Wall clock time and date at job start Mon Mar 30 2020 02:45:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09003 * 109.46949 * 2 1
4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3
5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1
6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1
7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2
8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2
9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4
10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4
11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4
12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3
13 13 O 1.20764 * 119.99784 * 269.99717 * 12 2 1
14 14 C 1.50702 * 120.00079 * 90.00359 * 12 2 1
15 15 H 1.08996 * 109.48433 * 44.99406 * 14 12 2
16 16 C 1.53101 * 109.47838 * 284.97136 * 14 12 2
17 17 C 1.53171 * 109.16056 * 182.40726 * 16 14 12
18 18 C 1.53182 * 109.03620 * 56.98575 * 17 16 14
19 19 C 1.53089 * 109.16190 * 303.01414 * 18 17 16
20 20 O 1.42901 * 109.42582 * 57.60341 * 19 18 17
21 21 H 1.09000 * 109.47156 * 179.97438 * 1 2 3
22 22 H 1.08997 * 109.47359 * 300.00009 * 1 2 3
23 23 H 1.09007 * 109.47356 * 59.99532 * 1 2 3
24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4
25 25 H 1.08996 * 109.52202 * 302.31776 * 16 14 12
26 26 H 1.08999 * 109.51631 * 62.44217 * 16 14 12
27 27 H 1.09004 * 109.53971 * 176.84948 * 17 16 14
28 28 H 1.08997 * 109.54550 * 297.02595 * 17 16 14
29 29 H 1.08998 * 109.52203 * 62.92048 * 18 17 16
30 30 H 1.09004 * 109.51728 * 183.11050 * 18 17 16
31 31 H 1.08996 * 109.47860 * 177.59313 * 19 18 17
32 32 H 1.08999 * 109.48295 * 297.61666 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7105 1.2303
5 1 2.6532 -1.5886 1.1313
6 6 1.6992 -0.2395 2.4827
7 7 0.9435 0.8301 2.6034
8 14 2.3213 -1.1207 4.0078
9 1 1.8269 -0.4203 5.2204
10 1 1.8258 -2.5205 4.0075
11 1 3.8063 -1.1213 4.0080
12 6 2.0323 -0.7103 -1.2305
13 8 2.2336 -1.9007 -1.2007
14 6 2.2835 0.0649 -2.4982
15 1 2.8194 0.9842 -2.2621
16 6 0.9463 0.4089 -3.1598
17 6 1.2116 1.1436 -4.4773
18 6 2.0931 0.2653 -5.3706
19 6 3.3858 -0.0732 -4.6237
20 8 3.0669 -0.7268 -3.3936
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3634 0.5138 0.8899
23 1 -0.3634 0.5139 -0.8900
24 1 0.7089 1.1611 3.4845
25 1 0.3921 -0.5082 -3.3592
26 1 0.3653 1.0485 -2.4954
27 1 0.2654 1.3422 -4.9809
28 1 1.7208 2.0855 -4.2734
29 1 1.5619 -0.6547 -5.6147
30 1 2.3324 0.8032 -6.2879
31 1 3.9983 -0.7333 -5.2380
32 1 3.9364 0.8443 -4.4157
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000695018128.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:45:09
Heat of formation + Delta-G solvation = -120.440579 kcal
Electronic energy + Delta-G solvation = -14573.811612 eV
Core-core repulsion = 12112.150145 eV
Total energy + Delta-G solvation = -2461.661467 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 212.120 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-41.09635 -39.21433 -35.88428 -34.60090 -33.10594 -31.74182 -27.31938 -27.12303
-24.96188 -23.81803 -21.18051 -20.45888 -18.49345 -17.47736 -17.29855 -16.70707
-16.21169 -15.79222 -15.27783 -15.07205 -14.94578 -14.38513 -13.74676 -13.64641
-13.41269 -13.04165 -12.74090 -12.62415 -12.39252 -12.26915 -12.15785 -12.02819
-11.86276 -11.30687 -11.06585 -10.59676 -10.45526 -9.99692 -8.18341 -6.31484
1.20026 1.39471 1.41110 1.49786 2.37612 2.61049 3.10073 3.49507
3.84395 3.92160 4.05484 4.09456 4.19506 4.48653 4.62143 4.64572
4.75413 4.81163 4.88744 4.98520 5.01574 5.07048 5.13716 5.20042
5.37875 5.45468 5.66352 5.91272 6.12994 6.28189 6.72298 6.87786
7.36276 8.86362
Molecular weight = 212.12amu
Principal moments of inertia in cm(-1)
A = 0.056621 B = 0.007905 C = 0.007331
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 494.398827 B = 3541.321606 C = 3818.346626
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C 0.002 3.998
3 H 0.047 0.953
4 C -0.541 4.541
5 H 0.041 0.959
6 C 0.024 3.976
7 N -0.906 5.906
8 Si 0.954 3.046
9 H -0.271 1.271
10 H -0.278 1.278
11 H -0.273 1.273
12 C 0.367 3.633
13 O -0.490 6.490
14 C 0.044 3.956
15 H 0.095 0.905
16 C -0.140 4.140
17 C -0.116 4.116
18 C -0.152 4.152
19 C 0.046 3.954
20 O -0.399 6.399
21 H 0.018 0.982
22 H 0.074 0.926
23 H 0.056 0.944
24 H 0.267 0.733
25 H 0.059 0.941
26 H 0.091 0.909
27 H 0.090 0.910
28 H 0.079 0.921
29 H 0.062 0.938
30 H 0.103 0.897
31 H 0.105 0.895
32 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.270 4.513 -13.531 14.266
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C -0.017 4.017
3 H 0.065 0.935
4 C -0.578 4.578
5 H 0.059 0.941
6 C -0.176 4.176
7 N -0.545 5.545
8 Si 0.779 3.221
9 H -0.196 1.196
10 H -0.204 1.204
11 H -0.198 1.198
12 C 0.244 3.756
13 O -0.365 6.365
14 C -0.014 4.014
15 H 0.113 0.887
16 C -0.178 4.178
17 C -0.153 4.153
18 C -0.190 4.190
19 C -0.030 4.030
20 O -0.319 6.319
21 H 0.037 0.963
22 H 0.093 0.907
23 H 0.075 0.925
24 H 0.077 0.923
25 H 0.078 0.922
26 H 0.109 0.891
27 H 0.108 0.892
28 H 0.098 0.902
29 H 0.081 0.919
30 H 0.121 0.879
31 H 0.123 0.877
32 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 0.353 3.819 -13.338 13.878
hybrid contribution 0.274 -0.358 1.008 1.104
sum 0.626 3.462 -12.330 12.822
Atomic orbital electron populations
1.21589 0.94788 0.99323 1.02077 1.19158 0.95586 0.96669 0.90316
0.93498 1.21217 1.32431 1.12618 0.91573 0.94072 1.25580 0.94987
0.95654 1.01363 1.69926 1.36678 1.23300 1.24590 0.85672 0.78852
0.78678 0.78856 1.19587 1.20386 1.19841 1.25510 0.71090 0.88834
0.90164 1.90216 1.40818 1.19622 1.85839 1.22699 0.94625 0.94793
0.89302 0.88730 1.22112 0.94955 1.01736 0.98991 1.21618 1.01527
0.98435 0.93706 1.22194 0.96364 1.00762 0.99660 1.22933 0.97219
0.98504 0.84365 1.88026 1.71794 1.42812 1.29268 0.96287 0.90716
0.92532 0.92342 0.92241 0.89061 0.89164 0.90199 0.91949 0.87884
0.87659 0.91876
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.63 8.88 71.98 0.64 -4.99 16
2 C 0.00 0.09 2.56 -12.29 -0.03 0.06 16
3 H 0.05 2.38 8.12 -2.39 -0.02 2.36 16
4 C -0.54 -31.55 8.32 25.60 0.21 -31.33 16
5 H 0.04 2.55 7.14 -2.91 -0.02 2.52 16
6 C 0.02 1.35 5.30 84.66 0.45 1.80 16
7 N -0.91 -50.70 11.32 21.45 0.24 -50.46 16
8 Si 0.95 44.76 29.54 68.60 2.03 46.78 16
9 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16
10 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16
11 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16
12 C 0.37 17.41 5.53 29.10 0.16 17.57 16
13 O -0.49 -27.03 16.16 17.18 0.28 -26.75 16
14 C 0.04 1.60 2.98 29.88 0.09 1.69 16
15 H 0.10 3.09 8.14 -2.39 -0.02 3.08 16
16 C -0.14 -4.03 5.05 30.69 0.15 -3.87 16
17 C -0.12 -2.33 6.03 30.71 0.19 -2.14 16
18 C -0.15 -2.95 6.14 30.68 0.19 -2.76 16
19 C 0.05 1.10 6.84 72.01 0.49 1.59 16
20 O -0.40 -14.62 9.98 -130.34 -1.30 -15.92 16
21 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16
22 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16
23 H 0.06 2.15 5.88 -2.38 -0.01 2.13 16
24 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16
25 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16
26 H 0.09 2.52 6.23 -2.39 -0.01 2.50 16
27 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16
28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16
29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16
30 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16
31 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16
32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16
Total: -1.00 -67.80 260.99 4.88 -62.93
By element:
Atomic # 1 Polarization: 4.73 SS G_CDS: 1.09 Total: 5.82 kcal
Atomic # 6 Polarization: -24.94 SS G_CDS: 2.54 Total: -22.40 kcal
Atomic # 7 Polarization: -50.70 SS G_CDS: 0.24 Total: -50.46 kcal
Atomic # 8 Polarization: -41.65 SS G_CDS: -1.02 Total: -42.67 kcal
Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal
Total: -67.80 4.88 -62.93 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695018128.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -57.515 kcal
(2) G-P(sol) polarization free energy of solvation -67.804 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.319 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.878 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.925 kcal
(6) G-S(sol) free energy of system = (1) + (5) -120.441 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds