Wall clock time and date at job start Mon Mar 30 2020 02:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08989 * 109.47287 * 2 1 4 4 C 1.50703 * 109.46956 * 120.00819 * 2 1 3 5 5 H 1.07998 * 120.00060 * 114.86744 * 4 2 1 6 6 C 1.37879 * 119.99359 * 294.86894 * 4 2 1 7 7 N 1.31507 * 120.00255 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99463 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47111 * 90.00146 * 8 6 4 10 10 H 1.48503 * 109.46668 * 209.99806 * 8 6 4 11 11 H 1.48495 * 109.46916 * 329.99816 * 8 6 4 12 12 C 1.53007 * 109.46733 * 240.00159 * 2 1 3 13 13 C 1.50700 * 115.54832 * 294.04093 * 12 2 1 14 14 O 1.20833 * 119.99797 * 246.94247 * 13 12 2 15 15 O 1.34226 * 120.00555 * 66.94361 * 13 12 2 16 16 C 1.52997 * 117.49612 * 79.70724 * 12 2 1 17 17 C 1.52994 * 117.50031 * 148.36929 * 12 2 1 18 18 C 1.53005 * 117.49378 * 0.02562 * 17 12 2 19 19 C 1.52998 * 117.50150 * 145.02070 * 17 12 2 20 20 H 1.09002 * 109.47232 * 66.31602 * 1 2 3 21 21 H 1.08992 * 109.47537 * 186.32362 * 1 2 3 22 22 H 1.08999 * 109.46661 * 306.32337 * 1 2 3 23 23 H 0.97010 * 119.99992 * 180.02562 * 7 6 4 24 24 H 0.96701 * 117.00127 * 179.97438 * 15 13 12 25 25 H 1.09008 * 117.49659 * 214.97774 * 16 12 2 26 26 H 1.08996 * 117.50555 * 359.97438 * 16 12 2 27 27 H 1.08995 * 109.47305 * 61.60043 * 18 17 12 28 28 H 1.08999 * 109.46839 * 181.59951 * 18 17 12 29 29 H 1.09000 * 109.47091 * 301.58954 * 18 17 12 30 30 H 1.09001 * 109.47062 * 59.99828 * 19 17 12 31 31 H 1.09003 * 109.47229 * 180.02562 * 19 17 12 32 32 H 1.08998 * 109.47062 * 299.99775 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.5831 -1.6345 1.1334 6 6 1.7886 -0.1811 2.4799 7 7 1.1183 0.9441 2.5980 8 14 2.4118 -1.0616 4.0050 9 1 3.7743 -0.5727 4.3368 10 1 1.4973 -0.7883 5.1427 11 1 2.4593 -2.5233 3.7480 12 6 2.0400 -0.7213 -1.2493 13 6 1.7343 -2.1953 -1.3191 14 8 2.6320 -3.0019 -1.2590 15 8 0.4650 -2.6123 -1.4480 16 6 2.0467 0.0618 -2.5637 17 6 3.3648 -0.2454 -1.8485 18 6 4.0787 0.9150 -1.1521 19 6 4.2778 -1.3023 -2.4732 20 1 -0.3634 0.4128 -0.9411 21 1 -0.3634 -1.0213 0.1132 22 1 -0.3632 0.6087 0.8280 23 1 0.9471 1.3168 3.4771 24 1 0.3186 -3.5673 -1.4888 25 1 1.8306 -0.4894 -3.4790 26 1 1.6876 1.0906 -2.5386 27 1 4.3367 0.6242 -0.1338 28 1 4.9874 1.1639 -1.7002 29 1 3.4206 1.7835 -1.1264 30 1 3.7537 -1.7981 -3.2903 31 1 5.1789 -0.8234 -2.8564 32 1 4.5515 -2.0385 -1.7174 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642824056.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:49 Heat of formation + Delta-G solvation = -102.309017 kcal Electronic energy + Delta-G solvation = -15069.589147 eV Core-core repulsion = 12608.713924 eV Total energy + Delta-G solvation = -2460.875223 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.62612 -39.06549 -36.90429 -35.50566 -32.54667 -29.80895 -28.33012 -27.19209 -25.61027 -23.39040 -21.18628 -19.52937 -18.87165 -18.37580 -17.08013 -16.50264 -16.06588 -15.19475 -15.09342 -14.60402 -14.42474 -13.90481 -13.65922 -13.40150 -13.03368 -12.88424 -12.81391 -12.63489 -12.40367 -12.31581 -12.13880 -12.01099 -11.91004 -11.23167 -11.01072 -10.52750 -10.42080 -10.22636 -8.11739 -6.20473 1.35713 1.38389 1.39598 1.47936 2.29092 2.41854 2.81928 3.19731 3.76912 3.92932 4.08654 4.26470 4.62480 4.74575 4.85306 4.88442 5.00257 5.05065 5.07768 5.10945 5.12767 5.33685 5.36823 5.40814 5.58355 5.61403 5.75082 5.94956 6.04955 6.35238 6.86372 7.20910 7.46075 8.94839 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.028792 B = 0.012457 C = 0.011860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.270533 B = 2247.188596 C = 2360.231107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.089 3.911 3 H 0.031 0.969 4 C -0.520 4.520 5 H 0.034 0.966 6 C 0.023 3.977 7 N -0.911 5.911 8 Si 0.939 3.061 9 H -0.274 1.274 10 H -0.279 1.279 11 H -0.280 1.280 12 C -0.130 4.130 13 C 0.533 3.467 14 O -0.548 6.548 15 O -0.507 6.507 16 C -0.139 4.139 17 C -0.097 4.097 18 C -0.104 4.104 19 C -0.106 4.106 20 H 0.035 0.965 21 H 0.031 0.969 22 H 0.044 0.956 23 H 0.262 0.738 24 H 0.416 0.584 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.042 0.958 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.524 -1.752 -9.471 9.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.070 3.930 3 H 0.049 0.951 4 C -0.558 4.558 5 H 0.053 0.947 6 C -0.176 4.176 7 N -0.550 5.550 8 Si 0.765 3.235 9 H -0.200 1.200 10 H -0.205 1.205 11 H -0.205 1.205 12 C -0.131 4.131 13 C 0.378 3.622 14 O -0.439 6.439 15 O -0.319 6.319 16 C -0.176 4.176 17 C -0.098 4.098 18 C -0.160 4.160 19 C -0.163 4.163 20 H 0.054 0.946 21 H 0.050 0.950 22 H 0.063 0.937 23 H 0.071 0.929 24 H 0.276 0.724 25 H 0.127 0.873 26 H 0.129 0.871 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.750 -1.425 -9.299 9.569 hybrid contribution -0.011 -1.197 1.287 1.758 sum 1.739 -2.622 -8.012 8.607 Atomic orbital electron populations 1.21599 0.97778 0.99603 0.98815 1.18123 0.92644 0.94351 0.87844 0.95057 1.21262 1.34547 1.07920 0.92089 0.94726 1.25495 0.95377 0.95594 1.01127 1.69999 1.40933 1.20002 1.24083 0.85854 0.78555 0.78853 0.80202 1.20014 1.20479 1.20522 1.21389 1.04827 0.88195 0.98725 1.22464 0.79582 0.91061 0.69070 1.90579 1.48099 1.56985 1.48265 1.84586 1.29833 1.33125 1.84358 1.23494 0.99210 1.01439 0.93472 1.21780 0.88844 0.98832 1.00299 1.21252 1.00023 0.95245 0.99530 1.21356 0.98774 0.96673 0.99481 0.94634 0.95029 0.93707 0.92913 0.72352 0.87269 0.87056 0.93879 0.90000 0.92532 0.92898 0.90235 0.93199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.54 71.98 0.62 -5.06 16 2 C 0.09 4.31 1.67 -11.54 -0.02 4.29 16 3 H 0.03 1.62 6.46 -2.39 -0.02 1.61 16 4 C -0.52 -28.71 8.10 25.60 0.21 -28.50 16 5 H 0.03 2.01 7.26 -2.91 -0.02 1.99 16 6 C 0.02 1.29 5.33 84.66 0.45 1.75 16 7 N -0.91 -51.73 11.77 21.45 0.25 -51.48 16 8 Si 0.94 44.60 29.54 68.60 2.03 46.63 16 9 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 12 C -0.13 -5.33 1.52 -52.93 -0.08 -5.41 16 13 C 0.53 21.88 6.20 71.24 0.44 22.32 16 14 O -0.55 -24.29 15.03 21.94 0.33 -23.96 16 15 O -0.51 -17.53 11.90 -51.38 -0.61 -18.14 16 16 C -0.14 -4.46 9.25 30.62 0.28 -4.18 16 17 C -0.10 -3.44 2.70 -52.16 -0.14 -3.58 16 18 C -0.10 -3.56 8.60 71.98 0.62 -2.94 16 19 C -0.11 -3.39 8.26 71.98 0.59 -2.79 16 20 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.03 1.48 6.85 -2.39 -0.02 1.46 16 22 H 0.04 2.32 6.65 -2.39 -0.02 2.31 16 23 H 0.26 14.19 8.31 -92.70 -0.77 13.42 16 24 H 0.42 10.00 9.10 -74.06 -0.67 9.33 16 25 H 0.11 2.99 8.05 -2.38 -0.02 2.97 16 26 H 0.11 3.33 8.06 -2.39 -0.02 3.31 16 27 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.08 2.23 7.95 -2.39 -0.02 2.21 16 29 H 0.06 1.93 7.14 -2.39 -0.02 1.91 16 30 H 0.05 1.58 7.88 -2.39 -0.02 1.56 16 31 H 0.08 2.05 7.94 -2.39 -0.02 2.04 16 32 H 0.05 1.86 6.79 -2.39 -0.02 1.85 16 Total: -1.00 -64.23 264.47 5.41 -58.82 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.44 Total: 12.24 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 2.97 Total: -24.10 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: 0.25 Total: -51.48 kcal Atomic # 8 Polarization: -41.82 SS G_CDS: -0.28 Total: -42.10 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -64.23 5.41 -58.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642824056.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.493 kcal (2) G-P(sol) polarization free energy of solvation -64.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds