Wall clock time and date at job start Mon Mar 30 2020 02:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 119.99804 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99941 * 3 2 1 5 5 H 1.48503 * 109.47261 * 120.00122 * 3 2 1 6 6 H 1.48500 * 109.47454 * 0.02562 * 3 2 1 7 7 C 1.38950 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99613 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99824 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99695 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00009 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00201 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47342 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.45945 * 305.01841 * 13 12 10 15 15 C 1.53036 * 109.46185 * 185.05551 * 13 12 10 16 16 C 1.53121 * 109.27949 * 180.80171 * 15 13 12 17 17 C 1.53120 * 109.15669 * 57.65334 * 16 15 13 18 18 C 1.53035 * 109.28222 * 302.34415 * 17 16 15 19 19 N 1.46837 * 109.46630 * 65.00189 * 13 12 10 20 20 H 0.97001 * 119.99677 * 179.97438 * 1 2 3 21 21 H 0.96991 * 120.00558 * 0.02562 * 9 7 2 22 22 H 1.09002 * 109.47210 * 300.00401 * 12 10 9 23 23 H 1.09001 * 109.46665 * 60.00142 * 12 10 9 24 24 H 1.08999 * 109.50593 * 300.74274 * 15 13 12 25 25 H 1.09004 * 109.50591 * 60.86117 * 15 13 12 26 26 H 1.09001 * 109.52213 * 297.75376 * 16 15 13 27 27 H 1.08997 * 109.57284 * 177.58757 * 16 15 13 28 28 H 1.09006 * 109.50106 * 182.40462 * 17 16 15 29 29 H 1.08998 * 109.53402 * 62.31056 * 17 16 15 30 30 H 1.09003 * 109.46420 * 299.17016 * 18 17 16 31 31 H 1.08996 * 109.46635 * 179.19238 * 18 17 16 32 32 H 1.00907 * 111.00218 * 305.85907 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 3.1018 1.6965 1.2125 6 1 1.2831 2.7465 0.0006 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 6 2.2381 -6.0258 -0.0004 14 1 2.9230 -5.9186 -0.8415 15 6 1.4770 -7.3474 -0.1281 16 6 2.4743 -8.5091 -0.1068 17 6 3.2879 -8.4492 1.1890 18 6 3.9965 -7.0957 1.2785 19 7 2.9998 -6.0176 1.2550 20 1 -0.4850 -0.8401 -0.0004 21 1 0.3534 -2.3906 -0.0005 22 1 0.6168 -4.9209 0.8886 23 1 0.6176 -4.9204 -0.8914 24 1 0.7820 -7.4491 0.7053 25 1 0.9241 -7.3597 -1.0674 26 1 3.1451 -8.4291 -0.9621 27 1 1.9343 -9.4548 -0.1544 28 1 4.0289 -9.2486 1.1907 29 1 2.6219 -8.5685 2.0435 30 1 4.6732 -6.9832 0.4314 31 1 4.5653 -7.0442 2.2069 32 1 3.4344 -5.1199 1.4084 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642857669.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:28 Heat of formation + Delta-G solvation = -59.905894 kcal Electronic energy + Delta-G solvation = -14267.214348 eV Core-core repulsion = 11840.470613 eV Total energy + Delta-G solvation = -2426.743735 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.09809 -37.57024 -34.37624 -32.28008 -31.61290 -30.97871 -27.46088 -24.41592 -23.27941 -21.76776 -19.58413 -19.32047 -17.88622 -16.23852 -15.94426 -15.11209 -14.67444 -14.10443 -13.74135 -13.72103 -13.49680 -13.11630 -12.81869 -12.09446 -11.87810 -11.39607 -11.21106 -10.95046 -10.76240 -10.68782 -10.30393 -10.20045 -10.17719 -9.86310 -9.55369 -8.44050 -8.09101 -7.95753 -6.75780 -3.88918 3.30793 3.34751 3.55162 3.85583 4.25671 4.54667 4.75352 4.97433 5.03724 5.13858 5.26442 5.45014 5.50628 5.62588 5.74511 5.83195 5.89378 6.00553 6.03698 6.08153 6.14342 6.23973 6.30031 6.35941 6.58645 7.47493 7.78252 7.90678 8.08959 8.59578 8.78933 9.47851 9.86975 10.67612 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.071106 B = 0.006401 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.681427 B = 4373.114946 C = 4632.926191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.009 4.009 3 Si 1.092 2.908 4 H -0.284 1.284 5 H -0.284 1.284 6 H -0.279 1.279 7 C -0.385 4.385 8 H 0.099 0.901 9 N -0.572 5.572 10 C 0.444 3.556 11 O -0.597 6.597 12 C -0.129 4.129 13 C 0.110 3.890 14 H 0.042 0.958 15 C -0.114 4.114 16 C -0.119 4.119 17 C -0.117 4.117 18 C 0.059 3.941 19 N -0.687 5.687 20 H 0.262 0.738 21 H 0.377 0.623 22 H 0.085 0.915 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.025 0.975 31 H 0.068 0.932 32 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.683 -12.795 0.484 12.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.212 4.212 3 Si 0.918 3.082 4 H -0.211 1.211 5 H -0.210 1.210 6 H -0.204 1.204 7 C -0.514 4.514 8 H 0.116 0.884 9 N -0.208 5.208 10 C 0.231 3.769 11 O -0.483 6.483 12 C -0.170 4.170 13 C 0.000 4.000 14 H 0.060 0.940 15 C -0.152 4.152 16 C -0.157 4.157 17 C -0.155 4.155 18 C -0.071 4.071 19 N -0.324 5.324 20 H 0.073 0.927 21 H 0.210 0.790 22 H 0.103 0.897 23 H 0.098 0.902 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.843 -11.432 0.826 11.609 hybrid contribution 0.228 -1.358 -0.647 1.522 sum 2.071 -12.790 0.178 12.958 Atomic orbital electron populations 1.70897 1.06530 1.29452 1.46981 1.26520 0.96544 1.02680 0.95418 0.83130 0.74434 0.73648 0.77035 1.21054 1.21002 1.20386 1.20551 0.94674 0.84013 1.52151 0.88359 1.41989 1.08266 1.05692 1.64848 1.19921 0.88272 0.84821 0.83889 1.90440 1.14078 1.87233 1.56523 1.21616 0.98891 0.93471 1.03042 1.21049 0.94403 0.92884 0.91689 0.94032 1.21663 0.97916 0.93958 1.01638 1.21552 0.98157 0.98146 0.97853 1.21594 0.99128 0.96544 0.98190 1.21824 0.93322 0.91820 1.00119 1.60455 1.28490 1.08946 1.34514 0.92706 0.79022 0.89674 0.90206 0.91297 0.91942 0.92479 0.92213 0.92249 0.91404 0.95638 0.91386 0.81447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.42 13.68 55.50 0.76 -24.66 16 2 C -0.01 -0.25 5.50 -17.47 -0.10 -0.34 16 3 Si 1.09 24.40 29.92 -169.99 -5.09 19.32 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 7 C -0.38 -10.89 9.68 -14.93 -0.14 -11.04 16 8 H 0.10 2.94 7.16 -52.48 -0.38 2.56 16 9 N -0.57 -14.56 5.28 -10.96 -0.06 -14.62 16 10 C 0.44 10.52 7.49 -10.99 -0.08 10.43 16 11 O -0.60 -15.90 13.77 5.54 0.08 -15.82 16 12 C -0.13 -2.33 5.38 -27.89 -0.15 -2.48 16 13 C 0.11 1.86 2.10 -67.73 -0.14 1.72 16 14 H 0.04 0.79 7.95 -51.93 -0.41 0.37 16 15 C -0.11 -1.52 5.37 -26.65 -0.14 -1.66 16 16 C -0.12 -1.42 6.00 -26.61 -0.16 -1.58 16 17 C -0.12 -1.40 6.09 -26.65 -0.16 -1.57 16 18 C 0.06 0.86 6.55 -3.83 -0.03 0.83 16 19 N -0.69 -11.92 6.50 -106.77 -0.69 -12.61 16 20 H 0.26 7.12 6.77 -40.82 -0.28 6.84 16 21 H 0.38 8.92 6.73 -40.82 -0.27 8.64 16 22 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 23 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.36 7.31 6.52 -39.29 -0.26 7.05 16 LS Contribution 261.21 15.07 3.94 3.94 Total: -1.00 -30.92 261.21 -6.79 -37.71 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -4.62 Total: 12.43 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -1.11 Total: -5.68 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 0.01 Total: -51.89 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: 0.08 Total: -15.82 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -5.09 Total: 19.32 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.92 -6.79 -37.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642857669.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.193 kcal (2) G-P(sol) polarization free energy of solvation -30.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds