Wall clock time and date at job start Mon Mar 30 2020 02:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.65277 * 2 1 4 4 C 1.54784 * 110.59378 * 237.09821 * 2 1 3 5 5 O 1.44545 * 104.85191 * 217.71168 * 4 2 1 6 6 C 1.44719 * 105.48825 * 39.70508 * 5 4 2 7 7 C 1.53247 * 104.53211 * 320.67253 * 6 5 4 8 8 C 1.53721 * 111.27815 * 143.79719 * 7 6 5 9 9 C 1.55031 * 101.92003 * 86.12761 * 8 7 6 10 10 C 1.54179 * 104.25295 * 19.67585 * 9 8 7 11 11 H 1.09000 * 109.85935 * 242.28051 * 10 9 8 12 12 C 1.50706 * 109.95758 * 121.26797 * 10 9 8 13 13 H 1.08000 * 120.00398 * 0.52188 * 12 10 9 14 14 C 1.37881 * 119.99700 * 180.52390 * 12 10 9 15 15 N 1.31516 * 119.99916 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 120.00044 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46900 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.46891 * 119.99476 * 16 14 12 19 19 H 1.48488 * 109.47246 * 239.99882 * 16 14 12 20 20 O 1.42892 * 111.92714 * 261.29485 * 7 6 5 21 21 H 1.09008 * 109.47002 * 181.44964 * 1 2 3 22 22 H 1.08998 * 109.47107 * 301.44609 * 1 2 3 23 23 H 1.09006 * 109.47035 * 61.44756 * 1 2 3 24 24 H 1.09007 * 110.36157 * 98.87147 * 4 2 1 25 25 H 1.08999 * 110.45896 * 336.60239 * 4 2 1 26 26 H 1.09001 * 110.42500 * 79.43508 * 6 5 4 27 27 H 1.08997 * 110.42113 * 201.91132 * 6 5 4 28 28 H 1.09000 * 110.94458 * 204.28801 * 8 7 6 29 29 H 1.09000 * 110.93370 * 327.97144 * 8 7 6 30 30 H 1.09004 * 110.47230 * 260.98015 * 9 8 7 31 31 H 1.09000 * 110.58314 * 138.42570 * 9 8 7 32 32 H 0.97003 * 119.99969 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0200 0.0000 4 6 2.0744 -0.7871 -1.2165 5 8 3.2394 -1.4818 -0.7171 6 6 2.8796 -1.9358 0.6091 7 6 2.0692 -0.7795 1.2047 8 6 0.9249 -1.2983 2.0903 9 6 1.6340 -1.4778 3.4572 10 6 2.8953 -0.5978 3.3490 11 1 3.7878 -1.2180 3.4321 12 6 2.8918 0.4426 4.4393 13 1 2.0800 0.4765 5.1507 14 6 3.9251 1.3511 4.5286 15 7 4.9140 1.3094 3.6625 16 14 3.9205 2.6411 5.8796 17 1 2.7054 2.4763 6.7172 18 1 5.1307 2.4773 6.7246 19 1 3.9215 3.9955 5.2708 20 8 2.8640 0.0441 2.0602 21 1 -0.3633 -1.0274 0.0260 22 1 -0.3633 0.5361 0.8767 23 1 -0.3633 0.4912 -0.9027 24 1 2.3554 -0.1020 -2.0166 25 1 1.3311 -1.5004 -1.5725 26 1 2.2694 -2.8371 0.5502 27 1 3.7743 -2.1193 1.2041 28 1 0.1230 -0.5634 2.1610 29 1 0.5467 -2.2510 1.7195 30 1 1.9091 -2.5215 3.6098 31 1 0.9950 -1.1303 4.2690 32 1 5.6408 1.9488 3.7251 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699508970.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:46 Heat of formation + Delta-G solvation = -114.973327 kcal Electronic energy + Delta-G solvation = -15097.799705 eV Core-core repulsion = 12636.375316 eV Total energy + Delta-G solvation = -2461.424389 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.50771 -38.47984 -34.99009 -34.17166 -32.61476 -30.45426 -27.87858 -27.08337 -25.35235 -23.10863 -21.92539 -20.12761 -18.80504 -17.56240 -16.95939 -16.52305 -16.34072 -15.96756 -15.78357 -14.99447 -14.48013 -13.94507 -13.89478 -13.43775 -13.00491 -12.89709 -12.78898 -12.55601 -12.28593 -12.13458 -11.95573 -11.77928 -11.32909 -11.28056 -11.01827 -10.81648 -10.67998 -9.85378 -8.16554 -6.37927 1.37698 1.38770 1.51493 2.38542 2.99732 3.03483 3.43882 3.66988 3.89492 3.98599 4.08747 4.19229 4.36527 4.48969 4.56593 4.59062 4.70742 4.80026 4.82388 4.92267 4.98785 5.10267 5.12767 5.24960 5.35327 5.40041 5.52240 5.71381 5.83877 6.16359 6.56908 7.01772 7.38582 8.91557 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.042245 B = 0.009846 C = 0.009496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.648901 B = 2843.148521 C = 2948.037478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.118 4.118 3 H 0.060 0.940 4 C 0.050 3.950 5 O -0.404 6.404 6 C 0.038 3.962 7 C 0.051 3.949 8 C -0.127 4.127 9 C -0.142 4.142 10 C 0.195 3.805 11 H -0.014 1.014 12 C -0.553 4.553 13 H 0.067 0.933 14 C 0.018 3.982 15 N -0.906 5.906 16 Si 0.963 3.037 17 H -0.259 1.259 18 H -0.276 1.276 19 H -0.282 1.282 20 O -0.372 6.372 21 H 0.079 0.921 22 H 0.055 0.945 23 H 0.077 0.923 24 H 0.098 0.902 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.256 -5.115 -6.608 13.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.137 4.137 3 H 0.078 0.922 4 C -0.026 4.026 5 O -0.324 6.324 6 C -0.039 4.039 7 C 0.010 3.990 8 C -0.164 4.164 9 C -0.180 4.180 10 C 0.139 3.861 11 H 0.003 0.997 12 C -0.591 4.591 13 H 0.085 0.915 14 C -0.184 4.184 15 N -0.543 5.543 16 Si 0.787 3.213 17 H -0.182 1.182 18 H -0.202 1.202 19 H -0.208 1.208 20 O -0.292 6.292 21 H 0.098 0.902 22 H 0.074 0.926 23 H 0.096 0.904 24 H 0.116 0.884 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.788 -4.888 -6.818 12.891 hybrid contribution 0.605 0.719 0.945 1.333 sum -9.182 -4.168 -5.873 11.670 Atomic orbital electron populations 1.21820 0.90961 1.03342 1.02571 1.22354 0.98576 0.99490 0.93305 0.92173 1.23755 0.87742 0.95285 0.95807 1.89106 1.37907 1.74647 1.30701 1.23789 0.99577 0.97127 0.83434 1.23108 0.91493 0.91476 0.92950 1.23069 0.97255 1.02519 0.93601 1.23012 0.97186 0.99341 0.98467 1.20285 0.92217 0.91512 0.82090 0.99679 1.21683 1.07546 1.17262 1.12581 0.91491 1.26033 0.94743 0.99667 0.97913 1.70217 1.10611 1.36689 1.36817 0.85453 0.78591 0.78402 0.78843 1.18223 1.20166 1.20766 1.89069 1.70962 1.46588 1.22580 0.90242 0.92611 0.90386 0.88368 0.89053 0.88903 0.91859 0.89450 0.87914 0.91199 0.91314 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 7.84 71.98 0.56 -2.50 16 2 C -0.12 -3.92 3.55 -10.09 -0.04 -3.95 16 3 H 0.06 2.36 8.03 -2.39 -0.02 2.34 16 4 C 0.05 1.45 7.22 72.59 0.52 1.98 16 5 O -0.40 -15.48 11.66 -148.98 -1.74 -17.21 16 6 C 0.04 1.41 6.75 72.06 0.49 1.89 16 7 C 0.05 2.01 1.12 -10.37 -0.01 2.00 16 8 C -0.13 -4.19 4.75 31.53 0.15 -4.04 16 9 C -0.14 -5.72 6.56 31.69 0.21 -5.51 16 10 C 0.19 10.43 2.88 30.25 0.09 10.52 16 11 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 12 C -0.55 -32.03 8.79 25.60 0.22 -31.80 16 13 H 0.07 3.69 7.34 -2.91 -0.02 3.67 16 14 C 0.02 1.06 5.41 84.66 0.46 1.51 16 15 N -0.91 -57.15 12.92 21.45 0.28 -56.87 16 16 Si 0.96 45.12 29.54 68.60 2.03 47.15 16 17 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 20 O -0.37 -20.32 10.10 -148.98 -1.50 -21.83 16 21 H 0.08 1.52 7.36 -2.38 -0.02 1.50 16 22 H 0.05 1.43 6.78 -2.39 -0.02 1.41 16 23 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 24 H 0.10 2.55 8.14 -2.38 -0.02 2.53 16 25 H 0.09 1.99 7.87 -2.39 -0.02 1.97 16 26 H 0.09 2.72 7.58 -2.39 -0.02 2.70 16 27 H 0.06 2.74 7.85 -2.39 -0.02 2.72 16 28 H 0.09 2.74 5.82 -2.39 -0.01 2.72 16 29 H 0.10 2.55 7.57 -2.39 -0.02 2.54 16 30 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.07 2.72 7.40 -2.39 -0.02 2.70 16 32 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -71.83 254.90 2.81 -69.02 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 1.09 Total: 9.66 kcal Atomic # 6 Polarization: -32.57 SS G_CDS: 2.66 Total: -29.91 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.28 Total: -56.87 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -3.24 Total: -39.04 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -71.83 2.81 -69.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699508970.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.952 kcal (2) G-P(sol) polarization free energy of solvation -71.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds