Wall clock time and date at job start Mon Mar 30 2020 02:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 110.61739 * 2 1 4 4 C 1.54684 * 110.56459 * 237.17833 * 2 1 3 5 5 O 1.44490 * 104.83238 * 217.58263 * 4 2 1 6 6 C 1.44620 * 105.41612 * 39.97880 * 5 4 2 7 7 C 1.53674 * 104.63681 * 320.27519 * 6 5 4 8 8 C 1.53300 * 110.73595 * 263.91269 * 7 6 5 9 9 C 1.55023 * 103.81872 * 239.57739 * 8 7 6 10 10 C 1.55066 * 102.11236 * 20.85029 * 9 8 7 11 11 H 1.09004 * 110.71412 * 82.08960 * 10 9 8 12 12 C 1.50694 * 110.58827 * 204.95026 * 10 9 8 13 13 H 1.08000 * 120.00563 * 355.68125 * 12 10 9 14 14 C 1.37885 * 119.99902 * 175.68288 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 O 1.42803 * 111.10156 * 143.52435 * 7 6 5 21 21 H 1.08998 * 109.47164 * 297.18018 * 1 2 3 22 22 H 1.09003 * 109.46802 * 57.18171 * 1 2 3 23 23 H 1.09003 * 109.47025 * 177.18106 * 1 2 3 24 24 H 1.09004 * 110.36195 * 98.74285 * 4 2 1 25 25 H 1.09001 * 110.45926 * 336.46909 * 4 2 1 26 26 H 1.09006 * 110.40627 * 201.48801 * 6 5 4 27 27 H 1.08998 * 110.40207 * 79.06176 * 6 5 4 28 28 H 1.09002 * 110.55140 * 358.16398 * 8 7 6 29 29 H 1.08997 * 110.55863 * 120.84484 * 8 7 6 30 30 H 1.08998 * 110.87121 * 262.69781 * 9 8 7 31 31 H 1.08998 * 110.87197 * 139.00533 * 9 8 7 32 32 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9139 1.0202 0.0000 4 6 2.0734 -0.7850 -1.2171 5 8 3.2397 -1.4779 -0.7196 6 6 2.8786 -1.9376 0.6032 7 6 2.0699 -0.7799 1.2093 8 6 2.9659 0.1132 2.0751 9 6 2.3132 0.0423 3.4794 10 6 1.4843 -1.2650 3.3873 11 1 2.1142 -2.1348 3.5740 12 6 0.3305 -1.2302 4.3560 13 1 0.2220 -0.3991 5.0371 14 6 -0.5867 -2.2596 4.3730 15 7 -0.4548 -3.2716 3.5434 16 14 -2.0165 -2.2169 5.5743 17 1 -2.8524 -3.4307 5.3923 18 1 -1.4945 -2.1786 6.9640 19 1 -2.8396 -1.0071 5.3212 20 8 1.0035 -1.2688 2.0236 21 1 -0.3633 0.4694 0.9142 22 1 -0.3633 0.5570 -0.8637 23 1 -0.3633 -1.0264 -0.0505 24 1 2.3520 -0.0991 -2.0171 25 1 1.3306 -1.4993 -1.5722 26 1 3.7729 -2.1280 1.1967 27 1 2.2656 -2.8365 0.5389 28 1 3.9825 -0.2790 2.1051 29 1 2.9627 1.1367 1.7003 30 1 1.6651 0.9019 3.6502 31 1 3.0729 -0.0334 4.2573 32 1 -1.0998 -3.9959 3.5556 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699508972.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:48 Heat of formation + Delta-G solvation = -116.736835 kcal Electronic energy + Delta-G solvation = -15130.981742 eV Core-core repulsion = 12669.480882 eV Total energy + Delta-G solvation = -2461.500860 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.39495 -38.48700 -34.85395 -33.80505 -32.71557 -30.68910 -28.00874 -27.01680 -25.10857 -22.71631 -22.05996 -20.64682 -18.65966 -17.29115 -16.87358 -16.75171 -16.45574 -16.20531 -15.28708 -14.45525 -14.35397 -14.16277 -14.01752 -13.58972 -13.13628 -12.99796 -12.75090 -12.45081 -12.28979 -12.13676 -11.93925 -11.84364 -11.48433 -11.20865 -11.01186 -10.75557 -10.64034 -9.90449 -8.16171 -6.35930 1.40472 1.42783 1.50334 2.40078 2.90524 3.11557 3.49011 3.63928 3.84499 3.95648 4.10639 4.23661 4.37856 4.49644 4.57701 4.63353 4.72880 4.77027 4.83840 4.91358 4.99129 5.08761 5.13047 5.21261 5.26910 5.50084 5.52617 5.73947 5.80561 6.16449 6.58275 6.96924 7.39254 8.91745 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.042866 B = 0.010109 C = 0.009593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.042534 B = 2769.250929 C = 2918.140798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.116 4.116 3 H 0.105 0.895 4 C 0.049 3.951 5 O -0.387 6.387 6 C 0.039 3.961 7 C 0.051 3.949 8 C -0.130 4.130 9 C -0.139 4.139 10 C 0.198 3.802 11 H -0.007 1.007 12 C -0.552 4.552 13 H 0.066 0.934 14 C 0.025 3.975 15 N -0.901 5.901 16 Si 0.959 3.041 17 H -0.284 1.284 18 H -0.265 1.265 19 H -0.270 1.270 20 O -0.356 6.356 21 H 0.042 0.958 22 H 0.076 0.924 23 H 0.032 0.968 24 H 0.122 0.878 25 H 0.054 0.946 26 H 0.095 0.905 27 H 0.041 0.959 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.362 6.782 -6.159 10.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.134 4.134 3 H 0.123 0.877 4 C -0.028 4.028 5 O -0.306 6.306 6 C -0.038 4.038 7 C 0.010 3.990 8 C -0.167 4.167 9 C -0.176 4.176 10 C 0.142 3.858 11 H 0.011 0.989 12 C -0.589 4.589 13 H 0.084 0.916 14 C -0.177 4.177 15 N -0.538 5.538 16 Si 0.783 3.217 17 H -0.210 1.210 18 H -0.189 1.189 19 H -0.195 1.195 20 O -0.275 6.275 21 H 0.061 0.939 22 H 0.095 0.905 23 H 0.051 0.949 24 H 0.140 0.860 25 H 0.073 0.927 26 H 0.113 0.887 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.291 6.510 -6.401 10.088 hybrid contribution -0.833 -0.510 0.883 1.317 sum 3.457 6.001 -5.518 8.855 Atomic orbital electron populations 1.21355 0.93796 1.00951 1.01283 1.22626 0.97371 1.00010 0.93404 0.87711 1.23706 0.87395 0.95120 0.96541 1.89045 1.36481 1.74497 1.30553 1.23775 0.99229 0.96771 0.83997 1.22937 0.89250 0.93232 0.93577 1.22916 0.98692 1.00454 0.94648 1.23134 0.98805 0.98910 0.96797 1.20630 0.92895 0.91516 0.80720 0.98944 1.21375 1.12081 1.06796 1.18661 0.91622 1.25913 1.00417 0.94643 0.96736 1.70163 1.36669 1.09640 1.37305 0.85619 0.78985 0.77574 0.79487 1.20952 1.18927 1.19501 1.89152 1.34393 1.84956 1.18986 0.93921 0.90510 0.94865 0.86047 0.92733 0.88716 0.94064 0.90227 0.89140 0.91825 0.90733 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.01 8.21 71.98 0.59 -3.42 16 2 C -0.12 -3.74 3.37 -9.98 -0.03 -3.77 16 3 H 0.10 2.85 7.17 -2.39 -0.02 2.84 16 4 C 0.05 1.43 7.21 72.56 0.52 1.95 16 5 O -0.39 -13.44 11.66 -148.98 -1.74 -15.18 16 6 C 0.04 1.52 6.92 72.21 0.50 2.02 16 7 C 0.05 2.02 1.13 -10.23 -0.01 2.01 16 8 C -0.13 -4.45 6.30 31.39 0.20 -4.25 16 9 C -0.14 -5.60 6.57 31.99 0.21 -5.39 16 10 C 0.20 10.25 3.17 30.55 0.10 10.34 16 11 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 12 C -0.55 -31.04 8.83 25.60 0.23 -30.82 16 13 H 0.07 3.55 7.78 -2.91 -0.02 3.52 16 14 C 0.03 1.43 5.42 84.66 0.46 1.89 16 15 N -0.90 -54.28 12.94 21.45 0.28 -54.00 16 16 Si 0.96 43.92 29.54 68.60 2.03 45.94 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 18 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 O -0.36 -18.10 8.45 -148.98 -1.26 -19.36 16 21 H 0.04 1.65 7.90 -2.39 -0.02 1.63 16 22 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.03 1.31 7.90 -2.39 -0.02 1.29 16 24 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 25 H 0.05 1.64 7.83 -2.39 -0.02 1.62 16 26 H 0.09 3.41 7.41 -2.38 -0.02 3.39 16 27 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 28 H 0.08 2.48 7.31 -2.39 -0.02 2.46 16 29 H 0.09 2.63 7.17 -2.39 -0.02 2.61 16 30 H 0.06 2.56 8.04 -2.39 -0.02 2.54 16 31 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -64.64 258.53 3.15 -61.48 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 1.09 Total: 10.55 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: 2.76 Total: -29.44 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.28 Total: -54.00 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -3.00 Total: -34.54 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -64.64 3.15 -61.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699508972.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.253 kcal (2) G-P(sol) polarization free energy of solvation -64.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds