Wall clock time and date at job start Mon Mar 30 2020 02:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47143 * 2 1 4 4 H 1.09001 * 109.46941 * 304.99880 * 3 2 1 5 5 C 1.53000 * 109.47069 * 184.99845 * 3 2 1 6 6 C 1.52997 * 109.47254 * 172.02034 * 5 3 2 7 7 C 1.50700 * 115.54677 * 300.54168 * 6 5 3 8 8 H 1.07997 * 120.00049 * 99.22432 * 7 6 5 9 9 C 1.37875 * 119.99875 * 279.21900 * 7 6 5 10 10 N 1.31519 * 120.00362 * 6.17558 * 9 7 6 11 11 Si 1.86802 * 120.00205 * 186.17901 * 9 7 6 12 12 H 1.48491 * 109.47510 * 179.97438 * 11 9 7 13 13 H 1.48508 * 109.46978 * 300.00154 * 11 9 7 14 14 H 1.48506 * 109.47180 * 59.99524 * 11 9 7 15 15 C 1.52998 * 117.51956 * 86.23862 * 6 5 3 16 16 C 1.52995 * 117.50245 * 154.87083 * 6 5 3 17 17 C 1.50701 * 109.47134 * 64.99798 * 3 2 1 18 18 O 1.20826 * 119.99684 * 36.10167 * 17 3 2 19 19 O 1.34225 * 120.00091 * 216.10063 * 17 3 2 20 20 H 1.09001 * 109.46937 * 60.00343 * 1 2 3 21 21 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.47559 * 300.00250 * 1 2 3 23 23 H 1.09003 * 109.47058 * 239.99663 * 2 1 3 24 24 H 1.09008 * 109.46913 * 120.00079 * 2 1 3 25 25 H 1.08995 * 109.47100 * 52.01974 * 5 3 2 26 26 H 1.09001 * 109.46828 * 292.01829 * 5 3 2 27 27 H 0.96998 * 120.00054 * 174.97994 * 10 9 7 28 28 H 1.09005 * 117.50247 * 214.97245 * 15 6 5 29 29 H 1.08998 * 117.49673 * 359.97438 * 15 6 5 30 30 H 1.09006 * 117.49663 * 359.97438 * 16 6 5 31 31 H 1.08999 * 117.50442 * 144.99884 * 16 6 5 32 32 H 0.96699 * 116.99990 * 180.02562 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 6 4.0584 2.8786 -0.3256 7 6 3.5210 3.5872 -1.5422 8 1 2.6961 4.2773 -1.4447 9 6 4.0826 3.3545 -2.7797 10 7 5.0041 2.4265 -2.9197 11 14 3.5349 4.3572 -4.2575 12 1 4.2857 3.9166 -5.4605 13 1 2.0804 4.1567 -4.4802 14 1 3.8035 5.7961 -4.0065 15 6 4.3129 3.7196 0.9269 16 6 5.4919 3.1986 0.1027 17 6 1.6413 2.1163 1.2877 18 8 1.6303 1.4883 2.3198 19 8 1.2984 3.4140 1.2879 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.8596 0.8361 -0.9808 26 1 4.0047 1.0319 0.7824 27 1 5.3467 2.2124 -3.8016 28 1 4.0917 4.7856 0.8710 29 1 4.1283 3.2513 1.8937 30 1 6.0833 2.3873 0.5273 31 1 6.0464 3.9217 -0.4954 32 1 1.0505 3.8024 2.1381 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691692821.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:36 Heat of formation + Delta-G solvation = -92.054037 kcal Electronic energy + Delta-G solvation = -14844.426471 eV Core-core repulsion = 12383.995937 eV Total energy + Delta-G solvation = -2460.430534 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.86487 -36.80032 -35.61873 -34.12753 -31.93131 -29.43886 -25.56164 -24.27032 -22.82616 -21.04447 -19.51313 -18.93232 -17.60624 -16.22370 -15.70446 -15.00837 -14.57860 -13.89387 -13.56694 -13.34567 -13.00200 -12.40444 -12.08083 -11.69843 -11.40333 -10.95774 -10.93811 -10.85908 -10.79712 -10.57989 -10.45445 -10.33025 -10.14211 -9.66888 -9.31276 -8.76723 -8.42723 -7.98400 -6.01711 -4.07527 2.89082 3.30663 3.36141 3.39070 3.77154 4.40771 5.14891 5.26226 5.41666 5.50180 5.57007 5.89744 6.01312 6.14545 6.17934 6.28333 6.34955 6.39954 6.54217 6.57903 6.77110 6.80291 6.90338 7.03897 7.13278 7.20716 7.49808 7.64659 7.91102 8.48268 8.57608 8.95158 9.57805 11.06673 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.028998 B = 0.011710 C = 0.010339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.335592 B = 2390.571389 C = 2707.539815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.070 4.070 4 H 0.112 0.888 5 C -0.063 4.063 6 C 0.048 3.952 7 C -0.491 4.491 8 H 0.062 0.938 9 C 0.072 3.928 10 N -0.880 5.880 11 Si 0.887 3.113 12 H -0.288 1.288 13 H -0.276 1.276 14 H -0.277 1.277 15 C -0.208 4.208 16 C -0.166 4.166 17 C 0.499 3.501 18 O -0.542 6.542 19 O -0.501 6.501 20 H 0.056 0.944 21 H 0.053 0.947 22 H 0.048 0.952 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.035 0.965 27 H 0.260 0.740 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.893 -1.781 4.133 7.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.089 4.089 4 H 0.130 0.870 5 C -0.101 4.101 6 C 0.047 3.953 7 C -0.528 4.528 8 H 0.080 0.920 9 C -0.131 4.131 10 N -0.517 5.517 11 Si 0.715 3.285 12 H -0.214 1.214 13 H -0.202 1.202 14 H -0.203 1.203 15 C -0.246 4.246 16 C -0.203 4.203 17 C 0.344 3.656 18 O -0.433 6.433 19 O -0.310 6.310 20 H 0.075 0.925 21 H 0.072 0.928 22 H 0.067 0.933 23 H 0.096 0.904 24 H 0.087 0.913 25 H 0.106 0.894 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -5.608 -2.169 3.879 7.155 hybrid contribution -0.288 0.828 -0.220 0.904 sum -5.896 -1.341 3.658 7.067 Atomic orbital electron populations 1.21833 0.96304 1.01398 1.01591 1.21542 0.95448 0.95151 1.02988 1.21082 0.99855 0.94720 0.93251 0.86977 1.21111 0.89322 0.99204 1.00426 1.18859 0.94098 0.90509 0.91799 1.20407 1.16834 1.25175 0.90409 0.91973 1.24974 0.94396 0.95130 0.98627 1.69966 1.28279 1.30449 1.23008 0.86744 0.78700 0.80909 0.82145 1.21408 1.20188 1.20290 1.22926 1.06894 0.99671 0.95080 1.22577 0.92513 1.02100 1.03128 1.23766 0.70750 0.79296 0.91786 1.90605 1.51426 1.65865 1.35422 1.84734 1.78879 1.27062 1.40310 0.92458 0.92786 0.93308 0.90415 0.91283 0.89413 0.94624 0.93001 0.90496 0.92484 0.92080 0.90288 0.75098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.73 37.16 0.36 -1.85 16 2 C -0.11 -1.87 5.17 -26.73 -0.14 -2.01 16 3 C -0.07 -1.35 2.20 -91.77 -0.20 -1.55 16 4 H 0.11 2.31 7.28 -51.93 -0.38 1.93 16 5 C -0.06 -1.37 4.59 -26.73 -0.12 -1.50 16 6 C 0.05 1.14 1.11 -155.67 -0.17 0.97 16 7 C -0.49 -12.79 7.80 -34.44 -0.27 -13.06 16 8 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 9 C 0.07 1.89 5.42 -17.82 -0.10 1.80 16 10 N -0.88 -24.07 13.11 55.43 0.73 -23.34 16 11 Si 0.89 20.54 29.55 -169.99 -5.02 15.52 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 C -0.21 -4.61 8.48 -26.73 -0.23 -4.84 16 16 C -0.17 -3.92 9.70 -26.73 -0.26 -4.18 16 17 C 0.50 9.52 4.99 36.01 0.18 9.70 16 18 O -0.54 -11.09 16.81 -18.75 -0.32 -11.41 16 19 O -0.50 -8.63 12.77 -39.24 -0.50 -9.13 16 20 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.73 7.26 -51.93 -0.38 0.35 16 23 H 0.08 1.21 8.13 -51.93 -0.42 0.79 16 24 H 0.07 1.15 7.69 -51.92 -0.40 0.76 16 25 H 0.09 2.04 8.12 -51.93 -0.42 1.62 16 26 H 0.04 0.76 8.10 -51.93 -0.42 0.34 16 27 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 28 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 29 H 0.06 1.21 7.89 -51.93 -0.41 0.80 16 30 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 31 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 32 H 0.39 4.82 9.10 45.56 0.41 5.24 16 LS Contribution 273.16 15.07 4.12 4.12 Total: -1.00 -29.03 273.16 -6.02 -35.05 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -4.07 Total: 5.72 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -0.95 Total: -16.52 kcal Atomic # 7 Polarization: -24.07 SS G_CDS: 0.73 Total: -23.34 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.82 Total: -20.54 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.03 -6.02 -35.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691692821.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.007 kcal (2) G-P(sol) polarization free energy of solvation -29.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds