Wall clock time and date at job start Mon Mar 30 2020 02:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47140 * 2 1 4 4 H 1.08997 * 109.47122 * 304.77184 * 3 2 1 5 5 C 1.50698 * 109.47419 * 184.76711 * 3 2 1 6 6 H 1.07997 * 120.00128 * 245.09004 * 5 3 2 7 7 C 1.37877 * 119.99497 * 65.08892 * 5 3 2 8 8 N 1.31516 * 120.00295 * 8.84599 * 7 5 3 9 9 Si 1.86808 * 119.99715 * 188.84162 * 7 5 3 10 10 H 1.48499 * 109.46921 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.47147 * 300.00413 * 9 7 5 12 12 H 1.48499 * 109.46717 * 60.00335 * 9 7 5 13 13 C 1.50703 * 109.46827 * 64.76997 * 3 2 1 14 14 O 1.20763 * 120.00085 * 27.54977 * 13 3 2 15 15 C 1.50701 * 119.99999 * 207.55493 * 13 3 2 16 16 H 1.08999 * 110.27277 * 319.35839 * 15 13 3 17 17 C 1.54944 * 110.30893 * 81.55887 * 15 13 3 18 18 C 1.55309 * 100.94032 * 155.36233 * 17 15 13 19 19 C 1.54384 * 102.25283 * 325.86330 * 18 17 15 20 20 O 1.43241 * 107.58679 * 21.36033 * 19 18 17 21 21 H 1.09004 * 109.46685 * 184.13142 * 1 2 3 22 22 H 1.08990 * 109.47459 * 304.13611 * 1 2 3 23 23 H 1.09001 * 109.47333 * 64.13935 * 1 2 3 24 24 H 1.09002 * 109.47786 * 240.00245 * 2 1 3 25 25 H 1.09003 * 109.47513 * 120.00223 * 2 1 3 26 26 H 0.96997 * 119.99846 * 357.17444 * 8 7 5 27 27 H 1.08995 * 111.12435 * 273.27690 * 17 15 13 28 28 H 1.08998 * 111.12739 * 37.44563 * 17 15 13 29 29 H 1.09000 * 110.84730 * 207.67856 * 18 17 15 30 30 H 1.08997 * 111.02260 * 84.13332 * 18 17 15 31 31 H 1.09001 * 109.82949 * 261.84660 * 19 18 17 32 32 H 1.08994 * 109.83403 * 140.87193 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6085 1.9805 -0.8441 5 6 3.5423 1.4443 -0.1181 6 1 4.1475 1.8152 0.6959 7 6 4.1441 0.9723 -1.2653 8 7 3.4136 0.6841 -2.3203 9 14 5.9971 0.7422 -1.3211 10 1 6.3920 0.2279 -2.6570 11 1 6.6654 2.0454 -1.0754 12 1 6.4069 -0.2292 -0.2753 13 6 1.6364 2.1180 1.2853 14 8 1.4716 1.4624 2.2861 15 6 1.4383 3.6115 1.3218 16 1 2.2113 4.1094 0.7365 17 6 0.0325 3.9808 0.7850 18 6 -0.2004 5.3477 1.4846 19 6 0.5127 5.1481 2.8392 20 8 1.4580 4.0841 2.6782 21 1 -0.3633 -1.0251 0.0740 22 1 -0.3634 0.5766 0.8505 23 1 -0.3634 0.4482 -0.9247 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.4479 0.7645 -2.2782 27 1 0.0426 4.0912 -0.2993 28 1 -0.7119 3.2481 1.0966 29 1 -1.2647 5.5326 1.6300 30 1 0.2590 6.1591 0.9201 31 1 -0.2160 4.8826 3.6051 32 1 1.0315 6.0639 3.1225 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694888182.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:44 Heat of formation + Delta-G solvation = -123.491623 kcal Electronic energy + Delta-G solvation = -14694.915503 eV Core-core repulsion = 12233.121733 eV Total energy + Delta-G solvation = -2461.793770 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.28317 -39.38539 -36.60236 -33.55202 -33.15302 -31.26984 -29.23622 -25.74446 -24.69763 -22.69512 -22.45268 -20.56690 -19.00921 -17.95837 -17.50209 -16.51169 -16.22630 -15.72697 -15.58974 -14.91388 -14.52692 -14.23325 -14.14242 -13.84775 -13.58197 -12.91538 -12.78082 -12.60410 -12.48755 -12.34013 -12.13115 -11.92675 -11.84942 -11.73929 -10.87436 -10.74665 -10.48345 -10.06656 -8.67806 -6.42011 1.07358 1.54352 1.60235 1.80759 2.53588 2.63404 3.11844 3.27353 3.48127 3.89414 4.04785 4.18584 4.21384 4.29133 4.32320 4.49326 4.59701 4.72932 4.73460 4.82496 4.83336 4.92170 5.05302 5.10053 5.14740 5.35041 5.42612 5.87985 5.94175 6.09091 6.51541 6.72708 7.33877 8.71694 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.032825 B = 0.009893 C = 0.008774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.792340 B = 2829.578854 C = 3190.493149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 C -0.006 4.006 4 H 0.045 0.955 5 C -0.614 4.614 6 H 0.036 0.964 7 C -0.010 4.010 8 N -0.917 5.917 9 Si 1.108 2.892 10 H -0.276 1.276 11 H -0.269 1.269 12 H -0.280 1.280 13 C 0.377 3.623 14 O -0.494 6.494 15 C 0.030 3.970 16 H 0.097 0.903 17 C -0.136 4.136 18 C -0.138 4.138 19 C 0.035 3.965 20 O -0.402 6.402 21 H 0.062 0.938 22 H 0.042 0.958 23 H 0.061 0.939 24 H 0.051 0.949 25 H 0.032 0.968 26 H 0.267 0.733 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.359 8.510 3.153 11.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.148 4.148 3 C -0.025 4.025 4 H 0.063 0.937 5 C -0.651 4.651 6 H 0.054 0.946 7 C -0.211 4.211 8 N -0.553 5.553 9 Si 0.930 3.070 10 H -0.201 1.201 11 H -0.194 1.194 12 H -0.205 1.205 13 C 0.255 3.745 14 O -0.370 6.370 15 C -0.029 4.029 16 H 0.114 0.886 17 C -0.174 4.174 18 C -0.176 4.176 19 C -0.041 4.041 20 O -0.322 6.322 21 H 0.081 0.919 22 H 0.061 0.939 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.125 0.875 28 H 0.094 0.906 29 H 0.130 0.870 30 H 0.115 0.885 31 H 0.093 0.907 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.094 7.653 2.857 10.192 hybrid contribution -1.177 0.314 0.939 1.538 sum -7.271 7.967 3.796 11.435 Atomic orbital electron populations 1.21770 0.95166 1.01853 1.01076 1.21427 0.95478 0.97831 1.00082 1.19349 0.97050 0.93806 0.92299 0.93699 1.21810 0.90410 1.48084 1.04822 0.94602 1.27030 1.10576 0.92346 0.91106 1.70902 1.08082 1.46544 1.29764 0.83041 0.69809 0.77722 0.76468 1.20121 1.19422 1.20548 1.25226 0.68628 0.90611 0.90015 1.90221 1.40113 1.68664 1.37996 1.23566 1.00988 0.93605 0.84699 0.88585 1.23175 0.92737 0.98578 1.02892 1.23133 1.03488 0.96367 0.94580 1.23475 0.91672 0.90087 0.98849 1.88471 1.62089 1.53705 1.27928 0.91912 0.93934 0.91957 0.92984 0.94881 0.92204 0.87520 0.90631 0.86981 0.88475 0.90696 0.89585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.41 9.76 71.98 0.70 -4.71 16 2 C -0.11 -5.28 4.79 30.59 0.15 -5.13 16 3 C -0.01 -0.29 1.67 -12.28 -0.02 -0.31 16 4 H 0.05 2.20 7.52 -2.39 -0.02 2.18 16 5 C -0.61 -34.32 8.47 25.60 0.22 -34.10 16 6 H 0.04 2.07 7.76 -2.91 -0.02 2.05 16 7 C -0.01 -0.52 5.17 84.65 0.44 -0.09 16 8 N -0.92 -52.36 13.02 21.45 0.28 -52.08 16 9 Si 1.11 49.28 29.91 68.60 2.05 51.33 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 12 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 13 C 0.38 17.65 4.60 29.10 0.13 17.78 16 14 O -0.49 -25.71 15.75 16.45 0.26 -25.45 16 15 C 0.03 1.13 3.79 30.51 0.12 1.24 16 16 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 17 C -0.14 -3.77 6.56 32.05 0.21 -3.56 16 18 C -0.14 -2.80 7.02 31.86 0.22 -2.58 16 19 C 0.03 0.90 7.79 72.45 0.56 1.46 16 20 O -0.40 -15.51 10.66 -131.07 -1.40 -16.90 16 21 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 22 H 0.04 1.62 6.85 -2.39 -0.02 1.60 16 23 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 24 H 0.05 2.66 6.31 -2.39 -0.02 2.64 16 25 H 0.03 1.69 7.69 -2.39 -0.02 1.67 16 26 H 0.27 15.06 6.03 -92.71 -0.56 14.50 16 27 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 28 H 0.07 2.13 8.05 -2.39 -0.02 2.11 16 29 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -67.40 265.63 5.22 -62.18 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 1.30 Total: 10.92 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: 2.73 Total: -29.99 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.28 Total: -52.08 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -1.14 Total: -42.35 kcal Atomic # 14 Polarization: 49.28 SS G_CDS: 2.05 Total: 51.33 kcal Total: -67.40 5.22 -62.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694888182.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.315 kcal (2) G-P(sol) polarization free energy of solvation -67.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds