Wall clock time and date at job start Mon Mar 30 2020 02:45:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09003 * 109.46949 * 2 1
4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3
5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1
6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1
7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2
8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2
9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4
10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4
11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4
12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3
13 13 O 1.20764 * 119.99784 * 269.99717 * 12 2 1
14 14 C 1.50702 * 120.00079 * 90.00359 * 12 2 1
15 15 H 1.08996 * 109.48433 * 44.99406 * 14 12 2
16 16 C 1.53101 * 109.47838 * 284.97136 * 14 12 2
17 17 C 1.53171 * 109.16056 * 182.40726 * 16 14 12
18 18 C 1.53182 * 109.03620 * 56.98575 * 17 16 14
19 19 C 1.53089 * 109.16190 * 303.01414 * 18 17 16
20 20 O 1.42901 * 109.42582 * 57.60341 * 19 18 17
21 21 H 1.09000 * 109.47156 * 179.97438 * 1 2 3
22 22 H 1.08997 * 109.47359 * 300.00009 * 1 2 3
23 23 H 1.09007 * 109.47356 * 59.99532 * 1 2 3
24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4
25 25 H 1.08996 * 109.52202 * 302.31776 * 16 14 12
26 26 H 1.08999 * 109.51631 * 62.44217 * 16 14 12
27 27 H 1.09004 * 109.53971 * 176.84948 * 17 16 14
28 28 H 1.08997 * 109.54550 * 297.02595 * 17 16 14
29 29 H 1.08998 * 109.52203 * 62.92048 * 18 17 16
30 30 H 1.09004 * 109.51728 * 183.11050 * 18 17 16
31 31 H 1.08996 * 109.47860 * 177.59313 * 19 18 17
32 32 H 1.08999 * 109.48295 * 297.61666 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7105 1.2303
5 1 2.6532 -1.5886 1.1313
6 6 1.6992 -0.2395 2.4827
7 7 0.9435 0.8301 2.6034
8 14 2.3213 -1.1207 4.0078
9 1 1.8269 -0.4203 5.2204
10 1 1.8258 -2.5205 4.0075
11 1 3.8063 -1.1213 4.0080
12 6 2.0323 -0.7103 -1.2305
13 8 2.2336 -1.9007 -1.2007
14 6 2.2835 0.0649 -2.4982
15 1 2.8194 0.9842 -2.2621
16 6 0.9463 0.4089 -3.1598
17 6 1.2116 1.1436 -4.4773
18 6 2.0931 0.2653 -5.3706
19 6 3.3858 -0.0732 -4.6237
20 8 3.0669 -0.7268 -3.3936
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3634 0.5138 0.8899
23 1 -0.3634 0.5139 -0.8900
24 1 0.7089 1.1611 3.4845
25 1 0.3921 -0.5082 -3.3592
26 1 0.3653 1.0485 -2.4954
27 1 0.2654 1.3422 -4.9809
28 1 1.7208 2.0855 -4.2734
29 1 1.5619 -0.6547 -5.6147
30 1 2.3324 0.8032 -6.2879
31 1 3.9983 -0.7333 -5.2380
32 1 3.9364 0.8443 -4.4157
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000695018128.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:45:09
Heat of formation + Delta-G solvation = -101.778483 kcal
Electronic energy + Delta-G solvation = -14573.002362 eV
Core-core repulsion = 12112.150145 eV
Total energy + Delta-G solvation = -2460.852217 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 212.120 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-39.59171 -37.59841 -33.90662 -33.36642 -31.49968 -30.06979 -25.72158 -25.24610
-23.77266 -22.13183 -20.08372 -18.67015 -16.51469 -16.00238 -15.68490 -15.10531
-14.61338 -14.42539 -13.89848 -13.64328 -13.22183 -12.70189 -12.45916 -12.18488
-11.56668 -11.26667 -11.04620 -11.00485 -10.96615 -10.71304 -10.67361 -10.26205
-10.14728 -10.06388 -9.25611 -9.02010 -8.46544 -8.16681 -6.05820 -4.11170
3.02044 3.34323 3.36871 3.42732 3.92811 4.43136 4.82234 4.90494
4.95095 5.16345 5.24197 5.29752 5.38020 5.56864 5.71169 5.80995
5.90397 6.00580 6.06151 6.18770 6.38694 6.46257 6.69889 6.87725
6.97892 7.37722 7.52912 7.74692 7.98848 8.23658 8.69949 8.93404
9.53747 11.00820
Molecular weight = 212.12amu
Principal moments of inertia in cm(-1)
A = 0.056621 B = 0.007905 C = 0.007331
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 494.398827 B = 3541.321606 C = 3818.346626
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C 0.009 3.991
3 H 0.049 0.951
4 C -0.508 4.508
5 H 0.066 0.934
6 C 0.062 3.938
7 N -0.893 5.893
8 Si 0.900 3.100
9 H -0.287 1.287
10 H -0.275 1.275
11 H -0.276 1.276
12 C 0.368 3.632
13 O -0.446 6.446
14 C 0.036 3.964
15 H 0.080 0.920
16 C -0.143 4.143
17 C -0.120 4.120
18 C -0.157 4.157
19 C 0.057 3.943
20 O -0.364 6.364
21 H 0.032 0.968
22 H 0.094 0.906
23 H 0.017 0.983
24 H 0.262 0.738
25 H 0.071 0.929
26 H 0.088 0.912
27 H 0.067 0.933
28 H 0.065 0.935
29 H 0.070 0.930
30 H 0.069 0.931
31 H 0.090 0.910
32 H 0.048 0.952
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.342 3.244 -12.246 12.673
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.010 4.010
3 H 0.067 0.933
4 C -0.546 4.546
5 H 0.084 0.916
6 C -0.139 4.139
7 N -0.532 5.532
8 Si 0.727 3.273
9 H -0.212 1.212
10 H -0.201 1.201
11 H -0.201 1.201
12 C 0.242 3.758
13 O -0.318 6.318
14 C -0.023 4.023
15 H 0.097 0.903
16 C -0.181 4.181
17 C -0.158 4.158
18 C -0.194 4.194
19 C -0.020 4.020
20 O -0.283 6.283
21 H 0.052 0.948
22 H 0.113 0.887
23 H 0.036 0.964
24 H 0.072 0.928
25 H 0.090 0.910
26 H 0.106 0.894
27 H 0.086 0.914
28 H 0.083 0.917
29 H 0.089 0.911
30 H 0.088 0.912
31 H 0.108 0.892
32 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges 0.430 2.522 -12.039 12.308
hybrid contribution 0.222 0.029 0.640 0.679
sum 0.652 2.551 -11.398 11.699
Atomic orbital electron populations
1.21754 0.95898 1.00064 1.01181 1.19151 0.94576 0.97147 0.90100
0.93270 1.21029 1.31607 1.12606 0.89377 0.91589 1.24931 0.94953
0.94980 0.99064 1.69856 1.36722 1.22886 1.23746 0.86521 0.79279
0.79844 0.81634 1.21225 1.20084 1.20148 1.25236 0.72673 0.89336
0.88593 1.90243 1.38821 1.17803 1.84884 1.22937 0.92405 0.95821
0.91092 0.90276 1.22104 0.97164 1.01742 0.97059 1.21587 1.00019
0.98426 0.95732 1.22202 0.97734 1.00727 0.98767 1.22568 0.95628
0.97679 0.86132 1.88086 1.71554 1.41347 1.27267 0.94844 0.88726
0.96407 0.92782 0.90987 0.89369 0.91412 0.91670 0.91138 0.91220
0.89163 0.93411
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.07 8.88 37.16 0.33 -2.74 16
2 C 0.01 0.23 2.56 -92.93 -0.24 -0.01 16
3 H 0.05 1.24 8.12 -51.93 -0.42 0.81 16
4 C -0.51 -14.44 8.32 -34.44 -0.29 -14.73 16
5 H 0.07 1.96 7.14 -52.49 -0.37 1.58 16
6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16
7 N -0.89 -25.00 11.32 55.43 0.63 -24.37 16
8 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16
9 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16
10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
12 C 0.37 8.58 5.53 -29.03 -0.16 8.42 16
13 O -0.45 -11.87 16.16 -13.50 -0.22 -12.09 16
14 C 0.04 0.67 2.98 -27.83 -0.08 0.59 16
15 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16
16 C -0.14 -2.20 5.05 -26.59 -0.13 -2.33 16
17 C -0.12 -1.44 6.03 -26.55 -0.16 -1.60 16
18 C -0.16 -1.80 6.14 -26.59 -0.16 -1.96 16
19 C 0.06 0.76 6.84 37.20 0.25 1.02 16
20 O -0.36 -6.82 9.98 -54.73 -0.55 -7.36 16
21 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16
22 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16
23 H 0.02 0.34 5.88 -51.93 -0.31 0.03 16
24 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16
25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16
26 H 0.09 1.32 6.23 -51.93 -0.32 1.00 16
27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16
32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16
LS Contribution 260.99 15.07 3.93 3.93
Total: -1.00 -30.88 260.99 -6.64 -37.52
By element:
Atomic # 1 Polarization: 2.06 SS G_CDS: -4.68 Total: -2.62 kcal
Atomic # 6 Polarization: -10.98 SS G_CDS: -0.74 Total: -11.72 kcal
Atomic # 7 Polarization: -25.00 SS G_CDS: 0.63 Total: -24.37 kcal
Atomic # 8 Polarization: -18.69 SS G_CDS: -0.76 Total: -19.46 kcal
Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal
Total LS contribution 3.93 Total: 3.93 kcal
Total: -30.88 -6.64 -37.52 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695018128.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -64.258 kcal
(2) G-P(sol) polarization free energy of solvation -30.880 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.138 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.521 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.778 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds