Wall clock time and date at job start Mon Mar 30 2020 02:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 110.61739 * 2 1 4 4 C 1.54684 * 110.56459 * 237.17833 * 2 1 3 5 5 O 1.44490 * 104.83238 * 217.58263 * 4 2 1 6 6 C 1.44620 * 105.41612 * 39.97880 * 5 4 2 7 7 C 1.53674 * 104.63681 * 320.27519 * 6 5 4 8 8 C 1.53300 * 110.73595 * 263.91269 * 7 6 5 9 9 C 1.55023 * 103.81872 * 239.57739 * 8 7 6 10 10 C 1.55066 * 102.11236 * 20.85029 * 9 8 7 11 11 H 1.09004 * 110.71412 * 82.08960 * 10 9 8 12 12 C 1.50694 * 110.58827 * 204.95026 * 10 9 8 13 13 H 1.08000 * 120.00563 * 355.68125 * 12 10 9 14 14 C 1.37885 * 119.99902 * 175.68288 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 O 1.42803 * 111.10156 * 143.52435 * 7 6 5 21 21 H 1.08998 * 109.47164 * 297.18018 * 1 2 3 22 22 H 1.09003 * 109.46802 * 57.18171 * 1 2 3 23 23 H 1.09003 * 109.47025 * 177.18106 * 1 2 3 24 24 H 1.09004 * 110.36195 * 98.74285 * 4 2 1 25 25 H 1.09001 * 110.45926 * 336.46909 * 4 2 1 26 26 H 1.09006 * 110.40627 * 201.48801 * 6 5 4 27 27 H 1.08998 * 110.40207 * 79.06176 * 6 5 4 28 28 H 1.09002 * 110.55140 * 358.16398 * 8 7 6 29 29 H 1.08997 * 110.55863 * 120.84484 * 8 7 6 30 30 H 1.08998 * 110.87121 * 262.69781 * 9 8 7 31 31 H 1.08998 * 110.87197 * 139.00533 * 9 8 7 32 32 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9139 1.0202 0.0000 4 6 2.0734 -0.7850 -1.2171 5 8 3.2397 -1.4779 -0.7196 6 6 2.8786 -1.9376 0.6032 7 6 2.0699 -0.7799 1.2093 8 6 2.9659 0.1132 2.0751 9 6 2.3132 0.0423 3.4794 10 6 1.4843 -1.2650 3.3873 11 1 2.1142 -2.1348 3.5740 12 6 0.3305 -1.2302 4.3560 13 1 0.2220 -0.3991 5.0371 14 6 -0.5867 -2.2596 4.3730 15 7 -0.4548 -3.2716 3.5434 16 14 -2.0165 -2.2169 5.5743 17 1 -2.8524 -3.4307 5.3923 18 1 -1.4945 -2.1786 6.9640 19 1 -2.8396 -1.0071 5.3212 20 8 1.0035 -1.2688 2.0236 21 1 -0.3633 0.4694 0.9142 22 1 -0.3633 0.5570 -0.8637 23 1 -0.3633 -1.0264 -0.0505 24 1 2.3520 -0.0991 -2.0171 25 1 1.3306 -1.4993 -1.5722 26 1 3.7729 -2.1280 1.1967 27 1 2.2656 -2.8365 0.5389 28 1 3.9825 -0.2790 2.1051 29 1 2.9627 1.1367 1.7003 30 1 1.6651 0.9019 3.6502 31 1 3.0729 -0.0334 4.2573 32 1 -1.0998 -3.9959 3.5556 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699508972.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:48 Heat of formation + Delta-G solvation = -97.488491 kcal Electronic energy + Delta-G solvation = -15130.147071 eV Core-core repulsion = 12669.480882 eV Total energy + Delta-G solvation = -2460.666189 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.84567 -36.85347 -32.98239 -32.13560 -31.01952 -28.98458 -26.23823 -25.53723 -23.35944 -21.18779 -20.32071 -19.10211 -16.62565 -15.75761 -15.39652 -15.01241 -14.77065 -14.46966 -13.58069 -12.97073 -12.78071 -12.58970 -12.22581 -11.79835 -11.61725 -11.43413 -10.91137 -10.71903 -10.61686 -10.47880 -10.38555 -10.17836 -9.89105 -9.68343 -9.19582 -9.11292 -8.61292 -8.04579 -6.04735 -4.17270 3.30123 3.34983 3.37139 4.37197 4.40443 4.88263 5.04470 5.21747 5.34922 5.49831 5.61675 5.66555 5.85574 5.95109 6.02685 6.12843 6.17774 6.27543 6.31332 6.39114 6.58628 6.61861 6.70263 6.73130 6.79183 6.99317 7.22528 7.49962 7.85545 8.19565 8.54130 8.94591 9.53234 11.02955 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.042866 B = 0.010109 C = 0.009593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.042534 B = 2769.250929 C = 2918.140798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.118 4.118 3 H 0.078 0.922 4 C 0.050 3.950 5 O -0.384 6.384 6 C 0.035 3.965 7 C 0.069 3.931 8 C -0.140 4.140 9 C -0.147 4.147 10 C 0.207 3.793 11 H 0.026 0.974 12 C -0.531 4.531 13 H 0.063 0.937 14 C 0.078 3.922 15 N -0.863 5.863 16 Si 0.892 3.108 17 H -0.286 1.286 18 H -0.276 1.276 19 H -0.275 1.275 20 O -0.328 6.328 21 H 0.066 0.934 22 H 0.039 0.961 23 H 0.062 0.938 24 H 0.082 0.918 25 H 0.058 0.942 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.967 5.009 -5.601 8.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.137 4.137 3 H 0.096 0.904 4 C -0.027 4.027 5 O -0.303 6.303 6 C -0.042 4.042 7 C 0.027 3.973 8 C -0.177 4.177 9 C -0.185 4.185 10 C 0.152 3.848 11 H 0.044 0.956 12 C -0.569 4.569 13 H 0.082 0.918 14 C -0.128 4.128 15 N -0.499 5.499 16 Si 0.719 3.281 17 H -0.212 1.212 18 H -0.201 1.201 19 H -0.201 1.201 20 O -0.246 6.246 21 H 0.085 0.915 22 H 0.058 0.942 23 H 0.081 0.919 24 H 0.101 0.899 25 H 0.077 0.923 26 H 0.104 0.896 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.885 4.723 -5.841 8.457 hybrid contribution -0.739 0.044 0.765 1.065 sum 3.146 4.768 -5.076 7.641 Atomic orbital electron populations 1.21451 0.93160 1.02592 1.00906 1.22557 0.97917 0.98884 0.94316 0.90394 1.23514 0.88081 0.94850 0.96268 1.89048 1.35614 1.74316 1.31360 1.23940 0.99384 0.97863 0.83038 1.22567 0.89587 0.92376 0.92728 1.22933 0.98652 0.99278 0.96879 1.23269 0.99009 1.01729 0.94522 1.20749 0.93343 0.90362 0.80368 0.95626 1.20943 1.11314 1.06738 1.17871 0.91846 1.25063 0.97659 0.95043 0.95003 1.70019 1.35582 1.08869 1.35408 0.86680 0.82411 0.77551 0.81455 1.21176 1.20108 1.20077 1.89226 1.32342 1.84194 1.18875 0.91466 0.94207 0.91865 0.89948 0.92343 0.89615 0.91226 0.91814 0.91850 0.91690 0.92251 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 8.21 37.16 0.31 -1.89 16 2 C -0.12 -2.05 3.37 -89.37 -0.30 -2.35 16 3 H 0.08 1.23 7.17 -51.93 -0.37 0.86 16 4 C 0.05 0.80 7.21 38.04 0.27 1.07 16 5 O -0.38 -7.07 11.66 -35.23 -0.41 -7.48 16 6 C 0.03 0.67 6.92 37.51 0.26 0.93 16 7 C 0.07 1.40 1.13 -89.75 -0.10 1.30 16 8 C -0.14 -2.57 6.30 -25.51 -0.16 -2.73 16 9 C -0.15 -3.06 6.57 -24.57 -0.16 -3.22 16 10 C 0.21 5.24 3.17 -26.79 -0.09 5.16 16 11 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 12 C -0.53 -14.69 8.83 -34.44 -0.30 -15.00 16 13 H 0.06 1.70 7.78 -52.49 -0.41 1.29 16 14 C 0.08 2.19 5.42 -17.82 -0.10 2.09 16 15 N -0.86 -25.19 12.94 55.43 0.72 -24.47 16 16 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 O -0.33 -8.16 8.45 -35.23 -0.30 -8.46 16 21 H 0.07 1.32 7.90 -51.93 -0.41 0.91 16 22 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 1.24 7.90 -51.93 -0.41 0.83 16 24 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.06 0.93 7.83 -51.93 -0.41 0.52 16 26 H 0.09 1.56 7.41 -51.93 -0.38 1.17 16 27 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 28 H 0.06 1.08 7.31 -51.93 -0.38 0.70 16 29 H 0.06 1.05 7.17 -51.93 -0.37 0.68 16 30 H 0.06 1.35 8.04 -51.93 -0.42 0.93 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 258.53 15.07 3.90 3.90 Total: -1.00 -29.44 258.53 -6.30 -35.74 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -4.81 Total: -0.74 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -0.37 Total: -14.63 kcal Atomic # 7 Polarization: -25.19 SS G_CDS: 0.72 Total: -24.47 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.71 Total: -15.93 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.44 -6.30 -35.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699508972.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.749 kcal (2) G-P(sol) polarization free energy of solvation -29.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds