Wall clock time and date at job start Mon Mar 30 2020 02:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 110.50571 * 2 1 4 4 C 1.54682 * 110.69194 * 237.17445 * 2 1 3 5 5 O 1.44503 * 104.83690 * 265.19719 * 4 2 1 6 6 C 1.44622 * 105.40999 * 320.02641 * 5 4 2 7 7 C 1.53659 * 104.63923 * 39.72786 * 6 5 4 8 8 C 1.53298 * 110.76064 * 217.09336 * 7 6 5 9 9 C 1.55021 * 103.82032 * 236.28998 * 8 7 6 10 10 C 1.55067 * 102.11496 * 339.15099 * 9 8 7 11 11 H 1.09003 * 110.59325 * 277.97637 * 10 9 8 12 12 C 1.50696 * 110.59269 * 155.04884 * 10 9 8 13 13 H 1.08002 * 119.99851 * 0.02562 * 12 10 9 14 14 C 1.37880 * 119.99907 * 180.02562 * 12 10 9 15 15 N 1.31511 * 120.00446 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 119.99666 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47086 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47168 * 119.99921 * 16 14 12 19 19 H 1.48501 * 109.46778 * 239.99994 * 16 14 12 20 20 O 1.42814 * 111.11546 * 96.68186 * 7 6 5 21 21 H 1.09003 * 109.47557 * 297.25098 * 1 2 3 22 22 H 1.08997 * 109.47323 * 57.25928 * 1 2 3 23 23 H 1.09004 * 109.47212 * 177.25706 * 1 2 3 24 24 H 1.08996 * 110.36404 * 24.03474 * 4 2 1 25 25 H 1.08997 * 110.36550 * 146.35655 * 4 2 1 26 26 H 1.09004 * 110.40354 * 280.93955 * 6 5 4 27 27 H 1.09000 * 110.40428 * 158.51945 * 6 5 4 28 28 H 1.09004 * 110.55672 * 117.70506 * 8 7 6 29 29 H 1.09003 * 110.55864 * 354.87192 * 8 7 6 30 30 H 1.09005 * 110.87400 * 220.99838 * 9 8 7 31 31 H 1.08997 * 110.87429 * 97.30694 * 9 8 7 32 32 H 0.96994 * 120.00319 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9118 1.0210 0.0000 4 6 2.0765 -0.7844 -1.2160 5 8 2.3166 -2.1193 -0.7176 6 6 2.8720 -1.9413 0.6058 7 6 2.0699 -0.7784 1.2104 8 6 2.9715 0.1140 2.0710 9 6 2.2744 0.1191 3.4556 10 6 0.8253 -0.2959 3.0919 11 1 0.2574 0.5646 2.7379 12 6 0.1433 -0.9322 4.2755 13 1 0.6735 -1.0408 5.2101 14 6 -1.1576 -1.3757 4.1653 15 7 -1.8031 -1.2440 3.0271 16 14 -2.0031 -2.1638 5.6327 17 1 -1.0676 -2.1942 6.7856 18 1 -3.2079 -1.3739 5.9929 19 1 -2.4058 -3.5505 5.2860 20 8 1.0031 -1.2598 2.0288 21 1 -0.3634 0.4706 0.9136 22 1 -0.3634 0.5558 -0.8644 23 1 -0.3634 -1.0265 -0.0492 24 1 1.3375 -0.8058 -2.0169 25 1 3.0063 -0.3381 -1.5685 26 1 3.9288 -1.6817 0.5428 27 1 2.7367 -2.8454 1.1995 28 1 3.0152 1.1230 1.6607 29 1 3.9716 -0.3127 2.1476 30 1 2.2938 1.1158 3.8965 31 1 2.7316 -0.6111 4.1233 32 1 -2.7183 -1.5557 2.9496 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699508967.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:43 Heat of formation + Delta-G solvation = -115.962500 kcal Electronic energy + Delta-G solvation = -15210.653681 eV Core-core repulsion = 12749.186399 eV Total energy + Delta-G solvation = -2461.467283 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.39143 -38.42630 -34.76377 -33.57099 -32.72301 -30.93923 -27.91575 -27.14063 -24.68272 -22.93019 -21.95185 -20.63695 -18.65805 -17.32713 -16.86779 -16.73822 -16.39370 -15.97381 -15.12401 -14.66397 -14.50787 -14.10907 -13.82212 -13.54054 -13.14819 -12.87220 -12.59865 -12.46639 -12.30575 -12.07638 -11.98524 -11.63637 -11.45315 -11.14764 -10.96090 -10.71769 -10.68581 -9.81142 -8.14683 -6.34049 1.38638 1.40799 1.52198 2.40275 2.97676 3.11425 3.55943 3.69597 3.89067 4.03863 4.13818 4.19383 4.41338 4.54762 4.60737 4.72633 4.80095 4.81883 4.91938 4.95357 4.96526 5.04633 5.19285 5.27038 5.29599 5.52903 5.63111 5.80377 5.92873 6.19939 6.63734 7.01455 7.40756 8.92460 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.041743 B = 0.010572 C = 0.009746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.607446 B = 2647.790244 C = 2872.302249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.138 4.138 3 H 0.101 0.899 4 C 0.052 3.948 5 O -0.402 6.402 6 C 0.056 3.944 7 C 0.049 3.951 8 C -0.131 4.131 9 C -0.144 4.144 10 C 0.202 3.798 11 H 0.001 0.999 12 C -0.553 4.553 13 H 0.062 0.938 14 C 0.025 3.975 15 N -0.893 5.893 16 Si 0.958 3.042 17 H -0.263 1.263 18 H -0.276 1.276 19 H -0.284 1.284 20 O -0.368 6.368 21 H 0.037 0.963 22 H 0.061 0.939 23 H 0.026 0.974 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.086 3.814 -5.198 11.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.157 4.157 3 H 0.119 0.881 4 C -0.024 4.024 5 O -0.321 6.321 6 C -0.020 4.020 7 C 0.008 3.992 8 C -0.168 4.168 9 C -0.182 4.182 10 C 0.147 3.853 11 H 0.019 0.981 12 C -0.591 4.591 13 H 0.080 0.920 14 C -0.178 4.178 15 N -0.530 5.530 16 Si 0.783 3.217 17 H -0.187 1.187 18 H -0.201 1.201 19 H -0.210 1.210 20 O -0.287 6.287 21 H 0.056 0.944 22 H 0.080 0.920 23 H 0.045 0.955 24 H 0.112 0.888 25 H 0.106 0.894 26 H 0.116 0.884 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.764 3.395 -5.430 10.854 hybrid contribution -0.860 -0.209 0.891 1.255 sum 7.904 3.186 -4.540 9.655 Atomic orbital electron populations 1.21350 0.94667 1.00410 1.00420 1.23007 0.96912 1.00316 0.95445 0.88051 1.23641 1.00906 0.81993 0.95871 1.89089 1.84220 1.27865 1.30946 1.23569 0.96918 0.98529 0.83026 1.23037 0.89341 0.94136 0.92683 1.22914 0.99061 1.00297 0.94543 1.23158 0.96707 1.01164 0.97144 1.20619 0.91538 0.87956 0.85157 0.98115 1.21457 0.97942 1.42769 0.96912 0.91989 1.25898 0.98122 0.95409 0.98329 1.70158 1.11250 1.45580 1.26029 0.85534 0.78515 0.77985 0.79714 1.18709 1.20107 1.21017 1.89139 1.51394 1.47201 1.40976 0.94389 0.91991 0.95470 0.88827 0.89386 0.88388 0.90524 0.89297 0.88859 0.90758 0.92131 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.56 8.18 71.98 0.59 -3.97 16 2 C -0.14 -4.71 3.36 -9.99 -0.03 -4.75 16 3 H 0.10 2.89 7.16 -2.38 -0.02 2.87 16 4 C 0.05 1.53 7.21 72.56 0.52 2.06 16 5 O -0.40 -14.79 11.66 -148.98 -1.74 -16.53 16 6 C 0.06 1.95 6.89 72.20 0.50 2.44 16 7 C 0.05 1.90 1.14 -10.24 -0.01 1.88 16 8 C -0.13 -4.19 6.28 31.39 0.20 -3.99 16 9 C -0.14 -5.73 6.57 31.99 0.21 -5.52 16 10 C 0.20 10.44 2.70 30.55 0.08 10.52 16 11 H 0.00 0.07 6.69 -2.39 -0.02 0.05 16 12 C -0.55 -31.46 8.81 25.60 0.23 -31.24 16 13 H 0.06 3.42 7.76 -2.91 -0.02 3.40 16 14 C 0.03 1.44 5.44 84.66 0.46 1.90 16 15 N -0.89 -53.79 13.12 21.45 0.28 -53.50 16 16 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 17 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 20 O -0.37 -19.03 8.94 -148.98 -1.33 -20.37 16 21 H 0.04 1.81 6.13 -2.39 -0.01 1.80 16 22 H 0.06 2.08 8.14 -2.39 -0.02 2.07 16 23 H 0.03 1.28 7.96 -2.38 -0.02 1.26 16 24 H 0.09 2.58 7.88 -2.39 -0.02 2.56 16 25 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.10 2.59 7.51 -2.38 -0.02 2.58 16 27 H 0.08 2.92 8.08 -2.39 -0.02 2.90 16 28 H 0.09 2.42 7.16 -2.39 -0.02 2.41 16 29 H 0.09 2.44 7.40 -2.39 -0.02 2.42 16 30 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 31 H 0.06 2.43 8.03 -2.39 -0.02 2.41 16 32 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -67.28 255.66 3.07 -64.21 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 1.09 Total: 10.21 kcal Atomic # 6 Polarization: -33.41 SS G_CDS: 2.74 Total: -30.67 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 0.28 Total: -53.50 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -3.07 Total: -36.89 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -67.28 3.07 -64.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699508967.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.750 kcal (2) G-P(sol) polarization free energy of solvation -67.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds