Wall clock time and date at job start Mon Mar 30 2020 02:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86791 * 120.00181 * 2 1 4 4 H 1.48500 * 109.47500 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.47144 * 299.99989 * 3 2 1 6 6 H 1.48501 * 109.47466 * 59.99818 * 3 2 1 7 7 C 1.38946 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00016 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00169 * 359.97438 * 7 2 1 10 10 C 1.34782 * 119.99813 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00341 * 359.97438 * 10 9 7 12 12 C 1.50709 * 119.99878 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.46974 * 173.73185 * 12 10 9 14 14 H 1.09003 * 109.46890 * 54.60654 * 13 12 10 15 15 C 1.52997 * 109.47503 * 294.60642 * 13 12 10 16 16 N 1.46897 * 109.47254 * 175.00083 * 15 13 12 17 17 C 1.53001 * 109.46760 * 174.60187 * 13 12 10 18 18 C 1.52999 * 117.51838 * 224.99066 * 17 13 12 19 19 C 1.53001 * 117.50163 * 293.62203 * 17 13 12 20 20 H 0.96996 * 120.00138 * 0.02562 * 1 2 3 21 21 H 0.96999 * 120.00553 * 0.02562 * 9 7 2 22 22 H 1.09001 * 109.46534 * 53.73199 * 12 10 9 23 23 H 1.08993 * 109.46794 * 293.73709 * 12 10 9 24 24 H 1.09003 * 109.46967 * 294.99914 * 15 13 12 25 25 H 1.08999 * 109.47080 * 54.99669 * 15 13 12 26 26 H 1.00892 * 111.00162 * 179.97438 * 16 15 13 27 27 H 1.00897 * 111.00152 * 303.95230 * 16 15 13 28 28 H 1.09001 * 115.55044 * 79.29174 * 17 13 12 29 29 H 1.08995 * 117.50021 * 214.97220 * 18 17 13 30 30 H 1.09002 * 117.50217 * 359.97438 * 18 17 13 31 31 H 1.08998 * 117.49961 * 359.97404 * 19 17 13 32 32 H 1.08997 * 117.49942 * 144.99645 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2436 -4.8630 -0.0011 13 6 2.2305 -6.0216 -0.1585 14 1 2.9951 -5.9552 0.6155 15 6 2.8914 -5.9450 -1.5362 16 7 3.9240 -6.9844 -1.6423 17 6 1.4830 -7.3498 -0.0244 18 6 2.1182 -8.4334 0.8493 19 6 0.8772 -7.6850 1.3400 20 1 -0.4850 0.8400 -0.0004 21 1 0.3533 -2.3907 -0.0005 22 1 0.5358 -4.8734 -0.8300 23 1 0.7034 -4.9710 0.9393 24 1 2.1389 -6.1003 -2.3093 25 1 3.3486 -4.9641 -1.6659 26 1 4.3754 -6.9549 -2.5441 27 1 4.5990 -6.9011 -0.8969 28 1 0.9373 -7.6737 -0.9106 29 1 1.9904 -9.4701 0.5378 30 1 3.0691 -8.2003 1.3284 31 1 1.0115 -6.9595 2.1422 32 1 -0.0670 -8.2294 1.3514 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690561274.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:33 Heat of formation + Delta-G solvation = -53.031689 kcal Electronic energy + Delta-G solvation = -14110.351806 eV Core-core repulsion = 11683.906159 eV Total energy + Delta-G solvation = -2426.445647 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.52096 -38.67365 -36.07849 -35.23957 -33.33564 -32.21388 -27.82023 -25.85980 -23.66503 -23.04309 -21.27496 -20.55922 -19.81591 -17.74586 -16.79401 -16.61739 -16.30467 -15.87403 -15.71393 -15.48942 -14.66583 -14.22244 -14.11849 -13.53742 -13.10426 -12.82927 -12.72004 -12.41843 -12.28136 -12.14512 -12.04574 -11.67508 -11.51483 -10.99790 -10.73319 -10.29564 -10.02882 -9.45873 -8.48087 -5.96972 1.35032 1.40047 1.54188 2.05658 2.28600 3.00927 3.19633 3.28926 3.67379 3.83560 4.12782 4.20530 4.30737 4.39698 4.49442 4.70188 4.74014 4.79571 4.89655 4.99240 5.08871 5.18591 5.30376 5.39917 5.40363 5.56284 5.99216 6.24459 6.57998 6.64078 7.11133 7.56102 8.11145 8.69700 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.050445 B = 0.006741 C = 0.006242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.922828 B = 4152.670551 C = 4484.575697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.993 3.007 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.575 5.575 10 C 0.438 3.562 11 O -0.630 6.630 12 C -0.115 4.115 13 C -0.026 4.026 14 H 0.052 0.948 15 C 0.070 3.930 16 N -0.836 5.836 17 C -0.131 4.131 18 C -0.162 4.162 19 C -0.187 4.187 20 H 0.278 0.722 21 H 0.396 0.604 22 H 0.096 0.904 23 H 0.097 0.903 24 H 0.070 0.930 25 H 0.012 0.988 26 H 0.343 0.657 27 H 0.338 0.662 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.036 -12.046 -0.624 12.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.817 3.183 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.211 5.211 10 C 0.227 3.773 11 O -0.518 6.518 12 C -0.155 4.155 13 C -0.045 4.045 14 H 0.070 0.930 15 C -0.061 4.061 16 N -0.365 5.365 17 C -0.149 4.149 18 C -0.198 4.198 19 C -0.224 4.224 20 H 0.087 0.913 21 H 0.230 0.770 22 H 0.114 0.886 23 H 0.116 0.884 24 H 0.088 0.912 25 H 0.030 0.970 26 H 0.156 0.844 27 H 0.150 0.850 28 H 0.126 0.874 29 H 0.121 0.879 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.010 -12.397 -0.531 12.408 hybrid contribution 0.567 1.903 -0.085 1.987 sum 0.577 -10.494 -0.616 10.528 Atomic orbital electron populations 1.69681 1.06861 1.29246 1.50417 1.26051 0.96542 1.02459 0.96299 0.84874 0.77971 0.77117 0.78382 1.19853 1.19532 1.19557 1.19712 0.92658 0.84189 1.49864 0.90401 1.42030 1.09332 1.04878 1.64898 1.21032 0.88231 0.86355 0.81691 1.90453 1.15917 1.88200 1.57182 1.21505 0.98848 0.90585 1.04611 1.20285 0.95450 0.91705 0.97072 0.92963 1.21742 0.95027 0.92454 0.96867 1.58780 1.18593 1.50936 1.08178 1.22010 1.02991 0.94988 0.94913 1.22859 0.96606 0.97217 1.03166 1.23051 0.98188 1.03824 0.97316 0.91286 0.77039 0.88563 0.88449 0.91170 0.96988 0.84445 0.85033 0.87442 0.87881 0.89903 0.89791 0.87413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.21 13.05 21.66 0.28 -49.93 16 2 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 3 Si 0.99 43.21 29.55 68.60 2.03 45.24 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.33 -19.20 9.68 84.04 0.81 -18.39 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.58 -29.92 5.29 -306.97 -1.62 -31.54 16 10 C 0.44 20.90 7.34 87.66 0.64 21.55 16 11 O -0.63 -34.30 13.85 -3.05 -0.04 -34.34 16 12 C -0.11 -3.99 5.13 29.85 0.15 -3.84 16 13 C -0.03 -0.81 1.74 -10.80 -0.02 -0.83 16 14 H 0.05 1.89 7.67 -2.39 -0.02 1.87 16 15 C 0.07 2.24 5.97 86.30 0.52 2.76 16 16 N -0.84 -22.11 9.35 -186.73 -1.75 -23.86 16 17 C -0.13 -3.27 4.80 -10.79 -0.05 -3.32 16 18 C -0.16 -3.61 10.18 30.59 0.31 -3.30 16 19 C -0.19 -4.15 9.76 30.60 0.30 -3.85 16 20 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 21 H 0.40 19.69 7.90 -92.71 -0.73 18.96 16 22 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 23 H 0.10 3.07 7.58 -2.39 -0.02 3.05 16 24 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.01 0.48 6.14 -2.39 -0.01 0.46 16 26 H 0.34 7.87 9.08 -89.70 -0.81 7.06 16 27 H 0.34 8.99 8.99 -89.70 -0.81 8.18 16 28 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.08 1.96 8.09 -2.39 -0.02 1.94 16 31 H 0.08 2.01 7.99 -2.39 -0.02 1.99 16 32 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -64.09 272.12 0.82 -63.27 By element: Atomic # 1 Polarization: 41.87 SS G_CDS: -1.21 Total: 40.66 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 3.13 Total: -9.50 kcal Atomic # 7 Polarization: -102.24 SS G_CDS: -3.09 Total: -105.33 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -0.04 Total: -34.34 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -64.09 0.82 -63.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690561274.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.234 kcal (2) G-P(sol) polarization free energy of solvation -64.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds