Wall clock time and date at job start Mon Mar 30 2020 02:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 119.99611 * 2 1 4 4 H 1.48499 * 109.47584 * 270.00012 * 3 2 1 5 5 H 1.48499 * 109.47521 * 30.00842 * 3 2 1 6 6 H 1.48510 * 109.46934 * 150.00305 * 3 2 1 7 7 C 1.38948 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00076 * 359.97438 * 7 2 1 9 9 N 1.37104 * 119.99973 * 180.02562 * 7 2 1 10 10 C 1.34769 * 120.00048 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00077 * 4.94774 * 10 9 7 12 12 C 1.50701 * 120.00370 * 184.94604 * 10 9 7 13 13 H 1.08996 * 109.46429 * 24.40551 * 12 10 9 14 14 C 1.53000 * 109.47199 * 264.40823 * 12 10 9 15 15 N 1.46899 * 109.47324 * 65.43660 * 14 12 10 16 16 C 1.53001 * 109.47278 * 144.40129 * 12 10 9 17 17 C 1.53779 * 113.61487 * 300.00664 * 16 12 10 18 18 C 1.53783 * 87.07739 * 220.01764 * 17 16 12 19 19 C 1.53779 * 87.17539 * 25.38943 * 18 17 16 20 20 H 0.97001 * 120.00254 * 359.97438 * 1 2 3 21 21 H 0.96997 * 119.99502 * 359.97438 * 9 7 2 22 22 H 1.08999 * 109.46492 * 185.44244 * 14 12 10 23 23 H 1.09000 * 109.46828 * 305.43386 * 14 12 10 24 24 H 1.00895 * 110.99808 * 174.11391 * 15 14 12 25 25 H 1.00894 * 111.00158 * 298.07287 * 15 14 12 26 26 H 1.09002 * 112.84535 * 71.20333 * 16 12 10 27 27 H 1.09000 * 113.61745 * 105.47172 * 17 16 12 28 28 H 1.08996 * 113.61232 * 334.56050 * 17 16 12 29 29 H 1.09003 * 113.61424 * 139.97721 * 18 17 16 30 30 H 1.09000 * 113.61682 * 270.79833 * 18 17 16 31 31 H 1.09003 * 113.61159 * 89.15675 * 19 18 17 32 32 H 1.08998 * 113.61883 * 220.06183 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4455 2.6527 0.7002 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3704 0.0000 11 8 3.4508 -3.4189 -0.0911 12 6 5.5565 -2.3729 0.1131 13 1 5.8853 -1.4569 0.6039 14 6 6.1731 -2.4520 -1.2849 15 7 5.8507 -1.2290 -2.0322 16 6 6.0040 -3.5819 0.9371 17 6 5.4361 -3.5978 2.3661 18 6 6.8159 -4.0988 2.8244 19 6 7.3950 -3.4144 1.5751 20 1 -0.4850 0.8400 0.0004 21 1 3.8648 -0.3632 0.0004 22 1 7.2552 -2.5512 -1.1996 23 1 5.7694 -3.3167 -1.8116 24 1 6.3252 -1.2136 -2.9225 25 1 4.8537 -1.1306 -2.1520 26 1 5.8778 -4.5257 0.4065 27 1 4.6373 -4.3252 2.5105 28 1 5.1826 -2.6082 2.7461 29 1 7.1526 -3.6547 3.7612 30 1 6.9125 -5.1845 2.8119 31 1 7.6780 -2.3745 1.7385 32 1 8.1753 -3.9939 1.0818 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698428629.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:31 Heat of formation + Delta-G solvation = -27.942807 kcal Electronic energy + Delta-G solvation = -14557.929945 eV Core-core repulsion = 12132.572233 eV Total energy + Delta-G solvation = -2425.357711 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.51834 -37.50383 -34.53380 -33.91759 -31.56505 -29.71335 -25.53135 -25.00521 -23.91198 -21.73235 -19.28509 -19.06083 -18.02440 -16.19387 -15.81157 -15.07722 -14.83775 -14.73712 -13.70281 -13.57424 -13.12627 -12.84683 -12.29888 -12.20393 -12.17918 -11.76334 -11.29779 -11.18833 -11.04887 -10.52475 -10.30083 -10.04192 -9.91993 -9.86325 -9.51508 -8.52689 -8.36905 -8.13179 -6.28727 -3.79592 3.08878 3.13919 3.19617 3.77927 4.14322 4.54507 4.66767 4.90239 5.03144 5.07761 5.21105 5.31746 5.47881 5.59078 5.79066 5.85469 5.95793 6.00034 6.00544 6.08672 6.22133 6.28498 6.42889 6.55291 6.81220 7.30704 7.59356 7.63811 8.18681 8.63875 8.98353 9.47796 9.89407 10.84324 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.033686 B = 0.009639 C = 0.008870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.003656 B = 2904.038415 C = 3156.035991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.042 3.958 3 Si 0.878 3.122 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.306 4.306 8 H 0.118 0.882 9 N -0.587 5.587 10 C 0.456 3.544 11 O -0.579 6.579 12 C -0.091 4.091 13 H 0.083 0.917 14 C 0.076 3.924 15 N -0.856 5.856 16 C -0.083 4.083 17 C -0.131 4.131 18 C -0.143 4.143 19 C -0.137 4.137 20 H 0.273 0.727 21 H 0.374 0.626 22 H 0.073 0.927 23 H 0.032 0.968 24 H 0.338 0.662 25 H 0.348 0.652 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.463 -1.918 0.892 14.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.161 4.161 3 Si 0.704 3.296 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.135 0.865 9 N -0.225 5.225 10 C 0.242 3.758 11 O -0.463 6.463 12 C -0.113 4.113 13 H 0.101 0.899 14 C -0.055 4.055 15 N -0.386 5.386 16 C -0.102 4.102 17 C -0.168 4.168 18 C -0.181 4.181 19 C -0.175 4.175 20 H 0.083 0.917 21 H 0.208 0.792 22 H 0.092 0.908 23 H 0.051 0.949 24 H 0.150 0.850 25 H 0.161 0.839 26 H 0.111 0.889 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.169 -2.110 1.459 14.399 hybrid contribution 0.058 0.808 -0.710 1.077 sum 14.227 -1.302 0.749 14.306 Atomic orbital electron populations 1.69627 1.05680 1.27475 1.49444 1.25038 0.95469 0.98001 0.97586 0.86685 0.79860 0.83949 0.79083 1.19521 1.20321 1.19273 1.19453 0.79531 0.96492 1.48035 0.86464 1.42363 1.07368 1.06483 1.66335 1.19765 0.88190 0.84289 0.83515 1.90537 1.69942 1.31391 1.54417 1.21268 0.94389 0.99320 0.96348 0.89906 1.21637 0.99683 0.90965 0.93238 1.58779 1.15476 1.39661 1.24725 1.22272 0.95013 0.97993 0.94923 1.22841 0.96431 1.01820 0.95727 1.22811 0.97530 1.00128 0.97586 1.23035 0.96509 1.00836 0.97083 0.91675 0.79249 0.90835 0.94924 0.85036 0.83859 0.88901 0.91205 0.90334 0.91873 0.90541 0.90192 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.97 13.96 55.50 0.77 -25.20 16 2 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 3 Si 0.88 19.89 27.74 -169.99 -4.71 15.17 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -5.67 6.52 56.52 0.37 -5.30 16 7 C -0.31 -8.73 10.16 -14.93 -0.15 -8.88 16 8 H 0.12 3.81 7.40 -52.49 -0.39 3.43 16 9 N -0.59 -14.21 4.70 -10.96 -0.05 -14.26 16 10 C 0.46 10.45 5.51 -10.99 -0.06 10.39 16 11 O -0.58 -15.59 16.03 5.55 0.09 -15.50 16 12 C -0.09 -1.58 2.14 -91.77 -0.20 -1.78 16 13 H 0.08 1.39 7.94 -51.93 -0.41 0.98 16 14 C 0.08 1.16 6.20 -3.82 -0.02 1.13 16 15 N -0.86 -12.83 9.57 -10.37 -0.10 -12.93 16 16 C -0.08 -1.29 2.66 -89.72 -0.24 -1.53 16 17 C -0.13 -2.07 7.08 -25.92 -0.18 -2.25 16 18 C -0.14 -1.76 8.08 -25.92 -0.21 -1.97 16 19 C -0.14 -1.68 7.64 -25.83 -0.20 -1.87 16 20 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 21 H 0.37 8.29 5.75 -40.82 -0.23 8.05 16 22 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 23 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.34 4.09 9.08 -39.29 -0.36 3.73 16 25 H 0.35 5.98 7.93 -39.29 -0.31 5.67 16 26 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.94 7.97 -51.93 -0.41 0.53 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 267.18 15.07 4.03 4.03 Total: -1.00 -31.33 267.18 -6.00 -37.33 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -1.36 Total: -5.69 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.62 Total: -52.39 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: 0.09 Total: -15.50 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.71 Total: 15.17 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.33 -6.00 -37.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698428629.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.383 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds