Wall clock time and date at job start Mon Mar 30 2020 02:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47140 * 2 1 4 4 H 1.08997 * 109.47122 * 304.77184 * 3 2 1 5 5 C 1.50698 * 109.47419 * 184.76711 * 3 2 1 6 6 H 1.07997 * 120.00128 * 245.09004 * 5 3 2 7 7 C 1.37877 * 119.99497 * 65.08892 * 5 3 2 8 8 N 1.31516 * 120.00295 * 8.84599 * 7 5 3 9 9 Si 1.86808 * 119.99715 * 188.84162 * 7 5 3 10 10 H 1.48499 * 109.46921 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.47147 * 300.00413 * 9 7 5 12 12 H 1.48499 * 109.46717 * 60.00335 * 9 7 5 13 13 C 1.50703 * 109.46827 * 64.76997 * 3 2 1 14 14 O 1.20763 * 120.00085 * 27.54977 * 13 3 2 15 15 C 1.50701 * 119.99999 * 207.55493 * 13 3 2 16 16 H 1.08999 * 110.27277 * 319.35839 * 15 13 3 17 17 C 1.54944 * 110.30893 * 81.55887 * 15 13 3 18 18 C 1.55309 * 100.94032 * 155.36233 * 17 15 13 19 19 C 1.54384 * 102.25283 * 325.86330 * 18 17 15 20 20 O 1.43241 * 107.58679 * 21.36033 * 19 18 17 21 21 H 1.09004 * 109.46685 * 184.13142 * 1 2 3 22 22 H 1.08990 * 109.47459 * 304.13611 * 1 2 3 23 23 H 1.09001 * 109.47333 * 64.13935 * 1 2 3 24 24 H 1.09002 * 109.47786 * 240.00245 * 2 1 3 25 25 H 1.09003 * 109.47513 * 120.00223 * 2 1 3 26 26 H 0.96997 * 119.99846 * 357.17444 * 8 7 5 27 27 H 1.08995 * 111.12435 * 273.27690 * 17 15 13 28 28 H 1.08998 * 111.12739 * 37.44563 * 17 15 13 29 29 H 1.09000 * 110.84730 * 207.67856 * 18 17 15 30 30 H 1.08997 * 111.02260 * 84.13332 * 18 17 15 31 31 H 1.09001 * 109.82949 * 261.84660 * 19 18 17 32 32 H 1.08994 * 109.83403 * 140.87193 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6085 1.9805 -0.8441 5 6 3.5423 1.4443 -0.1181 6 1 4.1475 1.8152 0.6959 7 6 4.1441 0.9723 -1.2653 8 7 3.4136 0.6841 -2.3203 9 14 5.9971 0.7422 -1.3211 10 1 6.3920 0.2279 -2.6570 11 1 6.6654 2.0454 -1.0754 12 1 6.4069 -0.2292 -0.2753 13 6 1.6364 2.1180 1.2853 14 8 1.4716 1.4624 2.2861 15 6 1.4383 3.6115 1.3218 16 1 2.2113 4.1094 0.7365 17 6 0.0325 3.9808 0.7850 18 6 -0.2004 5.3477 1.4846 19 6 0.5127 5.1481 2.8392 20 8 1.4580 4.0841 2.6782 21 1 -0.3633 -1.0251 0.0740 22 1 -0.3634 0.5766 0.8505 23 1 -0.3634 0.4482 -0.9247 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.4479 0.7645 -2.2782 27 1 0.0426 4.0912 -0.2993 28 1 -0.7119 3.2481 1.0966 29 1 -1.2647 5.5326 1.6300 30 1 0.2590 6.1591 0.9201 31 1 -0.2160 4.8826 3.6051 32 1 1.0315 6.0639 3.1225 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694888182.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:44 Heat of formation + Delta-G solvation = -105.008909 kcal Electronic energy + Delta-G solvation = -14694.114033 eV Core-core repulsion = 12233.121733 eV Total energy + Delta-G solvation = -2460.992299 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.70932 -37.77401 -34.61445 -32.00920 -31.49260 -29.82950 -27.47445 -23.88957 -23.05163 -21.55424 -20.80976 -18.72413 -17.10083 -16.40056 -16.02358 -14.99501 -14.71638 -13.84048 -13.78745 -13.43214 -13.15679 -12.62108 -12.36323 -12.14939 -11.71656 -11.63646 -11.31846 -11.19001 -10.82462 -10.76155 -10.62010 -10.30772 -10.11603 -9.88976 -9.47930 -8.76394 -8.39399 -8.27895 -6.49183 -4.22485 2.87578 3.40248 3.43685 3.61167 4.02839 4.45183 4.55238 4.78974 4.93499 5.22867 5.26607 5.39915 5.56442 5.72170 5.78788 5.93055 5.96630 5.98371 6.02592 6.20511 6.21267 6.40539 6.68740 6.71103 6.91251 7.23035 7.27634 7.39483 7.95810 8.28139 8.51720 8.71597 9.47572 10.88961 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.032825 B = 0.009893 C = 0.008774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.792340 B = 2829.578854 C = 3190.493149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C 0.000 4.000 4 H 0.043 0.957 5 C -0.596 4.596 6 H 0.053 0.947 7 C 0.029 3.971 8 N -0.902 5.902 9 Si 1.068 2.932 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.378 3.622 14 O -0.462 6.462 15 C 0.030 3.970 16 H 0.100 0.900 17 C -0.139 4.139 18 C -0.153 4.153 19 C 0.049 3.951 20 O -0.367 6.367 21 H 0.042 0.958 22 H 0.042 0.958 23 H 0.044 0.956 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.273 0.727 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.516 7.165 3.357 10.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.020 4.020 4 H 0.061 0.939 5 C -0.633 4.633 6 H 0.071 0.929 7 C -0.176 4.176 8 N -0.537 5.537 9 Si 0.896 3.104 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.212 1.212 13 C 0.254 3.746 14 O -0.336 6.336 15 C -0.028 4.028 16 H 0.117 0.883 17 C -0.177 4.177 18 C -0.191 4.191 19 C -0.028 4.028 20 O -0.286 6.286 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.228 6.284 3.059 8.728 hybrid contribution -1.423 0.723 0.828 1.798 sum -6.652 7.007 3.887 10.414 Atomic orbital electron populations 1.21883 0.98494 1.00310 1.00236 1.21554 0.92486 0.98850 1.02312 1.19349 0.98452 0.92992 0.91170 0.93906 1.21586 0.88708 1.47839 1.05203 0.92863 1.25819 1.07121 0.93161 0.91517 1.70815 1.08178 1.45462 1.29217 0.83545 0.73836 0.76835 0.76195 1.20601 1.21253 1.21183 1.24995 0.69920 0.88437 0.91286 1.90246 1.38549 1.67415 1.37362 1.23687 0.98241 0.96869 0.83988 0.88250 1.23120 0.95940 0.96810 1.01810 1.23120 1.01614 0.97915 0.96442 1.23116 0.91798 0.90803 0.97106 1.88514 1.60242 1.51836 1.27991 0.93876 0.93919 0.93648 0.91061 0.92532 0.91583 0.89005 0.90367 0.90075 0.90292 0.91667 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.76 37.15 0.36 -2.62 16 2 C -0.11 -2.69 4.79 -26.73 -0.13 -2.82 16 3 C 0.00 -0.01 1.67 -92.92 -0.16 -0.17 16 4 H 0.04 1.04 7.52 -51.93 -0.39 0.65 16 5 C -0.60 -16.35 8.47 -34.44 -0.29 -16.64 16 6 H 0.05 1.50 7.76 -52.49 -0.41 1.10 16 7 C 0.03 0.80 5.17 -17.82 -0.09 0.71 16 8 N -0.90 -25.62 13.02 55.43 0.72 -24.90 16 9 Si 1.07 24.55 29.91 -169.99 -5.08 19.47 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 12 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 13 C 0.38 8.75 4.60 -29.03 -0.13 8.62 16 14 O -0.46 -11.80 15.75 -12.73 -0.20 -12.00 16 15 C 0.03 0.59 3.79 -26.86 -0.10 0.49 16 16 H 0.10 1.92 8.14 -51.93 -0.42 1.49 16 17 C -0.14 -2.08 6.56 -24.48 -0.16 -2.25 16 18 C -0.15 -1.84 7.02 -24.78 -0.17 -2.01 16 19 C 0.05 0.68 7.79 37.88 0.30 0.98 16 20 O -0.37 -7.21 10.66 -53.96 -0.58 -7.79 16 21 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.04 0.83 6.85 -51.93 -0.36 0.47 16 23 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.07 1.79 6.31 -51.93 -0.33 1.46 16 25 H 0.06 1.41 7.69 -51.93 -0.40 1.01 16 26 H 0.27 7.61 6.03 -40.82 -0.25 7.36 16 27 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.08 1.19 8.05 -51.93 -0.42 0.77 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 265.63 15.07 4.00 4.00 Total: -1.00 -30.93 265.63 -6.44 -37.37 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -4.72 Total: -0.45 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -0.58 Total: -15.71 kcal Atomic # 7 Polarization: -25.62 SS G_CDS: 0.72 Total: -24.90 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.78 Total: -19.78 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.08 Total: 19.47 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.93 -6.44 -37.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694888182.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.638 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds