Wall clock time and date at job start Mon Mar 30 2020 02:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 119.99804 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99941 * 3 2 1 5 5 H 1.48503 * 109.47261 * 120.00122 * 3 2 1 6 6 H 1.48500 * 109.47454 * 0.02562 * 3 2 1 7 7 C 1.38950 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99613 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99824 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99695 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00009 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00201 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47342 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.45945 * 305.01841 * 13 12 10 15 15 C 1.53036 * 109.46185 * 185.05551 * 13 12 10 16 16 C 1.53121 * 109.27949 * 180.80171 * 15 13 12 17 17 C 1.53120 * 109.15669 * 57.65334 * 16 15 13 18 18 C 1.53035 * 109.28222 * 302.34415 * 17 16 15 19 19 N 1.46837 * 109.46630 * 65.00189 * 13 12 10 20 20 H 0.97001 * 119.99677 * 179.97438 * 1 2 3 21 21 H 0.96991 * 120.00558 * 0.02562 * 9 7 2 22 22 H 1.09002 * 109.47210 * 300.00401 * 12 10 9 23 23 H 1.09001 * 109.46665 * 60.00142 * 12 10 9 24 24 H 1.08999 * 109.50593 * 300.74274 * 15 13 12 25 25 H 1.09004 * 109.50591 * 60.86117 * 15 13 12 26 26 H 1.09001 * 109.52213 * 297.75376 * 16 15 13 27 27 H 1.08997 * 109.57284 * 177.58757 * 16 15 13 28 28 H 1.09006 * 109.50106 * 182.40462 * 17 16 15 29 29 H 1.08998 * 109.53402 * 62.31056 * 17 16 15 30 30 H 1.09003 * 109.46420 * 299.17016 * 18 17 16 31 31 H 1.08996 * 109.46635 * 179.19238 * 18 17 16 32 32 H 1.00907 * 111.00218 * 305.85907 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 3.1018 1.6965 1.2125 6 1 1.2831 2.7465 0.0006 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 6 2.2381 -6.0258 -0.0004 14 1 2.9230 -5.9186 -0.8415 15 6 1.4770 -7.3474 -0.1281 16 6 2.4743 -8.5091 -0.1068 17 6 3.2879 -8.4492 1.1890 18 6 3.9965 -7.0957 1.2785 19 7 2.9998 -6.0176 1.2550 20 1 -0.4850 -0.8401 -0.0004 21 1 0.3534 -2.3906 -0.0005 22 1 0.6168 -4.9209 0.8886 23 1 0.6176 -4.9204 -0.8914 24 1 0.7820 -7.4491 0.7053 25 1 0.9241 -7.3597 -1.0674 26 1 3.1451 -8.4291 -0.9621 27 1 1.9343 -9.4548 -0.1544 28 1 4.0289 -9.2486 1.1907 29 1 2.6219 -8.5685 2.0435 30 1 4.6732 -6.9832 0.4314 31 1 4.5653 -7.0442 2.2069 32 1 3.4344 -5.1199 1.4084 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642857669.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:28 Heat of formation + Delta-G solvation = -82.355591 kcal Electronic energy + Delta-G solvation = -14268.187840 eV Core-core repulsion = 11840.470613 eV Total energy + Delta-G solvation = -2427.717227 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.73882 -39.07744 -36.40591 -33.67480 -33.10230 -32.63335 -28.91707 -26.37345 -24.44197 -23.11979 -21.27780 -20.56819 -19.95898 -17.99662 -17.32742 -16.68430 -16.49136 -15.56132 -15.22946 -15.15123 -15.08333 -14.46872 -13.92706 -13.54776 -13.35849 -13.10190 -12.89431 -12.61360 -12.00061 -11.92751 -11.90280 -11.65765 -11.55857 -11.41280 -11.24860 -10.37352 -10.13359 -9.35972 -8.94311 -6.08342 1.51294 1.53603 1.81897 1.99397 2.41705 3.02237 3.15588 3.29673 3.81688 3.93668 4.03388 4.14209 4.30912 4.39013 4.50764 4.60407 4.61721 4.82650 4.85552 4.95629 5.04915 5.10887 5.22041 5.28044 5.48918 5.60644 5.93961 6.20356 6.39086 6.55054 6.72860 7.42666 7.89677 8.53225 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.071106 B = 0.006401 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.681427 B = 4373.114946 C = 4632.926191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.042 4.042 3 Si 1.134 2.866 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.413 4.413 8 H 0.074 0.926 9 N -0.585 5.585 10 C 0.443 3.557 11 O -0.628 6.628 12 C -0.119 4.119 13 C 0.109 3.891 14 H 0.015 0.985 15 C -0.108 4.108 16 C -0.119 4.119 17 C -0.111 4.111 18 C 0.053 3.947 19 N -0.694 5.694 20 H 0.259 0.741 21 H 0.385 0.615 22 H 0.101 0.899 23 H 0.106 0.894 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.053 0.947 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.013 0.987 31 H 0.075 0.925 32 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.125 -14.129 0.489 14.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.240 4.240 3 Si 0.954 3.046 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.542 4.542 8 H 0.092 0.908 9 N -0.222 5.222 10 C 0.232 3.768 11 O -0.516 6.516 12 C -0.159 4.159 13 C -0.002 4.002 14 H 0.033 0.967 15 C -0.146 4.146 16 C -0.157 4.157 17 C -0.149 4.149 18 C -0.077 4.077 19 N -0.328 5.328 20 H 0.070 0.930 21 H 0.219 0.781 22 H 0.119 0.881 23 H 0.125 0.875 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.071 0.929 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.032 0.968 31 H 0.093 0.907 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.263 -12.818 0.828 12.907 hybrid contribution 0.444 -1.026 -0.641 1.288 sum 1.707 -13.844 0.187 13.950 Atomic orbital electron populations 1.70970 1.07021 1.29506 1.47994 1.27846 0.96683 1.05392 0.94109 0.82624 0.73805 0.70297 0.77880 1.19853 1.19831 1.19668 1.20549 0.93936 0.85786 1.53923 0.90843 1.42056 1.08639 1.05627 1.65898 1.21004 0.88233 0.86154 0.81406 1.90422 1.15975 1.88024 1.57186 1.21648 0.98946 0.90307 1.04997 1.21141 0.93986 0.94503 0.90525 0.96707 1.21648 0.97993 0.92099 1.02828 1.21583 0.97935 0.98669 0.97479 1.21588 0.99584 0.95250 0.98495 1.21994 0.93110 0.92520 1.00028 1.60568 1.29145 1.08411 1.34667 0.92997 0.78129 0.88068 0.87544 0.90618 0.90233 0.92852 0.89530 0.89983 0.91131 0.96819 0.90664 0.83942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.65 13.68 21.66 0.30 -51.35 16 2 C -0.04 -2.30 5.50 84.93 0.47 -1.84 16 3 Si 1.13 48.89 29.92 68.60 2.05 50.94 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.41 -23.84 9.68 84.04 0.81 -23.03 16 8 H 0.07 4.54 7.16 -2.91 -0.02 4.52 16 9 N -0.58 -30.16 5.28 -306.98 -1.62 -31.78 16 10 C 0.44 21.20 7.49 87.66 0.66 21.85 16 11 O -0.63 -34.42 13.77 -3.07 -0.04 -34.46 16 12 C -0.12 -4.13 5.38 29.85 0.16 -3.97 16 13 C 0.11 3.56 2.10 44.94 0.09 3.66 16 14 H 0.01 0.56 7.95 -2.39 -0.02 0.54 16 15 C -0.11 -2.56 5.37 30.65 0.16 -2.40 16 16 C -0.12 -2.45 6.00 30.67 0.18 -2.27 16 17 C -0.11 -2.38 6.09 30.65 0.19 -2.20 16 18 C 0.05 1.49 6.55 86.32 0.57 2.05 16 19 N -0.69 -23.80 6.50 -491.71 -3.20 -27.00 16 20 H 0.26 14.16 6.77 -92.71 -0.63 13.53 16 21 H 0.38 18.33 6.73 -92.71 -0.62 17.70 16 22 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 23 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 24 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.34 14.05 6.52 -89.69 -0.59 13.47 16 Total: -1.00 -67.12 261.21 0.83 -66.29 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: 0.05 Total: 35.49 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 3.29 Total: -8.13 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -4.52 Total: -110.13 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -0.04 Total: -34.46 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 2.05 Total: 50.94 kcal Total: -67.12 0.83 -66.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642857669.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.065 kcal (2) G-P(sol) polarization free energy of solvation -67.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds