Wall clock time and date at job start Mon Mar 30 2020 02:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47033 * 2 1 4 4 C 1.53001 * 109.47130 * 119.99346 * 2 1 3 5 5 C 1.52996 * 109.47377 * 305.70938 * 4 2 1 6 6 C 1.50699 * 115.55478 * 293.59969 * 5 4 2 7 7 H 1.08006 * 119.99545 * 359.05175 * 6 5 4 8 8 C 1.37872 * 120.00794 * 178.78378 * 6 5 4 9 9 N 1.31522 * 119.99517 * 0.27066 * 8 6 5 10 10 Si 1.86791 * 120.00319 * 180.27350 * 8 6 5 11 11 H 1.48500 * 109.47475 * 89.99864 * 10 8 6 12 12 H 1.48506 * 109.46885 * 209.99744 * 10 8 6 13 13 H 1.48498 * 109.47292 * 329.99607 * 10 8 6 14 14 C 1.53002 * 117.49966 * 79.26348 * 5 4 2 15 15 C 1.53005 * 117.50192 * 147.92467 * 5 4 2 16 16 C 1.50691 * 109.47474 * 239.99565 * 2 1 3 17 17 O 1.20829 * 120.00151 * 240.00209 * 16 2 1 18 18 O 1.34229 * 120.00234 * 60.00070 * 16 2 1 19 19 H 1.08995 * 109.47308 * 300.00157 * 1 2 3 20 20 H 1.08992 * 109.46806 * 60.00326 * 1 2 3 21 21 H 1.09001 * 109.47031 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46813 * 170.20993 * 3 2 1 23 23 H 1.08997 * 109.46462 * 290.20264 * 3 2 1 24 24 H 1.08995 * 109.47244 * 50.20228 * 3 2 1 25 25 H 1.08997 * 109.47259 * 185.70659 * 4 2 1 26 26 H 1.09005 * 109.47337 * 65.70905 * 4 2 1 27 27 H 0.97001 * 119.99596 * 180.02562 * 9 8 6 28 28 H 1.08998 * 117.50450 * 215.00583 * 14 5 4 29 29 H 1.09003 * 117.49793 * 0.02856 * 14 5 4 30 30 H 1.09004 * 117.49745 * 359.97438 * 15 5 4 31 31 H 1.08992 * 117.49999 * 144.97751 * 15 5 4 32 32 H 0.96700 * 117.00415 * 180.02562 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.4163 -0.0874 2.4944 6 6 1.8341 1.3320 2.7801 7 1 2.5423 1.8272 2.1321 8 6 1.3083 2.0004 3.8653 9 7 0.4460 1.3974 4.6543 10 14 1.8205 3.7624 4.2149 11 1 0.9027 4.6937 3.5110 12 1 1.7571 4.0155 5.6768 13 1 3.2090 3.9788 3.7349 14 6 -0.0184 -0.4858 2.8466 15 6 1.1489 -0.9999 3.6931 16 6 2.0324 -0.7104 -1.2303 17 8 2.7271 -1.6928 -1.1194 18 8 1.7082 -0.2520 -2.4495 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 3.1159 1.4475 0.1747 23 1 1.8265 1.9033 -0.9644 24 1 1.5410 2.0044 0.7895 25 1 3.1252 -0.6335 1.3019 26 1 1.7626 -1.7741 1.1998 27 1 0.0758 1.8678 5.4176 28 1 -0.6599 0.2786 3.2849 29 1 -0.5176 -1.1998 2.1915 30 1 1.4170 -2.0518 3.5945 31 1 1.2756 -0.5737 4.6882 32 1 2.0537 -0.7412 -3.2087 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691692874.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:38 Heat of formation + Delta-G solvation = -85.989664 kcal Electronic energy + Delta-G solvation = -14992.656170 eV Core-core repulsion = 12532.488607 eV Total energy + Delta-G solvation = -2460.167563 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.57617 -39.20605 -37.04247 -35.73700 -33.45554 -28.97068 -27.98878 -27.19321 -25.07556 -22.52867 -21.54049 -19.93999 -18.84046 -17.94080 -17.17335 -16.80645 -16.56217 -15.40445 -14.97774 -14.66131 -14.40398 -14.08679 -13.32425 -13.12715 -13.02295 -12.86457 -12.49940 -12.47130 -12.39371 -11.97060 -11.83412 -11.76848 -11.60064 -11.29696 -11.11156 -10.67318 -10.03729 -9.93229 -7.93177 -6.01999 1.26126 1.46898 1.50515 1.57834 2.19378 2.48710 3.12046 3.76560 4.01221 4.12150 4.20139 4.57433 4.61059 4.71557 4.88379 4.94319 4.98816 5.06690 5.12540 5.19988 5.29194 5.40998 5.52707 5.57174 5.64743 5.69312 5.74475 6.03608 6.27075 6.53034 6.99080 7.07605 7.53426 9.01130 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.038097 B = 0.010837 C = 0.009482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.786872 B = 2583.237427 C = 2952.298182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.037 4.037 3 C -0.143 4.143 4 C -0.048 4.048 5 C 0.020 3.980 6 C -0.488 4.488 7 H 0.081 0.919 8 C 0.013 3.987 9 N -0.901 5.901 10 Si 0.948 3.052 11 H -0.274 1.274 12 H -0.295 1.295 13 H -0.268 1.268 14 C -0.173 4.173 15 C -0.205 4.205 16 C 0.495 3.505 17 O -0.554 6.554 18 O -0.503 6.503 19 H 0.077 0.923 20 H 0.075 0.925 21 H 0.050 0.950 22 H 0.047 0.953 23 H 0.069 0.931 24 H 0.095 0.905 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.255 0.745 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.114 0.020 -10.568 10.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.038 4.038 3 C -0.199 4.199 4 C -0.086 4.086 5 C 0.019 3.981 6 C -0.525 4.525 7 H 0.099 0.901 8 C -0.186 4.186 9 N -0.540 5.540 10 Si 0.775 3.225 11 H -0.200 1.200 12 H -0.221 1.221 13 H -0.193 1.193 14 C -0.211 4.211 15 C -0.243 4.243 16 C 0.339 3.661 17 O -0.444 6.444 18 O -0.316 6.316 19 H 0.096 0.904 20 H 0.094 0.906 21 H 0.069 0.931 22 H 0.066 0.934 23 H 0.088 0.912 24 H 0.113 0.887 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 0.048 0.023 -10.057 10.057 hybrid contribution 0.454 0.190 0.271 0.562 sum 0.502 0.213 -9.786 9.801 Atomic orbital electron populations 1.21932 0.91139 1.01995 1.03925 1.20327 0.98482 0.97047 0.87984 1.22226 1.00873 0.93142 1.03701 1.20878 0.98891 0.96749 0.92090 1.19026 0.94656 0.93554 0.90838 1.21207 1.24521 0.96537 1.10198 0.90132 1.25695 0.95412 1.01362 0.96088 1.70185 1.30537 1.37164 1.16088 0.85700 0.78933 0.81171 0.76713 1.19978 1.22101 1.19284 1.22757 0.93132 1.02148 1.03071 1.22777 1.06853 0.95577 0.99050 1.23826 0.75545 0.81310 0.85432 1.90655 1.37878 1.28016 1.87899 1.84520 1.71803 1.58760 1.16537 0.90380 0.90626 0.93098 0.93393 0.91205 0.88652 0.93293 0.93750 0.93570 0.89388 0.91940 0.92843 0.90298 0.71558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.38 7.08 71.98 0.51 -3.87 16 2 C -0.04 -1.31 0.74 -52.93 -0.04 -1.35 16 3 C -0.14 -4.85 6.92 71.98 0.50 -4.36 16 4 C -0.05 -2.02 3.70 30.59 0.11 -1.91 16 5 C 0.02 0.93 1.58 -52.93 -0.08 0.84 16 6 C -0.49 -24.34 7.01 25.60 0.18 -24.16 16 7 H 0.08 3.84 5.32 -2.91 -0.02 3.82 16 8 C 0.01 0.69 5.27 84.65 0.45 1.14 16 9 N -0.90 -48.77 8.59 21.45 0.18 -48.59 16 10 Si 0.95 41.14 29.54 68.60 2.03 43.17 16 11 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 12 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 13 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 14 C -0.17 -8.19 6.95 30.62 0.21 -7.97 16 15 C -0.20 -10.17 9.35 30.62 0.29 -9.89 16 16 C 0.49 15.96 6.92 71.23 0.49 16.46 16 17 O -0.55 -21.00 16.66 21.95 0.37 -20.63 16 18 O -0.50 -11.86 13.05 -51.40 -0.67 -12.53 16 19 H 0.08 2.95 5.55 -2.39 -0.01 2.94 16 20 H 0.07 2.11 8.11 -2.39 -0.02 2.09 16 21 H 0.05 1.61 7.78 -2.39 -0.02 1.59 16 22 H 0.05 1.64 7.79 -2.39 -0.02 1.62 16 23 H 0.07 1.99 7.88 -2.39 -0.02 1.98 16 24 H 0.09 3.68 5.23 -2.39 -0.01 3.66 16 25 H 0.05 2.11 8.11 -2.39 -0.02 2.09 16 26 H 0.04 1.85 7.87 -2.38 -0.02 1.84 16 27 H 0.25 13.40 8.31 -92.71 -0.77 12.63 16 28 H 0.09 4.62 6.19 -2.39 -0.01 4.60 16 29 H 0.06 2.66 7.10 -2.39 -0.02 2.64 16 30 H 0.05 2.46 8.14 -2.38 -0.02 2.44 16 31 H 0.08 4.37 6.38 -2.39 -0.02 4.35 16 32 H 0.42 5.76 9.10 -74.06 -0.67 5.09 16 Total: -1.00 -59.03 253.56 4.98 -54.05 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.46 Total: 19.60 kcal Atomic # 6 Polarization: -37.68 SS G_CDS: 2.62 Total: -35.07 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.18 Total: -48.59 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -0.31 Total: -33.16 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -59.03 4.98 -54.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691692874.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.941 kcal (2) G-P(sol) polarization free energy of solvation -59.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds