Wall clock time and date at job start Mon Mar 30 2020 02:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 120.00170 * 2 1 4 4 H 1.48501 * 109.47370 * 270.00079 * 3 2 1 5 5 H 1.48497 * 109.47269 * 29.99754 * 3 2 1 6 6 H 1.48500 * 109.47223 * 149.99575 * 3 2 1 7 7 C 1.38959 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99893 * 0.02562 * 7 2 1 9 9 N 1.37095 * 120.00032 * 179.97438 * 7 2 1 10 10 C 1.34770 * 120.00124 * 179.97438 * 9 7 2 11 11 O 1.21300 * 119.99756 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00513 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.47613 * 180.02562 * 12 10 9 14 14 H 1.09005 * 109.47069 * 305.00091 * 13 12 10 15 15 C 1.52997 * 109.47314 * 65.00080 * 13 12 10 16 16 N 1.46896 * 109.47380 * 185.00314 * 15 13 12 17 17 C 1.53003 * 109.47408 * 185.00386 * 13 12 10 18 18 C 1.53000 * 117.49792 * 59.99743 * 17 13 12 19 19 C 1.53002 * 60.02940 * 107.48056 * 18 17 13 20 20 H 0.96999 * 119.99916 * 0.02562 * 1 2 3 21 21 H 0.97002 * 120.00404 * 0.02562 * 9 7 2 22 22 H 1.09001 * 109.46842 * 60.00406 * 12 10 9 23 23 H 1.09001 * 109.47387 * 300.00828 * 12 10 9 24 24 H 1.09001 * 109.46954 * 305.00231 * 15 13 12 25 25 H 1.08994 * 109.46724 * 64.99876 * 15 13 12 26 26 H 1.00904 * 111.00143 * 179.97438 * 16 15 13 27 27 H 1.00901 * 110.99620 * 303.95403 * 16 15 13 28 28 H 1.08999 * 115.54778 * 274.33106 * 17 13 12 29 29 H 1.09002 * 117.49833 * 214.98161 * 18 17 13 30 30 H 1.09002 * 117.49953 * 359.97438 * 18 17 13 31 31 H 1.09000 * 117.49996 * 107.50493 * 19 18 17 32 32 H 1.08999 * 117.49664 * 252.51862 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5456 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3799 -1.2034 0.0000 10 6 4.0538 -2.3705 0.0011 11 8 3.4472 -3.4210 0.0020 12 6 5.5607 -2.3706 0.0011 13 6 6.0708 -3.8131 0.0017 14 1 5.6361 -4.3518 0.8438 15 6 5.6661 -4.4977 -1.3053 16 7 6.0502 -5.9147 -1.2552 17 6 7.5956 -3.8149 0.1275 18 6 8.2022 -3.1710 1.3759 19 6 8.2136 -4.6929 1.2185 20 1 -0.4850 0.8400 -0.0004 21 1 3.8649 -0.3634 -0.0004 22 1 5.9240 -1.8560 0.8906 23 1 5.9241 -1.8575 -0.8893 24 1 4.5871 -4.4183 -1.4381 25 1 6.1716 -4.0135 -2.1407 26 1 5.7930 -6.3894 -2.1077 27 1 7.0366 -6.0155 -1.0683 28 1 8.1446 -3.7131 -0.8086 29 1 9.1505 -2.6460 1.2611 30 1 7.5150 -2.7458 2.1073 31 1 9.1695 -5.1691 1.0003 32 1 7.5337 -5.2688 1.8462 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690561279.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:34 Heat of formation + Delta-G solvation = -47.571232 kcal Electronic energy + Delta-G solvation = -14162.067693 eV Core-core repulsion = 11735.858830 eV Total energy + Delta-G solvation = -2426.208864 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.65360 -38.80601 -36.11046 -35.23455 -33.76879 -32.34521 -27.93866 -25.67058 -23.77349 -23.11835 -21.33935 -20.75883 -19.96442 -17.72036 -17.02607 -16.82496 -16.34248 -15.85346 -15.69419 -15.14339 -14.86732 -14.52498 -14.06569 -13.66334 -13.35707 -12.95081 -12.78891 -12.40946 -12.32742 -12.02707 -11.96645 -11.77925 -11.47456 -10.99495 -10.79767 -10.30327 -10.22124 -9.48527 -8.41646 -6.02122 1.29647 1.34813 1.43883 1.97774 2.22646 2.83657 3.08827 3.15494 3.65622 3.80062 4.03543 4.16512 4.26915 4.30494 4.40777 4.56528 4.66789 4.76285 4.86371 4.95307 5.07725 5.17520 5.37436 5.39207 5.52137 5.56044 5.96513 6.33781 6.58699 6.73852 6.88902 7.40732 7.98644 8.76252 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.042943 B = 0.007509 C = 0.006730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.865769 B = 3728.075637 C = 4159.535413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.016 4.016 3 Si 0.965 3.035 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.232 1.232 7 C -0.330 4.330 8 H 0.054 0.946 9 N -0.593 5.593 10 C 0.446 3.554 11 O -0.616 6.616 12 C -0.117 4.117 13 C -0.031 4.031 14 H 0.051 0.949 15 C 0.068 3.932 16 N -0.852 5.852 17 C -0.150 4.150 18 C -0.176 4.176 19 C -0.172 4.172 20 H 0.279 0.721 21 H 0.389 0.611 22 H 0.107 0.893 23 H 0.109 0.891 24 H 0.052 0.948 25 H 0.034 0.966 26 H 0.344 0.656 27 H 0.347 0.653 28 H 0.117 0.883 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.338 -1.207 -0.982 20.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.215 4.215 3 Si 0.784 3.216 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.155 1.155 7 C -0.459 4.459 8 H 0.072 0.928 9 N -0.234 5.234 10 C 0.235 3.765 11 O -0.501 6.501 12 C -0.157 4.157 13 C -0.050 4.050 14 H 0.070 0.930 15 C -0.062 4.062 16 N -0.383 5.383 17 C -0.168 4.168 18 C -0.213 4.213 19 C -0.209 4.209 20 H 0.088 0.912 21 H 0.225 0.775 22 H 0.125 0.875 23 H 0.127 0.873 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.157 0.843 27 H 0.161 0.839 28 H 0.135 0.865 29 H 0.131 0.869 30 H 0.105 0.895 31 H 0.130 0.870 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 19.233 -1.850 -0.363 19.326 hybrid contribution -0.032 1.024 -0.768 1.280 sum 19.202 -0.827 -1.131 19.253 Atomic orbital electron populations 1.69809 1.08153 1.29220 1.50452 1.26132 0.96481 1.02742 0.96109 0.85369 0.79486 0.76719 0.79990 1.18064 1.19960 1.15503 1.19041 0.81702 0.94890 1.50274 0.92769 1.42122 1.05757 1.07750 1.67804 1.21180 0.91408 0.83152 0.80757 1.90544 1.71764 1.32545 1.55251 1.21600 0.89065 0.99435 1.05609 1.20330 0.93349 0.93271 0.98081 0.93004 1.21807 1.00272 0.88443 0.95713 1.58551 1.23885 1.12799 1.43114 1.22245 0.93025 1.06715 0.94824 1.23032 1.02984 0.95738 0.99575 1.23033 1.02637 0.93506 1.01724 0.91169 0.77533 0.87512 0.87320 0.93000 0.94832 0.84304 0.83946 0.86534 0.86877 0.89549 0.87014 0.90148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.21 13.96 21.67 0.30 -56.91 16 2 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 3 Si 0.96 39.33 27.74 68.60 1.90 41.23 16 4 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.23 -7.99 6.52 99.48 0.65 -7.34 16 7 C -0.33 -19.69 10.16 84.04 0.85 -18.84 16 8 H 0.05 3.85 7.39 -2.91 -0.02 3.83 16 9 N -0.59 -28.57 5.09 -306.98 -1.56 -30.14 16 10 C 0.45 20.47 7.46 87.66 0.65 21.13 16 11 O -0.62 -34.45 13.57 -3.09 -0.04 -34.49 16 12 C -0.12 -3.61 5.09 29.85 0.15 -3.46 16 13 C -0.03 -0.92 1.86 -10.79 -0.02 -0.94 16 14 H 0.05 1.91 7.71 -2.38 -0.02 1.89 16 15 C 0.07 2.14 6.01 86.30 0.52 2.66 16 16 N -0.85 -22.82 9.62 -186.73 -1.80 -24.62 16 17 C -0.15 -3.09 4.19 -10.77 -0.05 -3.13 16 18 C -0.18 -3.19 9.67 30.60 0.30 -2.89 16 19 C -0.17 -3.21 10.17 30.62 0.31 -2.90 16 20 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 21 H 0.39 15.56 5.76 -92.71 -0.53 15.02 16 22 H 0.11 2.80 7.12 -2.39 -0.02 2.78 16 23 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 24 H 0.05 2.16 5.88 -2.39 -0.01 2.15 16 25 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.34 8.07 9.08 -89.69 -0.81 7.26 16 27 H 0.35 7.43 8.06 -89.69 -0.72 6.71 16 28 H 0.12 2.01 8.11 -2.39 -0.02 1.99 16 29 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.09 1.73 7.58 -2.39 -0.02 1.71 16 31 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.78 8.05 -2.39 -0.02 1.76 16 Total: -1.00 -75.02 266.45 1.01 -74.02 By element: Atomic # 1 Polarization: 40.73 SS G_CDS: -0.98 Total: 39.74 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 3.19 Total: -8.83 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -3.06 Total: -111.67 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.04 Total: -34.49 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 1.90 Total: 41.23 kcal Total: -75.02 1.01 -74.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690561279.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.445 kcal (2) G-P(sol) polarization free energy of solvation -75.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds