Wall clock time and date at job start Mon Mar 30 2020 02:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47500 * 2 1 4 4 C 1.50692 * 109.47342 * 239.99638 * 2 1 3 5 5 H 1.08010 * 120.00048 * 240.00306 * 4 2 1 6 6 C 1.37877 * 120.00138 * 60.00071 * 4 2 1 7 7 N 1.31512 * 120.00134 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99974 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.46991 * 60.00217 * 8 6 4 10 10 H 1.48504 * 109.47002 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46939 * 300.00237 * 8 6 4 12 12 C 1.50703 * 109.46603 * 119.99395 * 2 1 3 13 13 O 1.20764 * 119.99519 * 95.00254 * 12 2 1 14 14 C 1.50697 * 120.00204 * 274.99918 * 12 2 1 15 15 H 1.08992 * 109.48113 * 319.97936 * 14 12 2 16 16 C 1.53096 * 109.48058 * 80.00406 * 14 12 2 17 17 C 1.53178 * 109.16278 * 177.60246 * 16 14 12 18 18 C 1.53178 * 109.03511 * 303.01594 * 17 16 14 19 19 C 1.53093 * 109.16255 * 56.98447 * 18 17 16 20 20 O 1.42904 * 109.42351 * 302.38111 * 19 18 17 21 21 H 1.09004 * 109.46823 * 59.99921 * 1 2 3 22 22 H 1.08994 * 109.47500 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47613 * 300.00539 * 1 2 3 24 24 H 0.96996 * 120.00389 * 180.02562 * 7 6 4 25 25 H 1.08999 * 109.52155 * 57.69455 * 16 14 12 26 26 H 1.09004 * 109.51758 * 297.51000 * 16 14 12 27 27 H 1.09002 * 109.54068 * 183.15004 * 17 16 14 28 28 H 1.08996 * 109.54450 * 62.88578 * 17 16 14 29 29 H 1.09000 * 109.52619 * 297.07706 * 18 17 16 30 30 H 1.08998 * 109.51869 * 176.88944 * 18 17 16 31 31 H 1.09002 * 109.48198 * 62.37219 * 19 18 17 32 32 H 1.08999 * 109.48029 * 182.39833 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6035 8 14 2.3215 -1.1206 -4.0078 9 1 1.8259 -2.5204 -4.0075 10 1 1.8271 -0.4202 -5.2204 11 1 3.8065 -1.1212 -4.0079 12 6 2.0322 -0.7103 1.2306 13 8 2.3194 -1.8821 1.1764 14 6 2.1761 0.0416 2.5287 15 1 2.5720 1.0374 2.3299 16 6 0.8072 0.1616 3.2036 17 6 0.9710 0.8739 4.5498 18 6 1.9755 0.0974 5.4068 19 6 3.2993 -0.0202 4.6468 20 8 3.0711 -0.6638 3.3915 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 0.7090 1.1612 -3.4845 25 1 0.3926 -0.8333 3.3659 26 1 0.1361 0.7373 2.5661 27 1 0.0091 0.9130 5.0610 28 1 1.3389 1.8864 4.3842 29 1 1.5846 -0.8988 5.6136 30 1 2.1400 0.6272 6.3450 31 1 3.7100 0.9749 4.4758 32 1 4.0045 -0.6085 5.2339 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695018131.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:10 Heat of formation + Delta-G solvation = -101.068827 kcal Electronic energy + Delta-G solvation = -14572.091983 eV Core-core repulsion = 12111.270539 eV Total energy + Delta-G solvation = -2460.821444 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.59677 -37.59903 -33.89974 -33.37742 -31.50448 -30.07157 -25.71134 -25.24130 -23.79599 -22.13307 -20.07631 -18.68140 -16.51233 -15.99557 -15.67332 -15.12514 -14.60356 -14.43295 -13.90675 -13.64132 -13.24620 -12.68487 -12.45317 -12.21352 -11.58540 -11.27934 -11.03076 -11.01842 -10.95974 -10.71628 -10.65930 -10.26705 -10.12784 -10.05143 -9.26110 -9.00635 -8.46197 -8.16637 -6.05131 -4.10366 3.00464 3.34836 3.37286 3.43130 3.94042 4.43731 4.81828 4.90405 4.94821 5.16080 5.24778 5.29896 5.37734 5.56675 5.70682 5.80512 5.89649 5.99931 6.05758 6.16953 6.38127 6.46371 6.70005 6.87872 6.97017 7.37153 7.52999 7.75365 7.99335 8.23929 8.70052 8.94886 9.54729 11.01588 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.057597 B = 0.007871 C = 0.007305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.023958 B = 3556.421792 C = 3832.211257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.008 3.992 3 H 0.051 0.949 4 C -0.508 4.508 5 H 0.067 0.933 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.368 3.632 13 O -0.445 6.445 14 C 0.037 3.963 15 H 0.079 0.921 16 C -0.144 4.144 17 C -0.120 4.120 18 C -0.157 4.157 19 C 0.057 3.943 20 O -0.364 6.364 21 H 0.094 0.906 22 H 0.032 0.968 23 H 0.018 0.982 24 H 0.262 0.738 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.245 2.888 12.435 12.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.011 4.011 3 H 0.069 0.931 4 C -0.546 4.546 5 H 0.085 0.915 6 C -0.139 4.139 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.241 3.759 13 O -0.316 6.316 14 C -0.022 4.022 15 H 0.097 0.903 16 C -0.182 4.182 17 C -0.157 4.157 18 C -0.194 4.194 19 C -0.020 4.020 20 O -0.283 6.283 21 H 0.113 0.887 22 H 0.051 0.949 23 H 0.037 0.963 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.107 0.893 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.083 2.187 12.206 12.401 hybrid contribution 0.165 0.007 -0.625 0.646 sum 0.083 2.194 11.582 11.788 Atomic orbital electron populations 1.21766 0.95926 1.00029 1.01210 1.19160 0.94570 0.97196 0.90139 0.93137 1.21055 1.31542 1.12672 0.89374 0.91453 1.24930 0.94967 0.94983 0.99065 1.69852 1.36791 1.22914 1.23733 0.86524 0.79294 0.79829 0.81646 1.20100 1.21244 1.20148 1.25228 0.72859 0.88800 0.88978 1.90240 1.37030 1.18354 1.86024 1.22937 0.90576 0.97188 0.91514 0.90345 1.22138 0.97059 1.02231 0.96782 1.21587 0.99436 0.99037 0.95687 1.22202 0.96964 1.01430 0.98840 1.22570 0.96158 0.97766 0.85506 1.88089 1.64865 1.48700 1.26621 0.88715 0.94870 0.96336 0.92797 0.90971 0.89336 0.91410 0.91668 0.91138 0.91219 0.93394 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.85 37.16 0.33 -2.73 16 2 C 0.01 0.21 2.56 -92.93 -0.24 -0.03 16 3 H 0.05 1.28 8.14 -51.93 -0.42 0.85 16 4 C -0.51 -14.48 8.33 -34.44 -0.29 -14.76 16 5 H 0.07 2.00 7.03 -52.48 -0.37 1.64 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.05 11.32 55.43 0.63 -24.42 16 8 Si 0.90 21.78 29.54 -169.99 -5.02 16.75 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.37 8.57 5.56 -29.04 -0.16 8.41 16 13 O -0.45 -11.84 16.07 -13.12 -0.21 -12.05 16 14 C 0.04 0.68 2.99 -27.83 -0.08 0.59 16 15 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 16 C -0.14 -2.22 5.20 -26.59 -0.14 -2.36 16 17 C -0.12 -1.43 6.03 -26.55 -0.16 -1.59 16 18 C -0.16 -1.80 6.14 -26.59 -0.16 -1.96 16 19 C 0.06 0.76 6.84 37.21 0.25 1.01 16 20 O -0.36 -6.81 10.02 -54.35 -0.54 -7.36 16 21 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.02 0.35 5.71 -51.93 -0.30 0.05 16 24 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.09 1.32 5.85 -51.93 -0.30 1.02 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 260.46 15.07 3.93 3.93 Total: -1.00 -30.90 260.46 -6.61 -37.52 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -4.65 Total: -2.57 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -0.74 Total: -11.80 kcal Atomic # 7 Polarization: -25.05 SS G_CDS: 0.63 Total: -24.42 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.76 Total: -19.41 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.90 -6.61 -37.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695018131.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.553 kcal (2) G-P(sol) polarization free energy of solvation -30.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds