Wall clock time and date at job start Mon Mar 30 2020 02:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 120.00170 * 2 1 4 4 H 1.48501 * 109.47370 * 270.00079 * 3 2 1 5 5 H 1.48497 * 109.47269 * 29.99754 * 3 2 1 6 6 H 1.48500 * 109.47223 * 149.99575 * 3 2 1 7 7 C 1.38959 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99893 * 0.02562 * 7 2 1 9 9 N 1.37095 * 120.00032 * 179.97438 * 7 2 1 10 10 C 1.34770 * 120.00124 * 179.97438 * 9 7 2 11 11 O 1.21300 * 119.99756 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00513 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.47613 * 180.02562 * 12 10 9 14 14 H 1.09005 * 109.47069 * 305.00091 * 13 12 10 15 15 C 1.52997 * 109.47314 * 65.00080 * 13 12 10 16 16 N 1.46896 * 109.47380 * 185.00314 * 15 13 12 17 17 C 1.53003 * 109.47408 * 185.00386 * 13 12 10 18 18 C 1.53000 * 117.49792 * 59.99743 * 17 13 12 19 19 C 1.53002 * 60.02940 * 107.48056 * 18 17 13 20 20 H 0.96999 * 119.99916 * 0.02562 * 1 2 3 21 21 H 0.97002 * 120.00404 * 0.02562 * 9 7 2 22 22 H 1.09001 * 109.46842 * 60.00406 * 12 10 9 23 23 H 1.09001 * 109.47387 * 300.00828 * 12 10 9 24 24 H 1.09001 * 109.46954 * 305.00231 * 15 13 12 25 25 H 1.08994 * 109.46724 * 64.99876 * 15 13 12 26 26 H 1.00904 * 111.00143 * 179.97438 * 16 15 13 27 27 H 1.00901 * 110.99620 * 303.95403 * 16 15 13 28 28 H 1.08999 * 115.54778 * 274.33106 * 17 13 12 29 29 H 1.09002 * 117.49833 * 214.98161 * 18 17 13 30 30 H 1.09002 * 117.49953 * 359.97438 * 18 17 13 31 31 H 1.09000 * 117.49996 * 107.50493 * 19 18 17 32 32 H 1.08999 * 117.49664 * 252.51862 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5456 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3799 -1.2034 0.0000 10 6 4.0538 -2.3705 0.0011 11 8 3.4472 -3.4210 0.0020 12 6 5.5607 -2.3706 0.0011 13 6 6.0708 -3.8131 0.0017 14 1 5.6361 -4.3518 0.8438 15 6 5.6661 -4.4977 -1.3053 16 7 6.0502 -5.9147 -1.2552 17 6 7.5956 -3.8149 0.1275 18 6 8.2022 -3.1710 1.3759 19 6 8.2136 -4.6929 1.2185 20 1 -0.4850 0.8400 -0.0004 21 1 3.8649 -0.3634 -0.0004 22 1 5.9240 -1.8560 0.8906 23 1 5.9241 -1.8575 -0.8893 24 1 4.5871 -4.4183 -1.4381 25 1 6.1716 -4.0135 -2.1407 26 1 5.7930 -6.3894 -2.1077 27 1 7.0366 -6.0155 -1.0683 28 1 8.1446 -3.7131 -0.8086 29 1 9.1505 -2.6460 1.2611 30 1 7.5150 -2.7458 2.1073 31 1 9.1695 -5.1691 1.0003 32 1 7.5337 -5.2688 1.8462 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690561279.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:35 Heat of formation + Delta-G solvation = -22.726969 kcal Electronic energy + Delta-G solvation = -14160.990365 eV Core-core repulsion = 11735.858830 eV Total energy + Delta-G solvation = -2425.131536 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.05483 -37.47805 -34.44256 -33.75126 -31.69994 -30.96656 -26.28297 -23.93313 -22.62425 -22.26064 -19.77200 -19.15206 -18.11745 -16.00691 -15.94152 -15.14118 -14.90981 -14.57255 -14.17258 -13.66522 -13.35665 -12.73693 -12.40207 -12.19946 -11.86246 -11.56786 -11.45394 -11.22909 -10.84028 -10.61021 -10.54261 -10.02688 -9.94356 -9.81671 -9.50989 -8.46422 -8.32356 -8.13301 -6.29175 -3.80088 3.04420 3.08243 3.16277 3.78598 3.84038 4.12019 4.56082 4.81355 4.86671 5.00610 5.11858 5.24032 5.41331 5.57292 5.66512 5.69163 5.76113 5.91153 5.96150 6.07998 6.15863 6.18766 6.27554 6.70397 6.72272 7.44082 7.59715 7.71361 8.18382 8.62136 8.97709 9.45915 9.87035 10.84096 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.042943 B = 0.007509 C = 0.006730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.865769 B = 3728.075637 C = 4159.535413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.448 3.552 11 O -0.571 6.571 12 C -0.128 4.128 13 C -0.035 4.035 14 H 0.087 0.913 15 C 0.065 3.935 16 N -0.845 5.845 17 C -0.148 4.148 18 C -0.183 4.183 19 C -0.175 4.175 20 H 0.273 0.727 21 H 0.370 0.630 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.101 0.899 25 H 0.012 0.988 26 H 0.335 0.665 27 H 0.331 0.669 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.435 -3.049 -0.821 16.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.705 3.295 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.235 3.765 11 O -0.454 6.454 12 C -0.169 4.169 13 C -0.054 4.054 14 H 0.105 0.895 15 C -0.065 4.065 16 N -0.374 5.374 17 C -0.167 4.167 18 C -0.220 4.220 19 C -0.212 4.212 20 H 0.083 0.917 21 H 0.203 0.797 22 H 0.098 0.902 23 H 0.095 0.905 24 H 0.119 0.881 25 H 0.031 0.969 26 H 0.147 0.853 27 H 0.143 0.857 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 15.295 -3.670 -0.203 15.731 hybrid contribution 1.254 1.777 -0.822 2.325 sum 16.549 -1.893 -1.025 16.689 Atomic orbital electron populations 1.69625 1.05645 1.27442 1.49536 1.25047 0.95489 0.97967 0.97709 0.86680 0.79826 0.84088 0.78867 1.19667 1.20200 1.19460 1.19466 0.79437 0.96601 1.47913 0.86281 1.42279 1.07502 1.06332 1.66884 1.19910 0.88683 0.84379 0.83566 1.90550 1.69896 1.30757 1.54182 1.21560 0.94625 0.97841 1.02908 1.20437 0.90587 0.94565 0.99812 0.89465 1.22018 1.03087 0.86866 0.94575 1.58666 1.22604 1.13870 1.42253 1.22420 0.95936 1.04984 0.93322 1.22939 1.02389 0.95686 1.01016 1.22989 1.02153 0.93270 1.02834 0.91663 0.79694 0.90165 0.90549 0.88083 0.96943 0.85339 0.85685 0.88567 0.89232 0.88658 0.89347 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.02 13.96 55.50 0.77 -25.24 16 2 C 0.04 1.13 5.50 -17.46 -0.10 1.03 16 3 Si 0.88 19.59 27.74 -169.99 -4.71 14.87 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 7 C -0.31 -8.72 10.16 -14.93 -0.15 -8.88 16 8 H 0.12 3.88 7.39 -52.48 -0.39 3.49 16 9 N -0.59 -14.25 5.09 -10.96 -0.06 -14.31 16 10 C 0.45 10.17 7.46 -10.99 -0.08 10.09 16 11 O -0.57 -15.11 13.57 5.54 0.08 -15.04 16 12 C -0.13 -2.13 5.09 -27.89 -0.14 -2.28 16 13 C -0.03 -0.54 1.86 -90.62 -0.17 -0.71 16 14 H 0.09 1.59 7.71 -51.93 -0.40 1.19 16 15 C 0.06 1.03 6.01 -3.83 -0.02 1.01 16 16 N -0.85 -11.67 9.62 -10.37 -0.10 -11.77 16 17 C -0.15 -1.79 4.19 -90.58 -0.38 -2.17 16 18 C -0.18 -2.02 9.67 -26.73 -0.26 -2.28 16 19 C -0.18 -1.91 10.17 -26.69 -0.27 -2.18 16 20 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 21 H 0.37 7.89 5.76 -40.82 -0.24 7.65 16 22 H 0.08 1.20 7.12 -51.93 -0.37 0.83 16 23 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 24 H 0.10 2.02 5.88 -51.93 -0.31 1.72 16 25 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.33 4.05 9.08 -39.29 -0.36 3.69 16 27 H 0.33 3.90 8.06 -39.29 -0.32 3.58 16 28 H 0.10 1.07 8.11 -51.93 -0.42 0.65 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 1.14 8.05 -51.93 -0.42 0.72 16 LS Contribution 266.45 15.07 4.02 4.02 Total: -1.00 -31.60 266.45 -6.04 -37.64 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -4.46 Total: 16.19 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -1.57 Total: -6.36 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.62 Total: -51.32 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.08 Total: -15.04 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.71 Total: 14.87 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.60 -6.04 -37.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690561279.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.917 kcal (2) G-P(sol) polarization free energy of solvation -31.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds