Wall clock time and date at job start Mon Mar 30 2020 02:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47094 * 2 1 4 4 H 1.08997 * 109.47486 * 305.93887 * 3 2 1 5 5 C 1.50698 * 109.47270 * 185.93422 * 3 2 1 6 6 H 1.08003 * 119.99969 * 237.62662 * 5 3 2 7 7 C 1.37871 * 120.00220 * 57.62842 * 5 3 2 8 8 N 1.31518 * 119.99780 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00324 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47208 * 59.99752 * 9 7 5 11 11 H 1.48501 * 109.47375 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47075 * 299.99926 * 9 7 5 13 13 C 1.53001 * 109.47047 * 65.93430 * 3 2 1 14 14 C 1.50701 * 115.56100 * 75.62084 * 13 3 2 15 15 O 1.20829 * 120.00135 * 207.34230 * 14 13 3 16 16 O 1.34233 * 119.99926 * 27.34896 * 14 13 3 17 17 C 1.53004 * 117.50007 * 221.31295 * 13 3 2 18 18 C 1.53003 * 60.00006 * 107.48886 * 17 13 3 19 19 H 1.08993 * 117.49731 * 252.50695 * 18 17 13 20 20 C 1.52996 * 117.49790 * 107.51252 * 18 17 13 21 21 H 1.09003 * 109.47038 * 172.26108 * 1 2 3 22 22 H 1.08998 * 109.46864 * 292.25533 * 1 2 3 23 23 H 1.08993 * 109.46959 * 52.25972 * 1 2 3 24 24 H 1.09000 * 109.47405 * 240.00392 * 2 1 3 25 25 H 1.08999 * 109.47224 * 120.00118 * 2 1 3 26 26 H 0.96998 * 120.00127 * 180.02562 * 8 7 5 27 27 H 0.96699 * 116.99739 * 185.02207 * 16 14 13 28 28 H 1.08989 * 117.49822 * 359.97438 * 17 13 3 29 29 H 1.08999 * 117.51413 * 214.97124 * 17 13 3 30 30 H 1.09004 * 109.47677 * 111.25156 * 20 18 17 31 31 H 1.09002 * 109.47315 * 231.25545 * 20 18 17 32 32 H 1.09003 * 109.47466 * 351.25198 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5925 1.9861 -0.8320 5 6 3.5398 1.4451 -0.1469 6 1 4.1551 1.9193 0.6035 7 6 4.1266 0.8421 -1.2391 8 7 3.3774 0.2642 -2.1526 9 14 5.9857 0.8447 -1.4209 10 1 6.5977 0.1535 -0.2577 11 1 6.3619 0.1367 -2.6709 12 1 6.4755 2.2454 -1.4782 13 6 1.6554 2.1194 1.3171 14 6 2.4763 1.7214 2.5167 15 8 1.9955 1.7787 3.6237 16 8 3.7416 1.3035 2.3553 17 6 1.1575 3.5646 1.2497 18 6 0.1748 2.4299 1.5459 19 1 -0.5253 2.1520 0.7580 20 6 -0.3595 2.3130 2.9747 21 1 -0.3633 -1.0183 -0.1384 22 1 -0.3633 0.3892 0.9511 23 1 -0.3633 0.6290 -0.8126 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.7902 -0.1603 -2.9209 27 1 4.2038 0.9883 3.1440 28 1 1.1044 4.0332 0.2672 29 1 1.4235 4.2277 2.0729 30 1 -1.4203 2.5633 2.9878 31 1 -0.2227 1.2921 3.3314 32 1 0.1839 3.0002 3.6233 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703308939.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:37 Heat of formation + Delta-G solvation = -71.837075 kcal Electronic energy + Delta-G solvation = -15131.612808 eV Core-core repulsion = 12672.058947 eV Total energy + Delta-G solvation = -2459.553861 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.03331 -37.23647 -35.40981 -33.56427 -31.27982 -28.96928 -26.74112 -24.17728 -22.90871 -21.07976 -19.89132 -19.00413 -17.17824 -16.36173 -15.04174 -14.69285 -14.49384 -14.00678 -13.38267 -12.94045 -12.59719 -12.51488 -12.03845 -11.93953 -11.39802 -11.10014 -10.84917 -10.74432 -10.71413 -10.63726 -10.28736 -10.12451 -9.68146 -9.27471 -9.16478 -8.85995 -8.56984 -8.24001 -5.91689 -3.94926 2.88773 3.36243 3.40805 3.43932 3.88978 4.40641 4.52450 5.24048 5.35802 5.51083 5.67748 5.83360 6.05880 6.22779 6.27706 6.29567 6.31212 6.40180 6.50124 6.56281 6.73284 6.89759 7.01150 7.17989 7.29702 7.42455 7.78890 7.96360 8.19547 8.48533 8.79897 9.11855 9.67688 11.13047 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.034580 B = 0.012495 C = 0.010615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.520993 B = 2240.446726 C = 2637.143449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C 0.086 3.914 4 H 0.036 0.964 5 C -0.495 4.495 6 H 0.080 0.920 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.279 1.279 13 C -0.108 4.108 14 C 0.525 3.475 15 O -0.547 6.547 16 O -0.466 6.466 17 C -0.152 4.152 18 C -0.135 4.135 19 H 0.117 0.883 20 C -0.109 4.109 21 H 0.030 0.970 22 H 0.047 0.953 23 H 0.043 0.957 24 H 0.102 0.898 25 H 0.027 0.973 26 H 0.258 0.742 27 H 0.376 0.624 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.707 2.500 5.560 7.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C 0.068 3.932 4 H 0.054 0.946 5 C -0.533 4.533 6 H 0.097 0.903 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.205 1.205 13 C -0.109 4.109 14 C 0.371 3.629 15 O -0.439 6.439 16 O -0.274 6.274 17 C -0.189 4.189 18 C -0.153 4.153 19 H 0.135 0.865 20 C -0.166 4.166 21 H 0.049 0.951 22 H 0.066 0.934 23 H 0.062 0.938 24 H 0.120 0.880 25 H 0.045 0.955 26 H 0.068 0.932 27 H 0.232 0.768 28 H 0.121 0.879 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.001 2.573 5.315 7.133 hybrid contribution 1.392 -0.334 0.333 1.470 sum -2.609 2.239 5.649 6.613 Atomic orbital electron populations 1.22128 0.99634 0.99353 1.00223 1.21623 0.91452 0.99962 1.02605 1.18386 0.96519 0.91606 0.86726 0.94595 1.21447 0.90826 1.34895 1.06087 0.90265 1.24932 0.97761 0.95615 0.95956 1.69840 1.34602 1.37748 1.11474 0.86648 0.86188 0.77970 0.77031 1.20404 1.21706 1.20521 1.21596 0.93350 0.99863 0.96077 1.22485 0.80119 0.71581 0.88748 1.90600 1.72168 1.53229 1.27922 1.85326 1.26293 1.74877 1.40863 1.23150 1.02759 0.90022 1.02955 1.22676 0.91439 1.01981 0.99200 0.86524 1.21360 0.98692 1.02641 0.93917 0.95059 0.93432 0.93759 0.87951 0.95464 0.93156 0.76816 0.87864 0.89425 0.93746 0.92217 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 8.47 37.16 0.31 -2.74 16 2 C -0.12 -2.77 5.20 -26.73 -0.14 -2.91 16 3 C 0.09 2.04 1.83 -91.77 -0.17 1.87 16 4 H 0.04 0.92 7.98 -51.93 -0.41 0.50 16 5 C -0.49 -12.94 7.25 -34.44 -0.25 -13.19 16 6 H 0.08 2.07 5.38 -52.48 -0.28 1.78 16 7 C 0.06 1.53 5.29 -17.82 -0.09 1.44 16 8 N -0.90 -24.93 11.11 55.43 0.62 -24.32 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.10 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 C -0.11 -2.21 1.63 -155.66 -0.25 -2.47 16 14 C 0.52 10.89 7.57 36.01 0.27 11.16 16 15 O -0.55 -11.42 13.94 -18.75 -0.26 -11.68 16 16 O -0.47 -9.30 9.60 -39.26 -0.38 -9.68 16 17 C -0.15 -2.69 9.53 -26.73 -0.25 -2.95 16 18 C -0.13 -2.37 4.08 -90.62 -0.37 -2.74 16 19 H 0.12 1.97 6.09 -51.93 -0.32 1.65 16 20 C -0.11 -1.78 8.43 37.16 0.31 -1.47 16 21 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.86 5.37 -51.93 -0.28 0.59 16 23 H 0.04 0.84 7.97 -51.93 -0.41 0.43 16 24 H 0.10 2.69 5.73 -51.93 -0.30 2.39 16 25 H 0.03 0.64 7.93 -51.93 -0.41 0.23 16 26 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.38 5.52 9.10 45.56 0.41 5.94 16 28 H 0.10 1.75 8.12 -51.94 -0.42 1.33 16 29 H 0.09 1.46 8.05 -51.93 -0.42 1.04 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 1.05 7.47 -51.93 -0.39 0.66 16 32 H 0.06 1.06 6.84 -51.93 -0.36 0.70 16 LS Contribution 255.39 15.07 3.85 3.85 Total: -1.00 -28.93 255.39 -5.39 -34.32 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -3.56 Total: 5.38 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -0.63 Total: -13.98 kcal Atomic # 7 Polarization: -24.93 SS G_CDS: 0.62 Total: -24.32 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.64 Total: -21.36 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.93 -5.39 -34.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703308939.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.519 kcal (2) G-P(sol) polarization free energy of solvation -28.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds