Wall clock time and date at job start Mon Mar 30 2020 02:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47500 * 2 1 4 4 C 1.50692 * 109.47342 * 239.99638 * 2 1 3 5 5 H 1.08010 * 120.00048 * 240.00306 * 4 2 1 6 6 C 1.37877 * 120.00138 * 60.00071 * 4 2 1 7 7 N 1.31512 * 120.00134 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99974 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.46991 * 60.00217 * 8 6 4 10 10 H 1.48504 * 109.47002 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46939 * 300.00237 * 8 6 4 12 12 C 1.50703 * 109.46603 * 119.99395 * 2 1 3 13 13 O 1.20764 * 119.99519 * 95.00254 * 12 2 1 14 14 C 1.50697 * 120.00204 * 274.99918 * 12 2 1 15 15 H 1.08992 * 109.48113 * 319.97936 * 14 12 2 16 16 C 1.53096 * 109.48058 * 80.00406 * 14 12 2 17 17 C 1.53178 * 109.16278 * 177.60246 * 16 14 12 18 18 C 1.53178 * 109.03511 * 303.01594 * 17 16 14 19 19 C 1.53093 * 109.16255 * 56.98447 * 18 17 16 20 20 O 1.42904 * 109.42351 * 302.38111 * 19 18 17 21 21 H 1.09004 * 109.46823 * 59.99921 * 1 2 3 22 22 H 1.08994 * 109.47500 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47613 * 300.00539 * 1 2 3 24 24 H 0.96996 * 120.00389 * 180.02562 * 7 6 4 25 25 H 1.08999 * 109.52155 * 57.69455 * 16 14 12 26 26 H 1.09004 * 109.51758 * 297.51000 * 16 14 12 27 27 H 1.09002 * 109.54068 * 183.15004 * 17 16 14 28 28 H 1.08996 * 109.54450 * 62.88578 * 17 16 14 29 29 H 1.09000 * 109.52619 * 297.07706 * 18 17 16 30 30 H 1.08998 * 109.51869 * 176.88944 * 18 17 16 31 31 H 1.09002 * 109.48198 * 62.37219 * 19 18 17 32 32 H 1.08999 * 109.48029 * 182.39833 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6035 8 14 2.3215 -1.1206 -4.0078 9 1 1.8259 -2.5204 -4.0075 10 1 1.8271 -0.4202 -5.2204 11 1 3.8065 -1.1212 -4.0079 12 6 2.0322 -0.7103 1.2306 13 8 2.3194 -1.8821 1.1764 14 6 2.1761 0.0416 2.5287 15 1 2.5720 1.0374 2.3299 16 6 0.8072 0.1616 3.2036 17 6 0.9710 0.8739 4.5498 18 6 1.9755 0.0974 5.4068 19 6 3.2993 -0.0202 4.6468 20 8 3.0711 -0.6638 3.3915 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 0.7090 1.1612 -3.4845 25 1 0.3926 -0.8333 3.3659 26 1 0.1361 0.7373 2.5661 27 1 0.0091 0.9130 5.0610 28 1 1.3389 1.8864 4.3842 29 1 1.5846 -0.8988 5.6136 30 1 2.1400 0.6272 6.3450 31 1 3.7100 0.9749 4.4758 32 1 4.0045 -0.6085 5.2339 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695018131.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:10 Heat of formation + Delta-G solvation = -119.815980 kcal Electronic energy + Delta-G solvation = -14572.904921 eV Core-core repulsion = 12111.270539 eV Total energy + Delta-G solvation = -2461.634382 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.10024 -39.21273 -35.88104 -34.60547 -33.11668 -31.73638 -27.30913 -27.11403 -24.99196 -23.80702 -21.17486 -20.46640 -18.48434 -17.47319 -17.29138 -16.72206 -16.20347 -15.80409 -15.28859 -15.08401 -14.95837 -14.35480 -13.75131 -13.66996 -13.41784 -13.03877 -12.74202 -12.62712 -12.37255 -12.26213 -12.15529 -12.02102 -11.86736 -11.31195 -11.04009 -10.59855 -10.45588 -9.99480 -8.17990 -6.31009 1.19205 1.39386 1.40908 1.49623 2.37761 2.62001 3.10395 3.49473 3.84116 3.91981 4.05501 4.09466 4.19412 4.47121 4.62829 4.63751 4.75124 4.80287 4.88621 4.97946 5.01357 5.06960 5.14124 5.22125 5.37707 5.46007 5.67250 5.91980 6.13601 6.28331 6.73093 6.87930 7.36894 8.86720 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.057597 B = 0.007871 C = 0.007305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.023958 B = 3556.421792 C = 3832.211257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.000 4.000 3 H 0.047 0.953 4 C -0.541 4.541 5 H 0.042 0.958 6 C 0.024 3.976 7 N -0.907 5.907 8 Si 0.954 3.046 9 H -0.278 1.278 10 H -0.271 1.271 11 H -0.274 1.274 12 C 0.367 3.633 13 O -0.489 6.489 14 C 0.045 3.955 15 H 0.095 0.905 16 C -0.142 4.142 17 C -0.115 4.115 18 C -0.153 4.153 19 C 0.046 3.954 20 O -0.400 6.400 21 H 0.074 0.926 22 H 0.019 0.981 23 H 0.058 0.942 24 H 0.267 0.733 25 H 0.058 0.942 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.495 4.095 13.778 14.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.019 4.019 3 H 0.065 0.935 4 C -0.579 4.579 5 H 0.060 0.940 6 C -0.176 4.176 7 N -0.546 5.546 8 Si 0.779 3.221 9 H -0.203 1.203 10 H -0.196 1.196 11 H -0.199 1.199 12 C 0.244 3.756 13 O -0.364 6.364 14 C -0.014 4.014 15 H 0.113 0.887 16 C -0.179 4.179 17 C -0.153 4.153 18 C -0.190 4.190 19 C -0.030 4.030 20 O -0.319 6.319 21 H 0.092 0.908 22 H 0.038 0.962 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.340 3.422 13.564 13.993 hybrid contribution 0.276 -0.357 -1.010 1.106 sum -0.065 3.065 12.554 12.923 Atomic orbital electron populations 1.21598 0.94641 0.99399 1.02135 1.19172 0.95715 0.96629 0.90363 0.93521 1.21242 1.32364 1.12681 0.91596 0.93975 1.25577 0.95006 0.95659 1.01358 1.69921 1.36744 1.23319 1.24570 0.85678 0.78816 0.78709 0.78884 1.20338 1.19591 1.19930 1.25501 0.71175 0.88237 0.90706 1.90214 1.39014 1.20188 1.86984 1.22699 0.92833 0.96323 0.89514 0.88717 1.22143 0.94786 1.02163 0.98829 1.21619 1.00932 0.99203 0.93511 1.22196 0.95507 1.01475 0.99829 1.22936 0.97894 0.98574 0.83609 1.88029 1.65021 1.50109 1.28780 0.90773 0.96160 0.92348 0.92362 0.92352 0.88976 0.89169 0.90134 0.92006 0.87869 0.91810 0.87659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 8.85 71.98 0.64 -4.94 16 2 C 0.00 0.01 2.56 -12.29 -0.03 -0.02 16 3 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 4 C -0.54 -31.66 8.33 25.60 0.21 -31.45 16 5 H 0.04 2.62 7.03 -2.91 -0.02 2.60 16 6 C 0.02 1.34 5.30 84.65 0.45 1.79 16 7 N -0.91 -50.83 11.32 21.45 0.24 -50.59 16 8 Si 0.95 44.89 29.54 68.60 2.03 46.92 16 9 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 12 C 0.37 17.39 5.56 29.10 0.16 17.55 16 13 O -0.49 -26.97 16.07 16.82 0.27 -26.70 16 14 C 0.04 1.61 2.99 29.88 0.09 1.70 16 15 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 16 C -0.14 -4.07 5.20 30.69 0.16 -3.91 16 17 C -0.12 -2.32 6.03 30.71 0.19 -2.13 16 18 C -0.15 -2.96 6.14 30.68 0.19 -2.77 16 19 C 0.05 1.10 6.84 72.01 0.49 1.59 16 20 O -0.40 -14.61 10.02 -130.70 -1.31 -15.92 16 21 H 0.07 3.76 6.07 -2.38 -0.01 3.75 16 22 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.06 2.18 5.71 -2.39 -0.01 2.17 16 24 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 25 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.09 2.53 5.85 -2.39 -0.01 2.51 16 27 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -67.98 260.46 4.87 -63.11 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: 1.09 Total: 5.76 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 2.54 Total: -22.58 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: 0.24 Total: -50.59 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -1.04 Total: -42.62 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -67.98 4.87 -63.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695018131.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.702 kcal (2) G-P(sol) polarization free energy of solvation -67.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds