Wall clock time and date at job start Mon Mar 30 2020 02:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 9 13 13 O 1.21278 * 120.00071 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99944 * 180.02562 * 12 11 10 15 15 H 1.08997 * 112.84668 * 309.66618 * 14 12 11 16 16 C 1.53780 * 113.61472 * 80.86437 * 14 12 11 17 17 C 1.53952 * 87.02060 * 139.95171 * 16 14 12 18 18 H 1.08998 * 113.61389 * 89.19725 * 17 16 14 19 19 N 1.46900 * 113.66898 * 220.06630 * 17 16 14 20 20 C 1.53779 * 87.11182 * 334.63914 * 17 16 14 21 21 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 23 23 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 24 24 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 25 25 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 26 26 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 27 27 H 1.09004 * 113.61595 * 254.53034 * 16 14 12 28 28 H 1.09002 * 113.61855 * 25.43395 * 16 14 12 29 29 H 1.00897 * 110.99809 * 277.56160 * 19 17 16 30 30 H 1.00906 * 110.99766 * 41.51540 * 19 17 16 31 31 H 1.09011 * 113.61452 * 270.81252 * 20 17 16 32 32 H 1.09002 * 113.69669 * 139.91913 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 2.1868 -6.0980 0.0024 13 8 3.3996 -6.0979 0.0019 14 6 1.4333 -7.4031 0.0023 15 1 0.6662 -7.4489 0.7753 16 6 0.9320 -7.8250 -1.3889 17 6 1.3295 -9.2626 -1.0078 18 1 0.5339 -9.8187 -0.5120 19 7 1.9511 -10.0136 -2.1067 20 6 2.3451 -8.6409 -0.0347 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6247 -2.5564 0.8919 24 1 2.8714 -3.6047 -0.8890 25 1 2.8726 -3.6039 0.8910 26 1 0.5429 -4.9308 0.0020 27 1 -0.1408 -7.6894 -1.5262 28 1 1.5201 -7.4122 -2.2087 29 1 1.2508 -10.4036 -2.7196 30 1 2.5986 -9.4343 -2.6198 31 1 3.3203 -8.4515 -0.4835 32 1 2.4127 -9.1622 0.9202 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693593087.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:37 Heat of formation + Delta-G solvation = -37.627991 kcal Electronic energy + Delta-G solvation = -13678.995668 eV Core-core repulsion = 11253.217976 eV Total energy + Delta-G solvation = -2425.777692 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.14773 -37.77956 -34.82432 -32.85752 -32.06973 -29.67644 -25.90271 -25.66301 -23.96286 -21.05092 -20.39458 -19.42353 -17.11835 -16.40782 -16.19898 -15.40136 -15.03571 -14.56619 -14.33448 -14.09613 -13.24706 -12.95160 -12.58561 -12.37895 -12.30785 -11.24346 -11.20626 -11.09953 -11.04846 -10.67881 -10.62628 -10.33459 -9.78591 -9.45309 -9.18650 -8.80747 -8.54551 -8.35741 -6.10914 -4.13851 2.98452 3.28370 3.34462 3.38614 3.69528 4.28125 4.40163 4.49718 4.54717 4.73570 4.78105 5.26160 5.34946 5.40906 5.57174 5.65218 5.82833 5.95527 6.24980 6.33735 6.35447 6.72704 6.90436 6.93745 7.23021 7.50187 7.59932 7.87312 8.03626 8.26613 8.67621 8.92262 9.51134 11.00712 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.076741 B = 0.004967 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.777134 B = 5635.678657 C = 5782.831391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.120 3.880 11 N -0.721 5.721 12 C 0.514 3.486 13 O -0.551 6.551 14 C -0.138 4.138 15 H 0.111 0.889 16 C -0.161 4.161 17 C 0.071 3.929 18 H 0.104 0.896 19 N -0.839 5.839 20 C -0.108 4.108 21 H 0.262 0.738 22 H 0.022 0.978 23 H 0.022 0.978 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.397 0.603 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.340 0.660 30 H 0.344 0.656 31 H 0.096 0.904 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.336 -15.625 -2.219 15.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.370 5.370 12 C 0.299 3.701 13 O -0.430 6.430 14 C -0.160 4.160 15 H 0.130 0.870 16 C -0.202 4.202 17 C -0.041 4.041 18 H 0.122 0.878 19 N -0.367 5.367 20 C -0.147 4.147 21 H 0.072 0.928 22 H 0.040 0.960 23 H 0.041 0.959 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.231 0.769 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.153 0.847 30 H 0.158 0.842 31 H 0.115 0.885 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.305 -15.964 -1.647 16.052 hybrid contribution -0.647 1.837 -0.569 2.029 sum -0.952 -14.127 -2.216 14.331 Atomic orbital electron populations 1.69952 1.06107 1.26889 1.50405 1.24996 0.94889 0.99420 0.94954 0.86509 0.79859 0.82970 0.78212 1.20547 1.21139 1.19704 1.21062 0.93253 0.90415 1.51350 0.92260 1.19322 0.94197 0.91172 0.97798 1.21717 0.96061 0.81723 1.00690 1.46349 1.10488 1.06584 1.73601 1.20363 0.88063 0.85305 0.76357 1.90657 1.14069 1.87748 1.50516 1.22605 1.00158 0.93454 0.99736 0.87050 1.23785 1.01802 0.98470 0.96097 1.22906 0.96907 0.90733 0.93542 0.87825 1.58661 1.21800 1.40404 1.15883 1.22937 0.98677 0.93267 0.99809 0.92836 0.96004 0.95946 0.92709 0.92611 0.76946 0.90680 0.89720 0.84749 0.84239 0.88534 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.12 2.60 5.61 -4.04 -0.02 2.58 16 11 N -0.72 -12.69 5.56 -60.29 -0.33 -13.03 16 12 C 0.51 8.74 7.35 -10.98 -0.08 8.66 16 13 O -0.55 -11.53 15.91 5.56 0.09 -11.44 16 14 C -0.14 -1.66 4.14 -90.96 -0.38 -2.03 16 15 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 16 C -0.16 -1.63 7.36 -25.83 -0.19 -1.82 16 17 C 0.07 0.66 5.01 -66.81 -0.33 0.33 16 18 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 19 N -0.84 -7.40 9.64 -3.90 -0.04 -7.43 16 20 C -0.11 -1.26 7.19 -25.92 -0.19 -1.44 16 21 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 22 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.40 6.05 8.47 -40.82 -0.35 5.71 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.96 7.99 -51.93 -0.42 0.54 16 29 H 0.34 2.33 9.08 -39.29 -0.36 1.98 16 30 H 0.34 3.02 8.85 -39.29 -0.35 2.68 16 31 H 0.10 1.33 7.45 -51.92 -0.39 0.94 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 274.59 15.07 4.14 4.14 Total: -1.00 -31.67 274.59 -6.95 -38.62 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -4.78 Total: 5.08 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -1.74 Total: -6.89 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 0.36 Total: -45.91 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.67 -6.95 -38.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693593087.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.997 kcal (2) G-P(sol) polarization free energy of solvation -31.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds