Wall clock time and date at job start Mon Mar 30 2020 02:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46792 * 2 1 4 4 C 1.50698 * 109.47043 * 240.00311 * 2 1 3 5 5 H 1.07994 * 120.00118 * 242.33502 * 4 2 1 6 6 C 1.37882 * 119.99832 * 62.33696 * 4 2 1 7 7 N 1.31509 * 120.00302 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99684 * 180.27628 * 6 4 2 9 9 H 1.48505 * 109.46831 * 179.72254 * 8 6 4 10 10 H 1.48495 * 109.47087 * 299.71795 * 8 6 4 11 11 H 1.48500 * 109.47490 * 59.72564 * 8 6 4 12 12 C 1.52997 * 109.47367 * 120.00231 * 2 1 3 13 13 C 1.50703 * 115.54850 * 79.84886 * 12 2 1 14 14 O 1.20825 * 120.00181 * 113.98964 * 13 12 2 15 15 O 1.34231 * 120.00089 * 293.98695 * 13 12 2 16 16 C 1.53000 * 117.50222 * 294.17980 * 12 2 1 17 17 C 1.52995 * 117.50060 * 225.55573 * 12 2 1 18 18 C 1.53000 * 117.50189 * 214.98033 * 17 12 2 19 19 C 1.53005 * 117.49733 * 0.02562 * 17 12 2 20 20 H 1.09001 * 109.47528 * 62.94451 * 1 2 3 21 21 H 1.09005 * 109.47105 * 182.94529 * 1 2 3 22 22 H 1.09001 * 109.46914 * 302.94227 * 1 2 3 23 23 H 0.97001 * 120.00304 * 180.02562 * 7 6 4 24 24 H 0.96704 * 116.99851 * 180.02562 * 15 13 12 25 25 H 1.09011 * 117.49352 * 359.97438 * 16 12 2 26 26 H 1.08995 * 117.50292 * 145.01579 * 16 12 2 27 27 H 1.08999 * 109.47174 * 60.00074 * 18 17 12 28 28 H 1.09000 * 109.47423 * 180.02562 * 18 17 12 29 29 H 1.08997 * 109.47033 * 299.99834 * 18 17 12 30 30 H 1.08992 * 109.47190 * 64.33571 * 19 17 12 31 31 H 1.09004 * 109.46861 * 184.33652 * 19 17 12 32 32 H 1.08995 * 109.46809 * 304.33083 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6217 -1.6099 -1.1319 6 6 1.7394 -0.2117 -2.4822 7 7 1.0213 0.8834 -2.6023 8 14 2.3556 -1.0965 -4.0076 9 1 1.9031 -0.3672 -5.2195 10 1 3.8395 -1.1466 -3.9853 11 1 1.8138 -2.4790 -4.0308 12 6 2.0401 -0.7213 1.2492 13 6 2.0308 -2.2267 1.1798 14 8 3.0727 -2.8384 1.1904 15 8 0.8650 -2.8880 1.1062 16 6 1.7515 -0.0749 2.6056 17 6 3.1715 -0.0569 2.0361 18 6 4.2075 -0.9716 2.6925 19 6 3.7059 1.2783 1.5139 20 1 -0.3634 0.4674 -0.9152 21 1 -0.3633 -1.0264 0.0528 22 1 -0.3633 0.5588 0.8624 23 1 0.8149 1.2340 -3.4829 24 1 0.9097 -3.8531 1.0640 25 1 1.1986 0.8646 2.6079 26 1 1.5553 -0.7383 3.4478 27 1 4.7017 -1.5692 1.9266 28 1 4.9478 -0.3659 3.2152 29 1 3.7108 -1.6314 3.4038 30 1 2.9192 2.0308 1.5683 31 1 4.5531 1.5937 2.1229 32 1 4.0261 1.1616 0.4787 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642824057.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:51 Heat of formation + Delta-G solvation = -82.783015 kcal Electronic energy + Delta-G solvation = -15061.929238 eV Core-core repulsion = 12601.900726 eV Total energy + Delta-G solvation = -2460.028512 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.05908 -37.55109 -35.29223 -33.59762 -30.63193 -28.25422 -26.95631 -25.30220 -23.96037 -21.61564 -19.57334 -18.00728 -17.21144 -16.45272 -15.34583 -14.74103 -14.25359 -13.69328 -13.60934 -13.21796 -12.52954 -12.21568 -12.12228 -11.78732 -11.48262 -11.24482 -10.93812 -10.88110 -10.75795 -10.67622 -10.47041 -10.25143 -10.07670 -9.42219 -9.25541 -8.83529 -8.63869 -8.33290 -6.01520 -4.06668 3.02251 3.32854 3.36477 3.41050 3.75235 4.28681 4.44207 5.18726 5.32766 5.37576 5.48920 5.62352 6.09079 6.10119 6.19235 6.31099 6.42197 6.43719 6.48747 6.65036 6.77063 6.91219 6.93622 7.20012 7.23959 7.30221 7.69533 7.92517 8.08262 8.38273 8.70418 8.94798 9.57897 11.04979 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.029485 B = 0.012405 C = 0.011646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.414728 B = 2256.529036 C = 2403.720175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.084 3.916 3 H 0.049 0.951 4 C -0.513 4.513 5 H 0.052 0.948 6 C 0.066 3.934 7 N -0.888 5.888 8 Si 0.889 3.111 9 H -0.287 1.287 10 H -0.277 1.277 11 H -0.278 1.278 12 C -0.094 4.094 13 C 0.538 3.462 14 O -0.530 6.530 15 O -0.508 6.508 16 C -0.167 4.167 17 C -0.098 4.098 18 C -0.112 4.112 19 C -0.109 4.109 20 H 0.080 0.920 21 H 0.035 0.965 22 H 0.009 0.991 23 H 0.261 0.739 24 H 0.394 0.606 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.101 -1.694 8.213 8.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.065 3.935 3 H 0.067 0.933 4 C -0.551 4.551 5 H 0.071 0.929 6 C -0.136 4.136 7 N -0.527 5.527 8 Si 0.717 3.283 9 H -0.212 1.212 10 H -0.202 1.202 11 H -0.203 1.203 12 C -0.095 4.095 13 C 0.382 3.618 14 O -0.420 6.420 15 O -0.317 6.317 16 C -0.204 4.204 17 C -0.098 4.098 18 C -0.169 4.169 19 C -0.166 4.166 20 H 0.098 0.902 21 H 0.055 0.945 22 H 0.028 0.972 23 H 0.071 0.929 24 H 0.251 0.749 25 H 0.119 0.881 26 H 0.104 0.896 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.282 -1.297 8.092 8.295 hybrid contribution 0.241 -1.233 -0.982 1.595 sum 1.523 -2.530 7.110 7.698 Atomic orbital electron populations 1.21797 0.97921 0.99473 1.00205 1.18338 0.92693 0.95355 0.87083 0.93336 1.21069 1.32954 1.10577 0.90504 0.92931 1.24875 0.94964 0.94926 0.98796 1.69879 1.38118 1.21145 1.23570 0.86698 0.79366 0.79831 0.82409 1.21230 1.20223 1.20344 1.21547 1.04301 0.86835 0.96794 1.22358 0.80190 0.89982 0.69264 1.90585 1.33804 1.69930 1.47676 1.84637 1.36368 1.25403 1.85310 1.23382 0.98744 1.02691 0.95543 1.21621 0.89663 0.97733 1.00813 1.21419 0.97522 0.97894 1.00030 1.21316 1.00011 0.93465 1.01781 0.90171 0.94539 0.97196 0.92897 0.74925 0.88067 0.89608 0.90549 0.93082 0.93594 0.92324 0.92999 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.88 37.16 0.33 -2.92 16 2 C 0.08 2.04 1.99 -91.77 -0.18 1.86 16 3 H 0.05 1.24 6.12 -51.93 -0.32 0.93 16 4 C -0.51 -14.07 8.06 -34.44 -0.28 -14.35 16 5 H 0.05 1.50 6.74 -52.49 -0.35 1.15 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 7 N -0.89 -25.00 11.48 55.43 0.64 -24.36 16 8 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 C -0.09 -1.98 1.68 -155.66 -0.26 -2.24 16 13 C 0.54 11.48 5.67 36.01 0.20 11.68 16 14 O -0.53 -11.97 14.97 -18.75 -0.28 -12.25 16 15 O -0.51 -9.48 12.37 -39.26 -0.49 -9.97 16 16 C -0.17 -2.91 8.87 -26.73 -0.24 -3.15 16 17 C -0.10 -1.81 2.70 -154.51 -0.42 -2.22 16 18 C -0.11 -1.90 8.25 37.16 0.31 -1.59 16 19 C -0.11 -1.88 8.39 37.16 0.31 -1.57 16 20 H 0.08 2.10 6.19 -51.93 -0.32 1.78 16 21 H 0.04 0.86 7.06 -51.93 -0.37 0.49 16 22 H 0.01 0.19 7.81 -51.93 -0.41 -0.21 16 23 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 24 H 0.39 5.31 9.10 45.56 0.41 5.72 16 25 H 0.10 1.68 7.90 -51.92 -0.41 1.27 16 26 H 0.09 1.36 8.05 -51.93 -0.42 0.94 16 27 H 0.08 1.45 6.80 -51.93 -0.35 1.10 16 28 H 0.05 0.73 7.89 -51.93 -0.41 0.32 16 29 H 0.04 0.75 7.87 -51.93 -0.41 0.34 16 30 H 0.06 0.98 7.51 -51.93 -0.39 0.59 16 31 H 0.05 0.75 7.86 -51.93 -0.41 0.34 16 32 H 0.07 1.44 7.89 -51.93 -0.41 1.03 16 LS Contribution 262.58 15.07 3.96 3.96 Total: -1.00 -30.23 262.58 -5.20 -35.43 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -3.69 Total: 3.36 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -0.32 Total: -12.78 kcal Atomic # 7 Polarization: -25.00 SS G_CDS: 0.64 Total: -24.36 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.77 Total: -22.22 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.23 -5.20 -35.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642824057.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.351 kcal (2) G-P(sol) polarization free energy of solvation -30.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds