Wall clock time and date at job start Mon Mar 30 2020 02:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47119 * 2 1 4 4 C 1.50705 * 109.47160 * 120.00138 * 2 1 3 5 5 H 1.07998 * 120.00100 * 119.99493 * 4 2 1 6 6 C 1.37877 * 119.99486 * 299.99542 * 4 2 1 7 7 N 1.31519 * 120.00535 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99657 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46790 * 90.00027 * 8 6 4 10 10 H 1.48495 * 109.47095 * 210.00259 * 8 6 4 11 11 H 1.48500 * 109.46803 * 330.00205 * 8 6 4 12 12 C 1.50701 * 109.46579 * 239.99825 * 2 1 3 13 13 O 1.20763 * 119.99937 * 269.99597 * 12 2 1 14 14 C 1.50702 * 119.99878 * 90.27962 * 12 2 1 15 15 H 1.08997 * 109.47850 * 319.69671 * 14 12 2 16 16 C 1.53088 * 109.48127 * 79.71876 * 14 12 2 17 17 C 1.53180 * 109.16315 * 177.59025 * 16 14 12 18 18 C 1.53182 * 109.03733 * 303.01926 * 17 16 14 19 19 C 1.53096 * 109.15903 * 56.98289 * 18 17 16 20 20 O 1.42904 * 109.47973 * 199.66512 * 14 12 2 21 21 H 1.08996 * 109.47096 * 59.99969 * 1 2 3 22 22 H 1.09000 * 109.47258 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46600 * 300.00009 * 1 2 3 24 24 H 0.96998 * 119.99976 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.52705 * 297.50142 * 16 14 12 26 26 H 1.09003 * 109.52420 * 57.62650 * 16 14 12 27 27 H 1.08995 * 109.54133 * 62.88700 * 17 16 14 28 28 H 1.09003 * 109.54480 * 183.15319 * 17 16 14 29 29 H 1.08998 * 109.52187 * 176.88404 * 18 17 16 30 30 H 1.08994 * 109.52298 * 297.07732 * 18 17 16 31 31 H 1.08997 * 109.48374 * 62.37152 * 19 18 17 32 32 H 1.08996 * 109.47727 * 182.40207 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9429 0.8298 2.6034 8 14 2.3214 -1.1203 4.0080 9 1 3.6297 -0.5459 4.4123 10 1 1.3432 -0.9492 5.1120 11 1 2.4858 -2.5662 3.7119 12 6 2.0323 -0.7105 -1.2305 13 8 2.2335 -1.9008 -1.2005 14 6 2.2894 0.0656 -2.4965 15 1 1.5003 0.8044 -2.6364 16 6 3.6416 0.7760 -2.3941 17 6 3.9230 1.5130 -3.7071 18 6 3.8799 0.5088 -4.8630 19 6 2.5183 -0.1912 -4.8700 20 8 2.3064 -0.8304 -3.6096 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 0.7083 1.1610 3.4844 25 1 3.6158 1.4920 -1.5727 26 1 4.4261 0.0414 -2.2124 27 1 3.1660 2.2815 -3.8633 28 1 4.9093 1.9748 -3.6619 29 1 4.0243 1.0339 -5.8072 30 1 4.6693 -0.2313 -4.7322 31 1 1.7323 0.5443 -5.0412 32 1 2.4973 -0.9373 -5.6642 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695018126.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:07 Heat of formation + Delta-G solvation = -121.591353 kcal Electronic energy + Delta-G solvation = -14551.652031 eV Core-core repulsion = 12089.940663 eV Total energy + Delta-G solvation = -2461.711368 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.08021 -39.22349 -35.85449 -34.60044 -33.03031 -31.88045 -27.33968 -27.03672 -24.86997 -23.95081 -21.28963 -20.31524 -18.49992 -17.51979 -17.25369 -16.72211 -16.28006 -15.63839 -15.30291 -15.13449 -14.81238 -14.46859 -13.75349 -13.61224 -13.47042 -13.04096 -12.73224 -12.69239 -12.38381 -12.24750 -12.13620 -12.06996 -11.90636 -11.32167 -11.09054 -10.58149 -10.47342 -10.00125 -8.18012 -6.30889 1.19612 1.38626 1.40407 1.51794 2.37218 2.62177 3.10233 3.50392 3.84432 3.91358 4.04831 4.09060 4.18483 4.51296 4.59954 4.66049 4.72839 4.84745 4.88825 4.96256 5.00536 5.05833 5.08968 5.16912 5.36790 5.45641 5.66426 5.89344 6.12340 6.27536 6.73171 6.87782 7.36953 8.87038 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.050410 B = 0.007846 C = 0.007764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.316016 B = 3567.851516 C = 3605.553888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.001 3.999 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.042 0.958 6 C 0.024 3.976 7 N -0.907 5.907 8 Si 0.954 3.046 9 H -0.269 1.269 10 H -0.274 1.274 11 H -0.281 1.281 12 C 0.368 3.632 13 O -0.490 6.490 14 C 0.046 3.954 15 H 0.101 0.899 16 C -0.140 4.140 17 C -0.114 4.114 18 C -0.153 4.153 19 C 0.046 3.954 20 O -0.398 6.398 21 H 0.048 0.952 22 H 0.019 0.981 23 H 0.077 0.923 24 H 0.267 0.733 25 H 0.083 0.917 26 H 0.053 0.947 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.401 4.948 -12.698 14.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.018 4.018 3 H 0.069 0.931 4 C -0.574 4.574 5 H 0.060 0.940 6 C -0.176 4.176 7 N -0.546 5.546 8 Si 0.779 3.221 9 H -0.195 1.195 10 H -0.199 1.199 11 H -0.206 1.206 12 C 0.245 3.755 13 O -0.365 6.365 14 C -0.012 4.012 15 H 0.118 0.882 16 C -0.178 4.178 17 C -0.151 4.151 18 C -0.191 4.191 19 C -0.029 4.029 20 O -0.318 6.318 21 H 0.067 0.933 22 H 0.038 0.962 23 H 0.095 0.905 24 H 0.076 0.924 25 H 0.102 0.898 26 H 0.072 0.928 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.122 0.878 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.400 4.237 -12.530 13.657 hybrid contribution 0.243 -0.350 1.029 1.113 sum 3.643 3.887 -11.501 12.675 Atomic orbital electron populations 1.21542 0.95161 0.99349 1.01864 1.19185 0.95205 0.96946 0.90481 0.93080 1.21210 1.32237 1.12500 0.91434 0.94016 1.25577 0.95000 0.95660 1.01370 1.69932 1.36719 1.23439 1.24506 0.85621 0.78654 0.78688 0.79132 1.19474 1.19852 1.20600 1.25503 0.70779 0.88775 0.90482 1.90216 1.40659 1.19645 1.86001 1.22669 0.99835 0.92611 0.86117 0.88192 1.22029 0.94854 0.99935 1.01024 1.21607 1.03722 0.97703 0.92102 1.22202 0.97595 0.99000 1.00254 1.22939 0.97054 0.98338 0.84611 1.88021 1.93409 1.34897 1.15481 0.93266 0.96200 0.90451 0.92378 0.89801 0.92793 0.89929 0.89473 0.87762 0.92184 0.91528 0.87537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.82 8.95 71.98 0.64 -5.17 16 2 C 0.00 0.04 2.58 -12.28 -0.03 0.01 16 3 H 0.05 2.56 8.04 -2.39 -0.02 2.54 16 4 C -0.54 -31.01 8.32 25.60 0.21 -30.80 16 5 H 0.04 2.56 7.14 -2.91 -0.02 2.54 16 6 C 0.02 1.32 5.30 84.65 0.45 1.77 16 7 N -0.91 -50.62 11.32 21.45 0.24 -50.37 16 8 Si 0.95 44.53 29.54 68.60 2.03 46.56 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 12 C 0.37 17.41 5.47 29.10 0.16 17.57 16 13 O -0.49 -27.01 16.21 16.83 0.27 -26.73 16 14 C 0.05 1.66 2.97 29.88 0.09 1.75 16 15 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 16 C -0.14 -4.31 5.40 30.68 0.17 -4.14 16 17 C -0.11 -2.41 6.03 30.72 0.19 -2.23 16 18 C -0.15 -3.03 6.14 30.69 0.19 -2.84 16 19 C 0.05 1.10 6.84 72.01 0.49 1.59 16 20 O -0.40 -14.36 10.02 -130.69 -1.31 -15.67 16 21 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 22 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.08 3.99 6.07 -2.38 -0.01 3.98 16 24 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 25 H 0.08 2.56 8.06 -2.39 -0.02 2.54 16 26 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -67.33 265.44 4.87 -62.46 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: 1.08 Total: 6.24 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: 2.55 Total: -22.49 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.24 Total: -50.37 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -1.04 Total: -42.40 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -67.33 4.87 -62.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695018126.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.127 kcal (2) G-P(sol) polarization free energy of solvation -67.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds