Wall clock time and date at job start Mon Mar 30 2020 02:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00150 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99798 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99958 * 3 2 1 6 6 H 1.48502 * 109.46906 * 149.99865 * 3 2 1 7 7 C 1.38954 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00345 * 359.72362 * 7 2 1 9 9 N 1.37105 * 119.99815 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99904 * 179.72596 * 9 7 2 11 11 O 1.21288 * 119.99985 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99735 * 179.97438 * 10 9 7 13 13 H 1.09000 * 109.47333 * 299.99429 * 12 10 9 14 14 C 1.53008 * 109.47298 * 59.99683 * 12 10 9 15 15 N 1.46898 * 109.47136 * 185.00006 * 14 12 10 16 16 C 1.52998 * 109.46973 * 179.97438 * 12 10 9 17 17 C 1.53782 * 113.61410 * 159.13551 * 16 12 10 18 18 C 1.53952 * 87.02071 * 220.04964 * 17 16 12 19 19 C 1.53782 * 87.11168 * 25.36268 * 18 17 16 20 20 H 0.96995 * 119.99830 * 0.02562 * 1 2 3 21 21 H 0.97005 * 119.99906 * 359.71935 * 9 7 2 22 22 H 1.08995 * 109.46858 * 304.99712 * 14 12 10 23 23 H 1.09001 * 109.46834 * 64.99775 * 14 12 10 24 24 H 1.00897 * 110.99924 * 56.04411 * 15 14 12 25 25 H 1.00897 * 110.99854 * 180.02562 * 15 14 12 26 26 H 1.09003 * 112.85149 * 290.33096 * 16 12 10 27 27 H 1.09006 * 113.61602 * 334.57013 * 17 16 12 28 28 H 1.09004 * 113.61370 * 105.47336 * 17 16 12 29 29 H 1.08999 * 113.53817 * 270.81364 * 18 17 16 30 30 H 1.09002 * 113.74470 * 139.94838 * 18 17 16 31 31 H 1.08998 * 113.61126 * 220.09191 * 19 18 17 32 32 H 1.09002 * 113.61115 * 89.18578 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4689 -2.1386 0.0055 9 7 3.3799 -1.2034 0.0011 10 6 4.0537 -2.3707 0.0072 11 8 3.4472 -3.4210 0.0127 12 6 5.5607 -2.3707 0.0072 13 1 5.9241 -1.8616 -0.8855 14 6 6.0708 -1.6428 1.2526 15 7 7.5348 -1.5377 1.1932 16 6 6.0707 -3.8131 0.0154 17 6 7.5173 -3.9579 -0.4857 18 6 7.0540 -5.2356 -1.2088 19 6 5.6427 -4.6248 -1.2187 20 1 -0.4850 0.8400 -0.0004 21 1 3.8649 -0.3634 -0.0030 22 1 5.6362 -0.6440 1.2932 23 1 5.7824 -2.2010 2.1433 24 1 7.8303 -1.0805 0.3437 25 1 7.8963 -1.0607 2.0055 26 1 5.8827 -4.3232 0.9602 27 1 7.8270 -3.1612 -1.1622 28 1 8.2387 -4.1428 0.3104 29 1 7.1361 -6.1351 -0.5988 30 1 7.4840 -5.3577 -2.2030 31 1 4.8528 -5.3474 -1.0136 32 1 5.4389 -4.0108 -2.0960 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698428681.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:32 Heat of formation + Delta-G solvation = -49.146191 kcal Electronic energy + Delta-G solvation = -14503.849221 eV Core-core repulsion = 12077.572062 eV Total energy + Delta-G solvation = -2426.277159 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.03269 -38.97078 -36.04591 -35.78810 -33.70646 -30.98966 -27.03179 -26.24627 -25.27261 -23.14184 -21.09439 -20.33862 -20.05965 -17.83822 -17.00139 -16.61722 -16.16448 -15.92593 -15.71717 -14.96455 -14.68244 -14.44873 -14.08550 -13.93454 -13.18435 -13.13910 -12.98706 -12.47278 -12.36316 -12.06428 -12.00939 -11.54619 -11.32550 -11.10690 -10.93823 -10.29178 -10.24980 -9.48827 -8.44120 -6.04511 1.24578 1.30946 1.39629 1.92982 2.19062 2.86869 3.11886 3.65020 3.81864 3.88117 3.95880 4.13969 4.27311 4.35475 4.46632 4.57071 4.85567 4.90052 5.00003 5.03327 5.14624 5.25330 5.39787 5.51807 5.57610 5.75643 5.93684 6.24667 6.55964 6.72629 6.85786 7.37339 7.94540 8.73818 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.040005 B = 0.009096 C = 0.007839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.737911 B = 3077.612276 C = 3571.153782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.962 3.038 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.235 1.235 7 C -0.329 4.329 8 H 0.055 0.945 9 N -0.591 5.591 10 C 0.454 3.546 11 O -0.614 6.614 12 C -0.080 4.080 13 H 0.105 0.895 14 C 0.079 3.921 15 N -0.833 5.833 16 C -0.075 4.075 17 C -0.092 4.092 18 C -0.140 4.140 19 C -0.138 4.138 20 H 0.279 0.721 21 H 0.386 0.614 22 H 0.029 0.971 23 H 0.061 0.939 24 H 0.350 0.650 25 H 0.353 0.647 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.035 0.965 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.053 1.364 -0.173 19.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.213 4.213 3 Si 0.782 3.218 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.159 1.159 7 C -0.459 4.459 8 H 0.074 0.926 9 N -0.232 5.232 10 C 0.242 3.758 11 O -0.499 6.499 12 C -0.101 4.101 13 H 0.123 0.877 14 C -0.053 4.053 15 N -0.365 5.365 16 C -0.094 4.094 17 C -0.129 4.129 18 C -0.177 4.177 19 C -0.175 4.175 20 H 0.089 0.911 21 H 0.222 0.778 22 H 0.047 0.953 23 H 0.080 0.920 24 H 0.163 0.837 25 H 0.167 0.833 26 H 0.084 0.916 27 H 0.108 0.892 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 18.437 -0.030 -0.150 18.438 hybrid contribution -0.988 1.791 0.056 2.046 sum 17.448 1.760 -0.094 17.537 Atomic orbital electron populations 1.69803 1.08076 1.29227 1.50350 1.26099 0.96464 1.02607 0.96146 0.85409 0.79390 0.76989 0.80010 1.18020 1.19736 1.15855 1.19044 0.81602 0.94938 1.50277 0.92646 1.42125 1.05749 1.07567 1.67750 1.20994 0.90844 0.83170 0.80786 1.90532 1.71504 1.32716 1.55108 1.21284 0.88821 0.99349 1.00684 0.87714 1.21547 0.89770 0.97538 0.96407 1.58599 1.07555 1.61690 1.08688 1.22087 0.97571 0.92130 0.97601 1.22694 0.94115 0.96704 0.99377 1.22925 0.95133 0.98231 1.01416 1.22830 0.97158 0.99371 0.98172 0.91122 0.77813 0.95265 0.92013 0.83687 0.83329 0.91574 0.89228 0.90294 0.90315 0.90402 0.94558 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.81 13.96 21.66 0.30 -56.50 16 2 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 3 Si 0.96 39.15 27.73 68.60 1.90 41.06 16 4 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 6 H -0.24 -8.11 6.52 99.48 0.65 -7.46 16 7 C -0.33 -19.60 10.16 84.04 0.85 -18.75 16 8 H 0.06 3.92 7.39 -2.92 -0.02 3.90 16 9 N -0.59 -28.50 4.95 -306.99 -1.52 -30.02 16 10 C 0.45 21.06 6.92 87.66 0.61 21.66 16 11 O -0.61 -34.57 14.53 -3.05 -0.04 -34.62 16 12 C -0.08 -2.56 2.13 -11.54 -0.02 -2.58 16 13 H 0.10 2.89 7.98 -2.39 -0.02 2.87 16 14 C 0.08 2.10 6.12 86.31 0.53 2.63 16 15 N -0.83 -15.12 8.32 -186.71 -1.55 -16.68 16 16 C -0.07 -2.33 2.63 -10.27 -0.03 -2.36 16 17 C -0.09 -2.06 6.48 31.18 0.20 -1.86 16 18 C -0.14 -3.34 8.09 31.18 0.25 -3.09 16 19 C -0.14 -4.54 6.29 31.12 0.20 -4.34 16 20 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 21 H 0.39 15.64 5.12 -92.70 -0.47 15.16 16 22 H 0.03 0.77 7.43 -2.39 -0.02 0.75 16 23 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.35 5.12 8.99 -89.70 -0.81 4.31 16 25 H 0.35 5.06 9.08 -89.70 -0.81 4.25 16 26 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.09 1.74 7.99 -2.38 -0.02 1.72 16 28 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.04 1.40 8.00 -2.39 -0.02 1.38 16 32 H 0.06 2.18 8.10 -2.39 -0.02 2.16 16 Total: -1.00 -73.45 263.62 1.12 -72.32 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: -1.02 Total: 33.47 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 3.05 Total: -9.04 kcal Atomic # 7 Polarization: -100.43 SS G_CDS: -2.77 Total: -103.20 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.04 Total: -34.62 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 1.90 Total: 41.06 kcal Total: -73.45 1.12 -72.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698428681.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.176 kcal (2) G-P(sol) polarization free energy of solvation -73.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds