Wall clock time and date at job start Mon Mar 30 2020 02:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.20764 * 119.99784 * 269.99717 * 12 2 1 14 14 C 1.50702 * 120.00079 * 90.00359 * 12 2 1 15 15 H 1.08996 * 109.48433 * 44.99406 * 14 12 2 16 16 C 1.53101 * 109.47838 * 284.97136 * 14 12 2 17 17 C 1.53171 * 109.16056 * 182.40726 * 16 14 12 18 18 C 1.53182 * 109.03620 * 56.98575 * 17 16 14 19 19 C 1.53089 * 109.16190 * 303.01414 * 18 17 16 20 20 O 1.42901 * 109.42582 * 57.60341 * 19 18 17 21 21 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 23 23 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.08996 * 109.52202 * 302.31776 * 16 14 12 26 26 H 1.08999 * 109.51631 * 62.44217 * 16 14 12 27 27 H 1.09004 * 109.53971 * 176.84948 * 17 16 14 28 28 H 1.08997 * 109.54550 * 297.02595 * 17 16 14 29 29 H 1.08998 * 109.52203 * 62.92048 * 18 17 16 30 30 H 1.09004 * 109.51728 * 183.11050 * 18 17 16 31 31 H 1.08996 * 109.47860 * 177.59313 * 19 18 17 32 32 H 1.08999 * 109.48295 * 297.61666 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 6 2.0323 -0.7103 -1.2305 13 8 2.2336 -1.9007 -1.2007 14 6 2.2835 0.0649 -2.4982 15 1 2.8194 0.9842 -2.2621 16 6 0.9463 0.4089 -3.1598 17 6 1.2116 1.1436 -4.4773 18 6 2.0931 0.2653 -5.3706 19 6 3.3858 -0.0732 -4.6237 20 8 3.0669 -0.7268 -3.3936 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 0.7089 1.1611 3.4845 25 1 0.3921 -0.5082 -3.3592 26 1 0.3653 1.0485 -2.4954 27 1 0.2654 1.3422 -4.9809 28 1 1.7208 2.0855 -4.2734 29 1 1.5619 -0.6547 -5.6147 30 1 2.3324 0.8032 -6.2879 31 1 3.9983 -0.7333 -5.2380 32 1 3.9364 0.8443 -4.4157 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695018128.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:09 Heat of formation + Delta-G solvation = -120.440579 kcal Electronic energy + Delta-G solvation = -14573.811612 eV Core-core repulsion = 12112.150145 eV Total energy + Delta-G solvation = -2461.661467 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.09635 -39.21433 -35.88428 -34.60090 -33.10594 -31.74182 -27.31938 -27.12303 -24.96188 -23.81803 -21.18051 -20.45888 -18.49345 -17.47736 -17.29855 -16.70707 -16.21169 -15.79222 -15.27783 -15.07205 -14.94578 -14.38513 -13.74676 -13.64641 -13.41269 -13.04165 -12.74090 -12.62415 -12.39252 -12.26915 -12.15785 -12.02819 -11.86276 -11.30687 -11.06585 -10.59676 -10.45526 -9.99692 -8.18341 -6.31484 1.20026 1.39471 1.41110 1.49786 2.37612 2.61049 3.10073 3.49507 3.84395 3.92160 4.05484 4.09456 4.19506 4.48653 4.62143 4.64572 4.75413 4.81163 4.88744 4.98520 5.01574 5.07048 5.13716 5.20042 5.37875 5.45468 5.66352 5.91272 6.12994 6.28189 6.72298 6.87786 7.36276 8.86362 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.056621 B = 0.007905 C = 0.007331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.398827 B = 3541.321606 C = 3818.346626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.002 3.998 3 H 0.047 0.953 4 C -0.541 4.541 5 H 0.041 0.959 6 C 0.024 3.976 7 N -0.906 5.906 8 Si 0.954 3.046 9 H -0.271 1.271 10 H -0.278 1.278 11 H -0.273 1.273 12 C 0.367 3.633 13 O -0.490 6.490 14 C 0.044 3.956 15 H 0.095 0.905 16 C -0.140 4.140 17 C -0.116 4.116 18 C -0.152 4.152 19 C 0.046 3.954 20 O -0.399 6.399 21 H 0.018 0.982 22 H 0.074 0.926 23 H 0.056 0.944 24 H 0.267 0.733 25 H 0.059 0.941 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.270 4.513 -13.531 14.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.017 4.017 3 H 0.065 0.935 4 C -0.578 4.578 5 H 0.059 0.941 6 C -0.176 4.176 7 N -0.545 5.545 8 Si 0.779 3.221 9 H -0.196 1.196 10 H -0.204 1.204 11 H -0.198 1.198 12 C 0.244 3.756 13 O -0.365 6.365 14 C -0.014 4.014 15 H 0.113 0.887 16 C -0.178 4.178 17 C -0.153 4.153 18 C -0.190 4.190 19 C -0.030 4.030 20 O -0.319 6.319 21 H 0.037 0.963 22 H 0.093 0.907 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.353 3.819 -13.338 13.878 hybrid contribution 0.274 -0.358 1.008 1.104 sum 0.626 3.462 -12.330 12.822 Atomic orbital electron populations 1.21589 0.94788 0.99323 1.02077 1.19158 0.95586 0.96669 0.90316 0.93498 1.21217 1.32431 1.12618 0.91573 0.94072 1.25580 0.94987 0.95654 1.01363 1.69926 1.36678 1.23300 1.24590 0.85672 0.78852 0.78678 0.78856 1.19587 1.20386 1.19841 1.25510 0.71090 0.88834 0.90164 1.90216 1.40818 1.19622 1.85839 1.22699 0.94625 0.94793 0.89302 0.88730 1.22112 0.94955 1.01736 0.98991 1.21618 1.01527 0.98435 0.93706 1.22194 0.96364 1.00762 0.99660 1.22933 0.97219 0.98504 0.84365 1.88026 1.71794 1.42812 1.29268 0.96287 0.90716 0.92532 0.92342 0.92241 0.89061 0.89164 0.90199 0.91949 0.87884 0.87659 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.88 71.98 0.64 -4.99 16 2 C 0.00 0.09 2.56 -12.29 -0.03 0.06 16 3 H 0.05 2.38 8.12 -2.39 -0.02 2.36 16 4 C -0.54 -31.55 8.32 25.60 0.21 -31.33 16 5 H 0.04 2.55 7.14 -2.91 -0.02 2.52 16 6 C 0.02 1.35 5.30 84.66 0.45 1.80 16 7 N -0.91 -50.70 11.32 21.45 0.24 -50.46 16 8 Si 0.95 44.76 29.54 68.60 2.03 46.78 16 9 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 12 C 0.37 17.41 5.53 29.10 0.16 17.57 16 13 O -0.49 -27.03 16.16 17.18 0.28 -26.75 16 14 C 0.04 1.60 2.98 29.88 0.09 1.69 16 15 H 0.10 3.09 8.14 -2.39 -0.02 3.08 16 16 C -0.14 -4.03 5.05 30.69 0.15 -3.87 16 17 C -0.12 -2.33 6.03 30.71 0.19 -2.14 16 18 C -0.15 -2.95 6.14 30.68 0.19 -2.76 16 19 C 0.05 1.10 6.84 72.01 0.49 1.59 16 20 O -0.40 -14.62 9.98 -130.34 -1.30 -15.92 16 21 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 23 H 0.06 2.15 5.88 -2.38 -0.01 2.13 16 24 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 25 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.09 2.52 6.23 -2.39 -0.01 2.50 16 27 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -67.80 260.99 4.88 -62.93 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: 1.09 Total: 5.82 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: 2.54 Total: -22.40 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.24 Total: -50.46 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -1.02 Total: -42.67 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -67.80 4.88 -62.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695018128.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.515 kcal (2) G-P(sol) polarization free energy of solvation -67.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds