Wall clock time and date at job start Mon Mar 30 2020 02:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 9 13 13 O 1.21278 * 120.00071 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99944 * 180.02562 * 12 11 10 15 15 H 1.08997 * 112.84668 * 309.66618 * 14 12 11 16 16 C 1.53780 * 113.61472 * 80.86437 * 14 12 11 17 17 C 1.53952 * 87.02060 * 139.95171 * 16 14 12 18 18 H 1.08998 * 113.61389 * 89.19725 * 17 16 14 19 19 N 1.46900 * 113.66898 * 220.06630 * 17 16 14 20 20 C 1.53779 * 87.11182 * 334.63914 * 17 16 14 21 21 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 23 23 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 24 24 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 25 25 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 26 26 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 27 27 H 1.09004 * 113.61595 * 254.53034 * 16 14 12 28 28 H 1.09002 * 113.61855 * 25.43395 * 16 14 12 29 29 H 1.00897 * 110.99809 * 277.56160 * 19 17 16 30 30 H 1.00906 * 110.99766 * 41.51540 * 19 17 16 31 31 H 1.09011 * 113.61452 * 270.81252 * 20 17 16 32 32 H 1.09002 * 113.69669 * 139.91913 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 2.1868 -6.0980 0.0024 13 8 3.3996 -6.0979 0.0019 14 6 1.4333 -7.4031 0.0023 15 1 0.6662 -7.4489 0.7753 16 6 0.9320 -7.8250 -1.3889 17 6 1.3295 -9.2626 -1.0078 18 1 0.5339 -9.8187 -0.5120 19 7 1.9511 -10.0136 -2.1067 20 6 2.3451 -8.6409 -0.0347 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6247 -2.5564 0.8919 24 1 2.8714 -3.6047 -0.8890 25 1 2.8726 -3.6039 0.8910 26 1 0.5429 -4.9308 0.0020 27 1 -0.1408 -7.6894 -1.5262 28 1 1.5201 -7.4122 -2.2087 29 1 1.2508 -10.4036 -2.7196 30 1 2.5986 -9.4343 -2.6198 31 1 3.3203 -8.4515 -0.4835 32 1 2.4127 -9.1622 0.9202 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693593087.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:37 Heat of formation + Delta-G solvation = -61.918665 kcal Electronic energy + Delta-G solvation = -13680.048991 eV Core-core repulsion = 11253.217976 eV Total energy + Delta-G solvation = -2426.831015 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.31934 -38.94858 -36.57124 -34.82879 -32.93800 -31.51414 -27.43547 -26.58336 -25.48405 -22.87987 -21.61422 -20.45363 -18.65434 -18.16562 -17.03530 -16.81073 -16.49283 -16.45750 -15.47692 -15.37023 -14.75067 -14.33332 -14.11327 -13.47194 -13.42955 -13.24560 -12.94466 -12.56405 -12.26617 -12.10891 -12.00462 -11.69694 -11.52424 -11.44580 -10.71834 -10.62521 -10.03754 -9.54526 -8.26273 -6.37095 1.40605 1.41028 1.52665 1.63373 2.27017 2.45523 3.08433 3.46690 3.59281 3.63158 3.90692 4.01317 4.20826 4.44749 4.51358 4.64095 4.75014 4.81222 4.82376 4.99727 5.08098 5.27734 5.40394 5.49179 5.54953 5.76349 6.13950 6.22090 6.61755 6.64814 6.75959 7.29100 7.32511 8.85571 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.076741 B = 0.004967 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.777134 B = 5635.678657 C = 5782.831391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.550 4.550 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.139 3.861 11 N -0.716 5.716 12 C 0.511 3.489 13 O -0.595 6.595 14 C -0.132 4.132 15 H 0.142 0.858 16 C -0.155 4.155 17 C 0.087 3.913 18 H 0.128 0.872 19 N -0.846 5.846 20 C -0.116 4.116 21 H 0.266 0.734 22 H 0.009 0.991 23 H 0.009 0.991 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.411 0.589 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.353 0.647 30 H 0.343 0.657 31 H 0.068 0.932 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.036 -16.358 -2.271 16.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.588 4.588 8 H 0.075 0.925 9 C -0.014 4.014 10 C 0.015 3.985 11 N -0.366 5.366 12 C 0.299 3.701 13 O -0.476 6.476 14 C -0.154 4.154 15 H 0.159 0.841 16 C -0.195 4.195 17 C -0.025 4.025 18 H 0.146 0.854 19 N -0.375 5.375 20 C -0.155 4.155 21 H 0.075 0.925 22 H 0.027 0.973 23 H 0.028 0.972 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.247 0.753 27 H 0.115 0.885 28 H 0.087 0.913 29 H 0.167 0.833 30 H 0.156 0.844 31 H 0.087 0.913 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.034 -16.727 -1.710 16.846 hybrid contribution -0.421 2.026 -0.556 2.142 sum -1.454 -14.701 -2.266 14.946 Atomic orbital electron populations 1.70049 1.07532 1.28068 1.50901 1.25862 0.95796 1.03072 0.94294 0.85444 0.78618 0.78422 0.78569 1.19702 1.20366 1.19142 1.21473 0.93540 0.92032 1.51755 0.92470 1.19127 0.94178 0.91732 0.96360 1.21207 0.95102 0.82702 0.99502 1.46194 1.11079 1.05587 1.73789 1.21301 0.87812 0.86430 0.74589 1.90637 1.16273 1.88422 1.52254 1.22743 1.00472 0.90055 1.02107 0.84053 1.23786 1.02791 0.98803 0.94144 1.22851 0.96239 0.90437 0.92981 0.85422 1.58642 1.22283 1.40272 1.16278 1.22966 0.97956 0.93607 1.00952 0.92469 0.97296 0.97248 0.93911 0.93838 0.75350 0.88475 0.91304 0.83269 0.84418 0.91297 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.28 13.29 21.45 0.28 -54.00 16 2 C 0.01 0.49 5.46 84.66 0.46 0.95 16 3 Si 0.97 43.69 29.54 68.60 2.03 45.72 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.55 -31.02 9.11 25.60 0.23 -30.78 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.02 1.19 5.09 29.85 0.15 1.35 16 10 C 0.14 6.11 5.61 86.38 0.48 6.59 16 11 N -0.72 -25.03 5.56 -463.05 -2.57 -27.60 16 12 C 0.51 17.16 7.35 87.66 0.64 17.81 16 13 O -0.59 -25.30 15.91 -3.02 -0.05 -25.34 16 14 C -0.13 -2.92 4.14 -11.01 -0.05 -2.96 16 15 H 0.14 2.33 8.14 -2.39 -0.02 2.31 16 16 C -0.16 -2.76 7.36 31.18 0.23 -2.53 16 17 C 0.09 1.38 5.01 45.50 0.23 1.60 16 18 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 19 N -0.85 -13.14 9.64 -166.26 -1.60 -14.74 16 20 C -0.12 -2.52 7.19 31.12 0.22 -2.30 16 21 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 22 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 23 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 24 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.41 12.12 8.47 -92.71 -0.79 11.34 16 27 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.07 1.47 7.99 -2.39 -0.02 1.45 16 29 H 0.35 3.95 9.08 -89.70 -0.81 3.13 16 30 H 0.34 5.63 8.85 -89.69 -0.79 4.83 16 31 H 0.07 1.90 7.45 -2.38 -0.02 1.88 16 32 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -68.23 274.59 -0.56 -68.78 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -1.26 Total: 17.46 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: 2.61 Total: -10.28 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -3.89 Total: -96.34 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.05 Total: -25.34 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -68.23 -0.56 -68.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693593087.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.865 kcal (2) G-P(sol) polarization free energy of solvation -68.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds