Wall clock time and date at job start Mon Mar 30 2020 02:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00019 * 2 1 4 4 H 1.48497 * 109.47074 * 269.99885 * 3 2 1 5 5 H 1.48502 * 109.46884 * 29.99779 * 3 2 1 6 6 H 1.48496 * 109.47031 * 149.99640 * 3 2 1 7 7 C 1.37878 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00177 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00237 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47546 * 180.02562 * 9 7 2 11 11 N 1.46495 * 109.47045 * 179.97438 * 10 9 7 12 12 C 1.34786 * 119.99833 * 179.97438 * 11 10 9 13 13 O 1.21285 * 119.99709 * 0.02562 * 12 11 10 14 14 C 1.50695 * 119.99989 * 180.02562 * 12 11 10 15 15 C 1.53776 * 113.61278 * 179.97438 * 14 12 11 16 16 C 1.53778 * 87.08414 * 219.93467 * 15 14 12 17 17 N 1.46905 * 113.61486 * 139.98223 * 16 15 14 18 18 C 1.53780 * 113.68874 * 82.46585 * 14 12 11 19 19 H 0.96998 * 119.99721 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47240 * 59.99748 * 9 7 2 21 21 H 1.09007 * 109.47003 * 300.00292 * 9 7 2 22 22 H 1.09002 * 109.46783 * 59.99981 * 10 9 7 23 23 H 1.09003 * 109.46451 * 300.00066 * 10 9 7 24 24 H 0.97001 * 120.00326 * 359.97438 * 11 10 9 25 25 H 1.08991 * 112.85278 * 311.19839 * 14 12 11 26 26 H 1.09008 * 113.61416 * 105.39095 * 15 14 12 27 27 H 1.08997 * 113.61952 * 334.48943 * 15 14 12 28 28 H 1.09002 * 113.61610 * 270.80493 * 16 15 14 29 29 H 1.00901 * 110.99869 * 180.02562 * 17 16 15 30 30 H 1.00896 * 110.99543 * 303.95673 * 17 16 15 31 31 H 1.08998 * 113.61718 * 25.44212 * 18 14 12 32 32 H 1.09006 * 113.61690 * 254.53746 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 0.0001 12 6 2.1868 -6.0981 -0.0003 13 8 3.3996 -6.0980 -0.0007 14 6 1.4333 -7.4031 -0.0003 15 6 2.3455 -8.6411 -0.0014 16 6 1.3504 -9.2763 -0.9868 17 7 1.9947 -10.0422 -2.0621 18 6 0.9640 -7.8456 -1.3963 19 1 -0.4850 0.8401 -0.0004 20 1 0.6241 -2.5568 -0.8903 21 1 0.6248 -2.5571 0.8897 22 1 2.8720 -3.6043 0.8895 23 1 2.8720 -3.6043 -0.8906 24 1 0.5428 -4.9308 0.0008 25 1 0.6490 -7.4390 0.7557 26 1 2.3919 -9.1502 0.9613 27 1 3.3298 -8.4578 -0.4322 28 1 0.5444 -9.8257 -0.5002 29 1 1.3074 -10.4403 -2.6843 30 1 2.6528 -9.4698 -2.5694 31 1 1.5707 -7.4449 -2.2083 32 1 -0.1055 -7.7124 -1.5600 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693572395.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:48 Heat of formation + Delta-G solvation = -61.748158 kcal Electronic energy + Delta-G solvation = -13678.110398 eV Core-core repulsion = 11251.286776 eV Total energy + Delta-G solvation = -2426.823621 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.32551 -38.95940 -36.57024 -34.82821 -32.93733 -31.51531 -27.43645 -26.58518 -25.48564 -22.88015 -21.61443 -20.45352 -18.65606 -18.16775 -17.03293 -16.81194 -16.49226 -16.45586 -15.47127 -15.37126 -14.76221 -14.33316 -14.11449 -13.47239 -13.43016 -13.24568 -12.94427 -12.56423 -12.26568 -12.10935 -12.00772 -11.69578 -11.52117 -11.44412 -10.72023 -10.62488 -10.03735 -9.54620 -8.26300 -6.37101 1.40616 1.41038 1.52669 1.63072 2.27059 2.45548 3.08414 3.47094 3.59248 3.63255 3.90610 4.01387 4.20829 4.44731 4.51260 4.64062 4.75032 4.81240 4.82400 4.99543 5.07882 5.27698 5.40396 5.49214 5.54926 5.76357 6.13970 6.22105 6.61728 6.64833 6.75951 7.29076 7.32505 8.85554 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.077546 B = 0.004956 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.990070 B = 5648.160928 C = 5793.896811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.550 4.550 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.139 3.861 11 N -0.716 5.716 12 C 0.511 3.489 13 O -0.595 6.595 14 C -0.133 4.133 15 C -0.116 4.116 16 C 0.087 3.913 17 N -0.846 5.846 18 C -0.155 4.155 19 H 0.266 0.734 20 H 0.009 0.991 21 H 0.009 0.991 22 H 0.043 0.957 23 H 0.043 0.957 24 H 0.411 0.589 25 H 0.142 0.858 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.128 0.872 29 H 0.353 0.647 30 H 0.343 0.657 31 H 0.068 0.932 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.983 -16.389 -2.273 16.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.588 4.588 8 H 0.075 0.925 9 C -0.014 4.014 10 C 0.015 3.985 11 N -0.367 5.367 12 C 0.299 3.701 13 O -0.476 6.476 14 C -0.154 4.154 15 C -0.155 4.155 16 C -0.025 4.025 17 N -0.375 5.375 18 C -0.195 4.195 19 H 0.075 0.925 20 H 0.027 0.973 21 H 0.027 0.973 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.247 0.753 25 H 0.159 0.841 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.146 0.854 29 H 0.167 0.833 30 H 0.156 0.844 31 H 0.087 0.913 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.993 -16.751 -1.698 16.866 hybrid contribution -0.410 2.018 -0.576 2.138 sum -1.404 -14.733 -2.274 14.973 Atomic orbital electron populations 1.70053 1.07531 1.28062 1.50906 1.25864 0.95799 1.03075 0.94295 0.85443 0.78615 0.78416 0.78569 1.19701 1.20367 1.19141 1.21472 0.93541 0.92033 1.51749 0.92471 1.19127 0.94179 0.91733 0.96360 1.21206 0.95103 0.82704 0.99503 1.46197 1.11081 1.05589 1.73784 1.21296 0.87813 0.86422 0.74590 1.90638 1.16264 1.88419 1.52257 1.22739 1.00562 0.90020 1.02079 1.22971 0.98045 0.93519 1.00966 1.22818 0.96282 0.90329 0.93094 1.58646 1.21639 1.39698 1.17499 1.23748 1.02904 0.98727 0.94097 0.92472 0.97288 0.97259 0.93846 0.93900 0.75345 0.84064 0.89902 0.91265 0.85400 0.83276 0.84423 0.91303 0.88504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.29 13.29 21.45 0.28 -54.00 16 2 C 0.01 0.48 5.46 84.65 0.46 0.94 16 3 Si 0.97 43.70 29.54 68.60 2.03 45.72 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.55 -31.02 9.11 25.60 0.23 -30.78 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.02 1.19 5.09 29.85 0.15 1.35 16 10 C 0.14 6.11 5.61 86.38 0.48 6.59 16 11 N -0.72 -25.03 5.56 -463.06 -2.57 -27.61 16 12 C 0.51 17.17 7.36 87.65 0.65 17.81 16 13 O -0.59 -25.28 15.90 -3.04 -0.05 -25.33 16 14 C -0.13 -2.92 4.15 -11.02 -0.05 -2.97 16 15 C -0.12 -2.53 7.19 31.12 0.22 -2.30 16 16 C 0.09 1.37 5.01 45.43 0.23 1.60 16 17 N -0.85 -13.14 9.64 -166.53 -1.60 -14.75 16 18 C -0.15 -2.76 7.34 31.11 0.23 -2.53 16 19 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 20 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 21 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 22 H 0.04 2.00 8.14 -2.39 -0.02 1.99 16 23 H 0.04 1.97 8.14 -2.39 -0.02 1.96 16 24 H 0.41 12.12 8.47 -92.71 -0.79 11.34 16 25 H 0.14 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 27 H 0.07 1.91 7.43 -2.39 -0.02 1.89 16 28 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.35 3.95 9.08 -89.69 -0.81 3.13 16 30 H 0.34 5.63 8.84 -89.70 -0.79 4.84 16 31 H 0.07 1.47 7.99 -2.39 -0.02 1.45 16 32 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -68.23 274.55 -0.56 -68.79 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -1.26 Total: 17.47 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 2.61 Total: -10.29 kcal Atomic # 7 Polarization: -92.47 SS G_CDS: -3.89 Total: -96.36 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.05 Total: -25.33 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -68.23 -0.56 -68.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693572395.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.041 kcal (2) G-P(sol) polarization free energy of solvation -68.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds