Wall clock time and date at job start Mon Mar 30 2020 02:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46792 * 2 1 4 4 C 1.50698 * 109.47043 * 240.00311 * 2 1 3 5 5 H 1.07994 * 120.00118 * 242.33502 * 4 2 1 6 6 C 1.37882 * 119.99832 * 62.33696 * 4 2 1 7 7 N 1.31509 * 120.00302 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99684 * 180.27628 * 6 4 2 9 9 H 1.48505 * 109.46831 * 179.72254 * 8 6 4 10 10 H 1.48495 * 109.47087 * 299.71795 * 8 6 4 11 11 H 1.48500 * 109.47490 * 59.72564 * 8 6 4 12 12 C 1.52997 * 109.47367 * 120.00231 * 2 1 3 13 13 C 1.50703 * 115.54850 * 79.84886 * 12 2 1 14 14 O 1.20825 * 120.00181 * 113.98964 * 13 12 2 15 15 O 1.34231 * 120.00089 * 293.98695 * 13 12 2 16 16 C 1.53000 * 117.50222 * 294.17980 * 12 2 1 17 17 C 1.52995 * 117.50060 * 225.55573 * 12 2 1 18 18 C 1.53000 * 117.50189 * 214.98033 * 17 12 2 19 19 C 1.53005 * 117.49733 * 0.02562 * 17 12 2 20 20 H 1.09001 * 109.47528 * 62.94451 * 1 2 3 21 21 H 1.09005 * 109.47105 * 182.94529 * 1 2 3 22 22 H 1.09001 * 109.46914 * 302.94227 * 1 2 3 23 23 H 0.97001 * 120.00304 * 180.02562 * 7 6 4 24 24 H 0.96704 * 116.99851 * 180.02562 * 15 13 12 25 25 H 1.09011 * 117.49352 * 359.97438 * 16 12 2 26 26 H 1.08995 * 117.50292 * 145.01579 * 16 12 2 27 27 H 1.08999 * 109.47174 * 60.00074 * 18 17 12 28 28 H 1.09000 * 109.47423 * 180.02562 * 18 17 12 29 29 H 1.08997 * 109.47033 * 299.99834 * 18 17 12 30 30 H 1.08992 * 109.47190 * 64.33571 * 19 17 12 31 31 H 1.09004 * 109.46861 * 184.33652 * 19 17 12 32 32 H 1.08995 * 109.46809 * 304.33083 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6217 -1.6099 -1.1319 6 6 1.7394 -0.2117 -2.4822 7 7 1.0213 0.8834 -2.6023 8 14 2.3556 -1.0965 -4.0076 9 1 1.9031 -0.3672 -5.2195 10 1 3.8395 -1.1466 -3.9853 11 1 1.8138 -2.4790 -4.0308 12 6 2.0401 -0.7213 1.2492 13 6 2.0308 -2.2267 1.1798 14 8 3.0727 -2.8384 1.1904 15 8 0.8650 -2.8880 1.1062 16 6 1.7515 -0.0749 2.6056 17 6 3.1715 -0.0569 2.0361 18 6 4.2075 -0.9716 2.6925 19 6 3.7059 1.2783 1.5139 20 1 -0.3634 0.4674 -0.9152 21 1 -0.3633 -1.0264 0.0528 22 1 -0.3633 0.5588 0.8624 23 1 0.8149 1.2340 -3.4829 24 1 0.9097 -3.8531 1.0640 25 1 1.1986 0.8646 2.6079 26 1 1.5553 -0.7383 3.4478 27 1 4.7017 -1.5692 1.9266 28 1 4.9478 -0.3659 3.2152 29 1 3.7108 -1.6314 3.4038 30 1 2.9192 2.0308 1.5683 31 1 4.5531 1.5937 2.1229 32 1 4.0261 1.1616 0.4787 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642824057.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:50 Heat of formation + Delta-G solvation = -101.357688 kcal Electronic energy + Delta-G solvation = -15062.734696 eV Core-core repulsion = 12601.900726 eV Total energy + Delta-G solvation = -2460.833970 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.63426 -39.08376 -36.89203 -35.54723 -32.50298 -29.79181 -28.32904 -27.29634 -25.61704 -23.37743 -21.14255 -19.52540 -18.87795 -18.39167 -17.14343 -16.42580 -16.07127 -15.24525 -15.11892 -14.63963 -14.39269 -13.85272 -13.67374 -13.44004 -13.06179 -12.88289 -12.80782 -12.60254 -12.37634 -12.31422 -12.13590 -12.01160 -11.93508 -11.20441 -11.02113 -10.50494 -10.43774 -10.24407 -8.11572 -6.21982 1.36771 1.37816 1.40859 1.45846 2.29880 2.41526 2.80693 3.18557 3.76405 3.92796 4.07909 4.25001 4.61360 4.74250 4.85392 4.87724 5.02828 5.03666 5.07462 5.09013 5.12108 5.33969 5.38249 5.38529 5.56049 5.59703 5.75899 5.95048 6.09974 6.35175 6.84126 7.21782 7.44613 8.93446 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.029485 B = 0.012405 C = 0.011646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.414728 B = 2256.529036 C = 2403.720175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.087 3.913 3 H 0.032 0.968 4 C -0.525 4.525 5 H 0.034 0.966 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.939 3.061 9 H -0.278 1.278 10 H -0.277 1.277 11 H -0.277 1.277 12 C -0.132 4.132 13 C 0.536 3.464 14 O -0.551 6.551 15 O -0.508 6.508 16 C -0.138 4.138 17 C -0.099 4.099 18 C -0.106 4.106 19 C -0.106 4.106 20 H 0.051 0.949 21 H 0.032 0.968 22 H 0.034 0.966 23 H 0.262 0.738 24 H 0.416 0.584 25 H 0.112 0.888 26 H 0.108 0.892 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.197 -1.721 9.441 9.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.069 3.931 3 H 0.050 0.950 4 C -0.563 4.563 5 H 0.052 0.948 6 C -0.176 4.176 7 N -0.548 5.548 8 Si 0.765 3.235 9 H -0.203 1.203 10 H -0.203 1.203 11 H -0.202 1.202 12 C -0.133 4.133 13 C 0.381 3.619 14 O -0.442 6.442 15 O -0.320 6.320 16 C -0.175 4.175 17 C -0.099 4.099 18 C -0.163 4.163 19 C -0.163 4.163 20 H 0.070 0.930 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.072 0.928 24 H 0.275 0.725 25 H 0.130 0.870 26 H 0.126 0.874 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.364 -1.340 9.321 9.515 hybrid contribution 0.193 -1.247 -1.350 1.848 sum 1.557 -2.587 7.971 8.524 Atomic orbital electron populations 1.21641 0.97706 0.99209 0.99820 1.18135 0.92778 0.94450 0.87754 0.95010 1.21286 1.32668 1.10161 0.92194 0.94770 1.25496 0.95312 0.95646 1.01142 1.69970 1.38795 1.21962 1.24050 0.85909 0.78721 0.78919 0.79916 1.20278 1.20281 1.20245 1.21423 1.07811 0.86839 0.97198 1.22431 0.80327 0.90267 0.68836 1.90572 1.34517 1.70440 1.48681 1.84576 1.35281 1.27383 1.84734 1.23475 0.97619 1.02782 0.93643 1.21828 0.90347 0.97795 0.99976 1.21367 0.97667 0.97836 0.99408 1.21297 1.01277 0.93294 1.00420 0.92971 0.94923 0.94732 0.92846 0.72450 0.86952 0.87396 0.93160 0.90138 0.93004 0.92054 0.89848 0.93957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.95 8.88 71.98 0.64 -5.31 16 2 C 0.09 4.25 1.99 -11.54 -0.02 4.22 16 3 H 0.03 1.64 6.12 -2.39 -0.01 1.63 16 4 C -0.52 -29.12 8.06 25.60 0.21 -28.91 16 5 H 0.03 1.98 6.74 -2.91 -0.02 1.96 16 6 C 0.02 1.30 5.30 84.66 0.45 1.75 16 7 N -0.91 -51.56 11.48 21.45 0.25 -51.31 16 8 Si 0.94 44.57 29.54 68.60 2.03 46.59 16 9 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 12 C -0.13 -5.41 1.68 -52.93 -0.09 -5.50 16 13 C 0.54 22.39 5.67 71.24 0.40 22.79 16 14 O -0.55 -24.61 14.97 21.97 0.33 -24.28 16 15 O -0.51 -18.30 12.37 -51.42 -0.64 -18.93 16 16 C -0.14 -4.43 8.87 30.59 0.27 -4.16 16 17 C -0.10 -3.47 2.70 -52.18 -0.14 -3.61 16 18 C -0.11 -3.36 8.25 71.98 0.59 -2.76 16 19 C -0.11 -3.51 8.39 71.98 0.60 -2.91 16 20 H 0.05 2.74 6.19 -2.39 -0.01 2.72 16 21 H 0.03 1.51 7.06 -2.38 -0.02 1.49 16 22 H 0.03 1.40 7.81 -2.39 -0.02 1.39 16 23 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 24 H 0.42 10.57 9.10 -74.05 -0.67 9.90 16 25 H 0.11 3.34 7.90 -2.38 -0.02 3.33 16 26 H 0.11 2.99 8.05 -2.39 -0.02 2.97 16 27 H 0.05 1.86 6.80 -2.39 -0.02 1.85 16 28 H 0.08 2.04 7.89 -2.39 -0.02 2.02 16 29 H 0.05 1.56 7.87 -2.39 -0.02 1.54 16 30 H 0.06 1.96 7.51 -2.39 -0.02 1.94 16 31 H 0.08 2.19 7.86 -2.39 -0.02 2.17 16 32 H 0.04 1.65 7.89 -2.39 -0.02 1.63 16 Total: -1.00 -64.30 262.58 5.32 -58.98 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.44 Total: 13.35 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: 2.92 Total: -24.39 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: 0.25 Total: -51.31 kcal Atomic # 8 Polarization: -42.91 SS G_CDS: -0.31 Total: -43.21 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -64.30 5.32 -58.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642824057.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.380 kcal (2) G-P(sol) polarization free energy of solvation -64.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds