 37.16 0.32 -2.82 16 2 C 0.08 2.05 1.67 -91.77 -0.15 1.89 16 3 H 0.05 1.25 6.46 -51.93 -0.34 0.92 16 4 C -0.51 -13.95 8.10 -34.44 -0.28 -14.22 16 5 H 0.05 1.57 7.26 -52.49 -0.38 1.19 16 6 C 0.07 1.80 5.33 -17.82 -0.09 1.71 16 7 N -0.89 -25.04 11.77 55.43 0.65 -24.39 16 8 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 12 C -0.09 -1.97 1.52 -155.66 -0.24 -2.20 16 13 C 0.53 11.24 6.20 36.01 0.22 11.47 16 14 O -0.53 -11.82 15.03 -18.76 -0.28 -12.10 16 15 O -0.51 -9.23 11.90 -39.25 -0.47 -9.69 16 16 C -0.17 -2.94 9.25 -26.69 -0.25 -3.19 16 17 C -0.09 -1.74 2.70 -154.47 -0.42 -2.16 16 18 C -0.11 -1.90 8.60 37.16 0.32 -1.58 16 19 C -0.11 -1.92 8.26 37.16 0.31 -1.61 16 20 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 21 H 0.04 0.90 6.85 -51.93 -0.36 0.55 16 22 H 0.07 1.85 6.65 -51.93 -0.35 1.50 16 23 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 24 H 0.39 5.09 9.10 45.56 0.41 5.51 16 25 H 0.09 1.34 8.05 -51.92 -0.42 0.93 16 26 H 0.10 1.67 8.06 -51.93 -0.42 1.25 16 27 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 28 H 0.05 0.73 7.95 -51.93 -0.41 0.32 16 29 H 0.06 1.04 7.14 -51.93 -0.37 0.67 16 30 H 0.04 0.74 7.88 -51.93 -0.41 0.33 16 31 H 0.05 0.74 7.94 -51.93 -0.41 0.33 16 32 H 0.08 1.46 6.79 -51.93 -0.35 1.11 16 LS Contribution 264.47 15.07 3.99 3.99 Total: -1.00 -30.17 264.47 -5.17 -35.34 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -3.78 Total: 2.99 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -0.26 Total: -12.72 kcal Atomic # 7 Polarization: -25.04 SS G_CDS: 0.65 Total: -24.39 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.75 Total: -21.79 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.17 -5.17 -35.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642824056.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.493 kcal (2) G-P(sol) polarization free energy of solvation -30.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds