Wall clock time and date at job start Mon Mar 30 2020 02:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47143 * 2 1 4 4 H 1.09001 * 109.46941 * 304.99880 * 3 2 1 5 5 C 1.53000 * 109.47069 * 184.99845 * 3 2 1 6 6 C 1.52997 * 109.47254 * 172.02034 * 5 3 2 7 7 C 1.50700 * 115.54677 * 300.54168 * 6 5 3 8 8 H 1.07997 * 120.00049 * 99.22432 * 7 6 5 9 9 C 1.37875 * 119.99875 * 279.21900 * 7 6 5 10 10 N 1.31519 * 120.00362 * 6.17558 * 9 7 6 11 11 Si 1.86802 * 120.00205 * 186.17901 * 9 7 6 12 12 H 1.48491 * 109.47510 * 179.97438 * 11 9 7 13 13 H 1.48508 * 109.46978 * 300.00154 * 11 9 7 14 14 H 1.48506 * 109.47180 * 59.99524 * 11 9 7 15 15 C 1.52998 * 117.51956 * 86.23862 * 6 5 3 16 16 C 1.52995 * 117.50245 * 154.87083 * 6 5 3 17 17 C 1.50701 * 109.47134 * 64.99798 * 3 2 1 18 18 O 1.20826 * 119.99684 * 36.10167 * 17 3 2 19 19 O 1.34225 * 120.00091 * 216.10063 * 17 3 2 20 20 H 1.09001 * 109.46937 * 60.00343 * 1 2 3 21 21 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.47559 * 300.00250 * 1 2 3 23 23 H 1.09003 * 109.47058 * 239.99663 * 2 1 3 24 24 H 1.09008 * 109.46913 * 120.00079 * 2 1 3 25 25 H 1.08995 * 109.47100 * 52.01974 * 5 3 2 26 26 H 1.09001 * 109.46828 * 292.01829 * 5 3 2 27 27 H 0.96998 * 120.00054 * 174.97994 * 10 9 7 28 28 H 1.09005 * 117.50247 * 214.97245 * 15 6 5 29 29 H 1.08998 * 117.49673 * 359.97438 * 15 6 5 30 30 H 1.09006 * 117.49663 * 359.97438 * 16 6 5 31 31 H 1.08999 * 117.50442 * 144.99884 * 16 6 5 32 32 H 0.96699 * 116.99990 * 180.02562 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 6 4.0584 2.8786 -0.3256 7 6 3.5210 3.5872 -1.5422 8 1 2.6961 4.2773 -1.4447 9 6 4.0826 3.3545 -2.7797 10 7 5.0041 2.4265 -2.9197 11 14 3.5349 4.3572 -4.2575 12 1 4.2857 3.9166 -5.4605 13 1 2.0804 4.1567 -4.4802 14 1 3.8035 5.7961 -4.0065 15 6 4.3129 3.7196 0.9269 16 6 5.4919 3.1986 0.1027 17 6 1.6413 2.1163 1.2877 18 8 1.6303 1.4883 2.3198 19 8 1.2984 3.4140 1.2879 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.8596 0.8361 -0.9808 26 1 4.0047 1.0319 0.7824 27 1 5.3467 2.2124 -3.8016 28 1 4.0917 4.7856 0.8710 29 1 4.1283 3.2513 1.8937 30 1 6.0833 2.3873 0.5273 31 1 6.0464 3.9217 -0.4954 32 1 1.0505 3.8024 2.1381 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691692821.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:36 Heat of formation + Delta-G solvation = -108.627383 kcal Electronic energy + Delta-G solvation = -14845.145145 eV Core-core repulsion = 12383.995937 eV Total energy + Delta-G solvation = -2461.149208 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.37065 -38.57860 -37.07460 -35.60373 -33.94325 -30.90083 -27.53473 -25.91623 -24.17306 -22.89550 -21.04892 -20.73822 -19.09002 -17.95557 -17.38345 -16.52918 -16.50383 -15.70191 -15.00223 -14.87253 -14.46931 -13.87255 -13.75341 -13.41287 -12.97456 -12.81552 -12.70729 -12.41761 -12.34970 -12.16161 -12.05113 -11.97901 -11.75430 -11.24264 -11.11030 -10.70436 -10.37248 -9.85441 -8.03008 -6.13588 1.38084 1.46877 1.49175 1.55117 2.39714 2.48079 3.24942 3.47544 3.84501 4.14782 4.25390 4.38874 4.50036 4.63046 4.64881 4.74430 4.83907 4.95472 5.02704 5.03700 5.13819 5.21249 5.32173 5.34056 5.38426 5.61693 5.76989 5.78460 5.90239 6.49947 6.92588 7.21089 7.54028 9.04736 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.028998 B = 0.011710 C = 0.010339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.335592 B = 2390.571389 C = 2707.539815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.069 4.069 4 H 0.098 0.902 5 C -0.054 4.054 6 C 0.029 3.971 7 C -0.498 4.498 8 H 0.056 0.944 9 C 0.030 3.970 10 N -0.906 5.906 11 Si 0.943 3.057 12 H -0.289 1.289 13 H -0.268 1.268 14 H -0.278 1.278 15 C -0.184 4.184 16 C -0.176 4.176 17 C 0.505 3.495 18 O -0.557 6.557 19 O -0.504 6.504 20 H 0.061 0.939 21 H 0.076 0.924 22 H 0.041 0.959 23 H 0.083 0.917 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.037 0.963 27 H 0.259 0.741 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.964 -1.676 4.362 8.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.088 4.088 4 H 0.116 0.884 5 C -0.092 4.092 6 C 0.029 3.971 7 C -0.536 4.536 8 H 0.074 0.926 9 C -0.170 4.170 10 N -0.544 5.544 11 Si 0.769 3.231 12 H -0.214 1.214 13 H -0.193 1.193 14 H -0.204 1.204 15 C -0.221 4.221 16 C -0.213 4.213 17 C 0.350 3.650 18 O -0.449 6.449 19 O -0.315 6.315 20 H 0.080 0.920 21 H 0.095 0.905 22 H 0.060 0.940 23 H 0.102 0.898 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -6.696 -2.042 4.124 8.125 hybrid contribution 0.056 0.844 -0.251 0.882 sum -6.640 -1.198 3.873 7.779 Atomic orbital electron populations 1.21796 0.94481 1.02920 1.01442 1.21534 0.97036 0.93134 1.03140 1.21014 0.98020 0.96590 0.93159 0.88359 1.20936 0.91239 0.97486 0.99563 1.19001 0.94146 0.91798 0.92168 1.20596 1.16569 1.25025 0.91417 0.92616 1.25579 0.94600 0.95914 1.00927 1.70066 1.29306 1.31675 1.23380 0.85859 0.78641 0.79334 0.79262 1.21429 1.19307 1.20364 1.22843 1.04863 0.99538 0.94880 1.22531 0.92738 1.02239 1.03830 1.23558 0.70511 0.79699 0.91221 1.90602 1.52177 1.66332 1.35758 1.84677 1.78459 1.26159 1.42222 0.91999 0.90486 0.94009 0.89827 0.91554 0.91340 0.94430 0.93162 0.90318 0.91160 0.91342 0.92211 0.72496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 9.73 71.98 0.70 -3.26 16 2 C -0.11 -3.49 5.17 30.59 0.16 -3.33 16 3 C -0.07 -2.58 2.20 -11.54 -0.03 -2.61 16 4 H 0.10 3.98 7.28 -2.39 -0.02 3.96 16 5 C -0.05 -2.35 4.59 30.59 0.14 -2.21 16 6 C 0.03 1.38 1.11 -52.93 -0.06 1.33 16 7 C -0.50 -25.79 7.80 25.60 0.20 -25.59 16 8 H 0.06 2.90 7.82 -2.91 -0.02 2.88 16 9 C 0.03 1.59 5.42 84.65 0.46 2.04 16 10 N -0.91 -49.75 13.11 21.45 0.28 -49.47 16 11 Si 0.94 41.83 29.55 68.60 2.03 43.86 16 12 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 13 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 14 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 15 C -0.18 -7.90 8.48 30.59 0.26 -7.64 16 16 C -0.18 -8.28 9.70 30.59 0.30 -7.98 16 17 C 0.50 18.40 4.99 71.24 0.36 18.76 16 18 O -0.56 -21.72 16.81 21.96 0.37 -21.35 16 19 O -0.50 -16.31 12.77 -51.37 -0.66 -16.97 16 20 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 21 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.04 1.16 7.26 -2.38 -0.02 1.14 16 23 H 0.08 2.50 8.13 -2.39 -0.02 2.48 16 24 H 0.07 2.12 7.69 -2.38 -0.02 2.10 16 25 H 0.07 3.21 8.12 -2.39 -0.02 3.19 16 26 H 0.04 1.57 8.10 -2.39 -0.02 1.55 16 27 H 0.26 13.72 8.32 -92.71 -0.77 12.95 16 28 H 0.08 3.33 8.14 -2.38 -0.02 3.31 16 29 H 0.07 2.83 7.89 -2.39 -0.02 2.81 16 30 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16 31 H 0.06 3.01 8.14 -2.39 -0.02 2.99 16 32 H 0.42 9.13 9.10 -74.06 -0.67 8.45 16 Total: -1.00 -59.62 273.16 4.93 -54.69 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.43 Total: 19.73 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: 2.48 Total: -30.50 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.28 Total: -49.47 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -0.29 Total: -38.32 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -59.62 4.93 -54.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691692821.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.934 kcal (2) G-P(sol) polarization free energy of solvation -59.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds